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Items: 19

1.

Peptidome profiling dataset of ovarian cancer and non-cancer proximal fluids: Ascites and blood sera.

Shender V, Arapidi G, Butenko I, Anikanov N, Ivanova O, Govorun V.

Data Brief. 2018 Dec 19;22:557-562. doi: 10.1016/j.dib.2018.12.056. eCollection 2019 Feb.

2.

Expression and Intracellular Localization of Paraoxonase 2 in Different Types of Malignancies.

Shakhparonov MI, Antipova NV, Shender VO, Shnaider PV, Arapidi GP, Pestov NB, Pavlyukov MS.

Acta Naturae. 2018 Jul-Sep;10(3):92-99.

3.

LogLoss-BERAF: An ensemble-based machine learning model for constructing highly accurate diagnostic sets of methylation sites accounting for heterogeneity in prostate cancer.

Babalyan K, Sultanov R, Generozov E, Sharova E, Kostryukova E, Larin A, Kanygina A, Govorun V, Arapidi G.

PLoS One. 2018 Nov 2;13(11):e0204371. doi: 10.1371/journal.pone.0204371. eCollection 2018.

4.

Proteogenomic analysis of Mycobacterium tuberculosis Beijing B0/W148 cluster strains.

Bespyatykh J, Smolyakov A, Guliaev A, Shitikov E, Arapidi G, Butenko I, Dogonadze M, Manicheva O, Ilina E, Zgoda V, Govorun V.

J Proteomics. 2019 Feb 10;192:18-26. doi: 10.1016/j.jprot.2018.07.002. Epub 2018 Jul 24.

PMID:
30009986
5.

Therapy-induced stress response is associated with downregulation of pre-mRNA splicing in cancer cells.

Anufrieva KS, Shender VО, Arapidi GP, Pavlyukov MS, Shakhparonov MI, Shnaider PV, Butenko IO, Lagarkova MA, Govorun VM.

Genome Med. 2018 Jun 27;10(1):49. doi: 10.1186/s13073-018-0557-y.

6.

Apoptotic Cell-Derived Extracellular Vesicles Promote Malignancy of Glioblastoma Via Intercellular Transfer of Splicing Factors.

Pavlyukov MS, Yu H, Bastola S, Minata M, Shender VO, Lee Y, Zhang S, Wang J, Komarova S, Wang J, Yamaguchi S, Alsheikh HA, Shi J, Chen D, Mohyeldin A, Kim SH, Shin YJ, Anufrieva K, Evtushenko EG, Antipova NV, Arapidi GP, Govorun V, Pestov NB, Shakhparonov MI, Lee LJ, Nam DH, Nakano I.

Cancer Cell. 2018 Jul 9;34(1):119-135.e10. doi: 10.1016/j.ccell.2018.05.012. Epub 2018 Jun 21.

PMID:
29937354
7.

Peptidomics dataset: Blood plasma and serum samples of healthy donors fractionated on a set of chromatography sorbents.

Arapidi G, Osetrova M, Ivanova O, Butenko I, Saveleva T, Pavlovich P, Anikanov N, Ivanov V, Govorun V.

Data Brief. 2018 Apr 10;18:1204-1211. doi: 10.1016/j.dib.2018.04.018. eCollection 2018 Jun.

8.

Methylation profile of induced pluripotent stem cells generated by integration and integration-free approaches.

Sultanov R, Lebedeva O, Arapidi G, Lagarkova M, Kiselev S.

Data Brief. 2018 Jan 31;17:662-666. doi: 10.1016/j.dib.2018.01.061. eCollection 2018 Apr.

9.

Exposure to the Epstein-Barr Viral Antigen Latent Membrane Protein 1 Induces Myelin-Reactive Antibodies In Vivo.

Lomakin Y, Arapidi GP, Chernov A, Ziganshin R, Tcyganov E, Lyadova I, Butenko IO, Osetrova M, Ponomarenko N, Telegin G, Govorun VM, Gabibov A, Belogurov A Jr.

Front Immunol. 2017 Jul 6;8:777. doi: 10.3389/fimmu.2017.00777. eCollection 2017.

10.

Alternative splicing shapes transcriptome but not proteome diversity in Physcomitrella patens.

Fesenko I, Khazigaleeva R, Kirov I, Kniazev A, Glushenko O, Babalyan K, Arapidi G, Shashkova T, Butenko I, Zgoda V, Anufrieva K, Seredina A, Filippova A, Govorun V.

Sci Rep. 2017 Jun 2;7(1):2698. doi: 10.1038/s41598-017-02970-z.

11.

Comprehensive analysis of draft genomes of two closely related pseudomonas syringae phylogroup 2b strains infecting mono- and dicotyledon host plants.

Sultanov RI, Arapidi GP, Vinogradova SV, Govorun VM, Luster DG, Ignatov AN.

BMC Genomics. 2016 Dec 28;17(Suppl 14):1010. doi: 10.1186/s12864-016-3358-y.

12.

The Physcomitrella patens Chloroplast Proteome Changes in Response to Protoplastation.

Fesenko I, Seredina A, Arapidi G, Ptushenko V, Urban A, Butenko I, Kovalchuk S, Babalyan K, Knyazev A, Khazigaleeva R, Pushkova E, Anikanov N, Ivanov V, Govorun VM.

Front Plant Sci. 2016 Nov 4;7:1661. eCollection 2016.

13.

The Pathogenesis of the Demyelinating Form of Guillain-Barre Syndrome (GBS): Proteo-peptidomic and Immunological Profiling of Physiological Fluids.

Ziganshin RH, Ivanova OM, Lomakin YA, Belogurov AA Jr, Kovalchuk SI, Azarkin IV, Arapidi GP, Anikanov NA, Shender VO, Piradov MA, Suponeva NA, Vorobyeva AA, Gabibov AG, Ivanov VT, Govorun VM.

Mol Cell Proteomics. 2016 Jul;15(7):2366-78. doi: 10.1074/mcp.M115.056036. Epub 2016 May 3.

14.

Quantitative proteomic analysis of Vietnamese krait venoms: Neurotoxins are the major components in Bungarus multicinctus and phospholipases A2 in Bungarus fasciatus.

Ziganshin RH, Kovalchuk SI, Arapidi GP, Starkov VG, Hoang AN, Thi Nguyen TT, Nguyen KC, Shoibonov BB, Tsetlin VI, Utkin YN.

Toxicon. 2015 Dec 1;107(Pt B):197-209. doi: 10.1016/j.toxicon.2015.08.026. Epub 2015 Sep 2.

PMID:
26341420
15.

Specific pools of endogenous peptides are present in gametophore, protonema, and protoplast cells of the moss Physcomitrella patens.

Fesenko IA, Arapidi GP, Skripnikov AY, Alexeev DG, Kostryukova ES, Manolov AI, Altukhov IA, Khazigaleeva RA, Seredina AV, Kovalchuk SI, Ziganshin RH, Zgoda VG, Novikova SE, Semashko TA, Slizhikova DK, Ptushenko VV, Gorbachev AY, Govorun VM, Ivanov VT.

BMC Plant Biol. 2015 Mar 15;15:87. doi: 10.1186/s12870-015-0468-7.

16.

Proteome-metabolome profiling of ovarian cancer ascites reveals novel components involved in intercellular communication.

Shender VO, Pavlyukov MS, Ziganshin RH, Arapidi GP, Kovalchuk SI, Anikanov NA, Altukhov IA, Alexeev DG, Butenko IO, Shavarda AL, Khomyakova EB, Evtushenko E, Ashrafyan LA, Antonova IB, Kuznetcov IN, Gorbachev AY, Shakhparonov MI, Govorun VM.

Mol Cell Proteomics. 2014 Dec;13(12):3558-71. doi: 10.1074/mcp.M114.041194. Epub 2014 Sep 30.

17.

[Proteomic technologies for identification of serum potential biomarkers of autoimmune demyelinating polyneuropathies].

Ziganshin RKh, Arapidi GP, Azarkin IV, Balmasova IP, Timchenko OL, Fed'kina IuA, Morozova EA, Piradov MA, Suponeva NA, Iushchuk ND, Govorun VM.

Bioorg Khim. 2011 Jan-Feb;37(1):36-44. Russian.

PMID:
21460879
18.

New method for peptide desorption from abundant blood proteins for plasma/serum peptidome analyses by mass spectrometry.

Ziganshin R, Arapidi G, Azarkin I, Zaryadieva E, Alexeev D, Govorun V, Ivanov V.

J Proteomics. 2011 May 1;74(5):595-606. doi: 10.1016/j.jprot.2011.01.014. Epub 2011 Feb 2.

PMID:
21295167
19.

[Serum proteome profiling for ovarion cancer diagnosis using ClinProt magnetic bead technique and MALDI-TOF-mass-spectrometry].

Ziganshin RKh, Alekseev DG, Arapidi GP, Ivanov VT, Moshkovskiĭ SA, Govorun VM.

Biomed Khim. 2008 Jul-Aug;54(4):408-19. Russian.

PMID:
18988457

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