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Items: 44

1.

Effect of heritable symbionts on maternally-derived embryo transcripts.

Mateos M, Silva NO, Ramirez P, Higareda-Alvear VM, Aramayo R, Erickson JW.

Sci Rep. 2019 Jun 20;9(1):8847. doi: 10.1038/s41598-019-45371-0.

2.

A structural and dynamic model for the assembly of Replication Protein A on single-stranded DNA.

Yates LA, Aramayo RJ, Pokhrel N, Caldwell CC, Kaplan JA, Perera RL, Spies M, Antony E, Zhang X.

Nat Commun. 2018 Dec 21;9(1):5447. doi: 10.1038/s41467-018-07883-7.

3.

Structure and regulation of the human INO80-nucleosome complex.

Ayala R, Willhoft O, Aramayo RJ, Wilkinson M, McCormack EA, Ocloo L, Wigley DB, Zhang X.

Nature. 2018 Apr;556(7701):391-395. doi: 10.1038/s41586-018-0021-6. Epub 2018 Apr 11.

4.

Cryo-EM structures of the human INO80 chromatin-remodeling complex.

Aramayo RJ, Willhoft O, Ayala R, Bythell-Douglas R, Wigley DB, Zhang X.

Nat Struct Mol Biol. 2018 Jan;25(1):37-44. doi: 10.1038/s41594-017-0003-7. Epub 2017 Dec 4.

5.
6.

Single-Particle Electron Microscopy Analysis of DNA Repair Complexes.

Sawicka M, Aramayo R, Ayala R, Glyde R, Zhang X.

Methods Enzymol. 2017;592:159-186. doi: 10.1016/bs.mie.2017.03.010. Epub 2017 May 8. Review.

PMID:
28668120
7.

Crosstalk within a functional INO80 complex dimer regulates nucleosome sliding.

Willhoft O, McCormack EA, Aramayo RJ, Bythell-Douglas R, Ocloo L, Zhang X, Wigley DB.

Elife. 2017 Jun 6;6. pii: e25782. doi: 10.7554/eLife.25782.

8.

Ribosome profiling the cell cycle: lessons and challenges.

Aramayo R, Polymenis M.

Curr Genet. 2017 Dec;63(6):959-964. doi: 10.1007/s00294-017-0698-3. Epub 2017 Apr 27. Review.

9.

Synaptic vesicles isolated from the electric organ of Torpedo californica and from the central nervous system of Mus musculus contain small ribonucleic acids (sRNAs).

Li H, Wu C, Aramayo R, Sachs MS, Harlow ML.

Genom Data. 2017 Mar 8;12:52-53. doi: 10.1016/j.gdata.2017.02.015. eCollection 2017 Jun.

10.

Translational control of lipogenic enzymes in the cell cycle of synchronous, growing yeast cells.

Blank HM, Perez R, He C, Maitra N, Metz R, Hill J, Lin Y, Johnson CD, Bankaitis VA, Kennedy BK, Aramayo R, Polymenis M.

EMBO J. 2017 Feb 15;36(4):487-502. doi: 10.15252/embj.201695050. Epub 2017 Jan 5.

11.

Control of seizures by ketogenic diet-induced modulation of metabolic pathways.

Clanton RM, Wu G, Akabani G, Aramayo R.

Amino Acids. 2017 Jan;49(1):1-20. doi: 10.1007/s00726-016-2336-7. Epub 2016 Sep 28. Review.

PMID:
27683025
12.

Synaptic vesicles contain small ribonucleic acids (sRNAs) including transfer RNA fragments (trfRNA) and microRNAs (miRNA).

Li H, Wu C, Aramayo R, Sachs MS, Harlow ML.

Sci Rep. 2015 Oct 8;5:14918. doi: 10.1038/srep14918.

13.

Translate to divide: сontrol of the cell cycle by protein synthesis.

Polymenis M, Aramayo R.

Microb Cell. 2015 Mar 20;2(4):94-104. doi: 10.15698/mic2015.04.198. Review.

14.

Neurospora crassa, a model system for epigenetics research.

Aramayo R, Selker EU.

Cold Spring Harb Perspect Biol. 2013 Oct 1;5(10):a017921. doi: 10.1101/cshperspect.a017921. Review.

15.

Catabolic plasmid specifying polychlorinated biphenyl degradation in Cupriavidus sp. strain SK-4: mobilization and expression in a pseudomonad.

Ilori MO, Picardal FW, Aramayo R, Adebusoye SA, Obayori OS, Benedik MJ.

J Basic Microbiol. 2015 Mar;55(3):338-45. doi: 10.1002/jobm.201200807. Epub 2013 Jun 21.

PMID:
23787897
16.

Quaternary structure of the specific p53-DNA complex reveals the mechanism of p53 mutant dominance.

Aramayo R, Sherman MB, Brownless K, Lurz R, Okorokov AL, Orlova EV.

Nucleic Acids Res. 2011 Nov 1;39(20):8960-71. doi: 10.1093/nar/gkr386. Epub 2011 Jul 14.

17.

QIP, a component of the vegetative RNA silencing pathway, is essential for meiosis and suppresses meiotic silencing in Neurospora crassa.

Lee DW, Millimaki R, Aramayo R.

Genetics. 2010 Sep;186(1):127-33. doi: 10.1534/genetics.110.118422. Epub 2010 Jun 30.

18.

A cytosine methyltransferase homologue is essential for sexual development in Aspergillus nidulans.

Lee DW, Freitag M, Selker EU, Aramayo R.

PLoS One. 2008 Jun 25;3(6):e2531. doi: 10.1371/journal.pone.0002531.

19.

The emerging world of wikis.

Hu JC, Aramayo R, Bolser D, Conway T, Elsik CG, Gribskov M, Kelder T, Kihara D, Knight TF Jr, Pico AR, Siegele DA, Wanner BL, Welch RD.

Science. 2008 Jun 6;320(5881):1289-90. doi: 10.1126/science.320.5881.1289b. No abstract available.

PMID:
18535227
20.

Structure of the acidianus filamentous virus 3 and comparative genomics of related archaeal lipothrixviruses.

Vestergaard G, Aramayo R, Basta T, Häring M, Peng X, Brügger K, Chen L, Rachel R, Boisset N, Garrett RA, Prangishvili D.

J Virol. 2008 Jan;82(1):371-81. Epub 2007 Oct 17.

21.

Meiotic silencing and the epigenetics of sex.

Kelly WG, Aramayo R.

Chromosome Res. 2007;15(5):633-51. Review.

22.

Plant SET domain-containing proteins: structure, function and regulation.

Ng DW, Wang T, Chandrasekharan MB, Aramayo R, Kertbundit S, Hall TC.

Biochim Biophys Acta. 2007 May-Jun;1769(5-6):316-29. Epub 2007 Apr 12. Review.

23.

Structural and genomic properties of the hyperthermophilic archaeal virus ATV with an extracellular stage of the reproductive cycle.

Prangishvili D, Vestergaard G, Häring M, Aramayo R, Basta T, Rachel R, Garrett RA.

J Mol Biol. 2006 Jun 23;359(5):1203-16. Epub 2006 Apr 27.

PMID:
16677670
24.

Divalent ion-dependent swelling of tomato bushy stunt virus: a multi-approach study.

Aramayo R, Mérigoux C, Larquet E, Bron P, Pérez J, Dumas C, Vachette P, Boisset N.

Biochim Biophys Acta. 2005 Aug 5;1724(3):345-54.

PMID:
16023788
25.

DNA methylation affects meiotic trans-sensing, not meiotic silencing, in Neurospora.

Pratt RJ, Lee DW, Aramayo R.

Genetics. 2004 Dec;168(4):1925-35.

26.

Hym1p affects cell cycle progression in Saccharomyces cerevisiae.

Bogomolnaya LM, Pathak R, Guo J, Cham R, Aramayo R, Polymenis M.

Curr Genet. 2004 Oct;46(4):183-92. Epub 2004 Sep 10.

PMID:
15365764
27.

DNA methylation is independent of RNA interference in Neurospora.

Freitag M, Lee DW, Kothe GO, Pratt RJ, Aramayo R, Selker EU.

Science. 2004 Jun 25;304(5679):1939. No abstract available.

28.

Properties of unpaired DNA required for efficient silencing in Neurospora crassa.

Lee DW, Seong KY, Pratt RJ, Baker K, Aramayo R.

Genetics. 2004 May;167(1):131-50.

29.

Lessons from the genome sequence of Neurospora crassa: tracing the path from genomic blueprint to multicellular organism.

Borkovich KA, Alex LA, Yarden O, Freitag M, Turner GE, Read ND, Seiler S, Bell-Pedersen D, Paietta J, Plesofsky N, Plamann M, Goodrich-Tanrikulu M, Schulte U, Mannhaupt G, Nargang FE, Radford A, Selitrennikoff C, Galagan JE, Dunlap JC, Loros JJ, Catcheside D, Inoue H, Aramayo R, Polymenis M, Selker EU, Sachs MS, Marzluf GA, Paulsen I, Davis R, Ebbole DJ, Zelter A, Kalkman ER, O'Rourke R, Bowring F, Yeadon J, Ishii C, Suzuki K, Sakai W, Pratt R.

Microbiol Mol Biol Rev. 2004 Mar;68(1):1-108. Review.

30.

The G1 cyclin Cln3p controls vacuolar biogenesis in Saccharomyces cerevisiae.

Han BK, Aramayo R, Polymenis M.

Genetics. 2003 Oct;165(2):467-76.

31.

An argonaute-like protein is required for meiotic silencing.

Lee DW, Pratt RJ, McLaughlin M, Aramayo R.

Genetics. 2003 Jun;164(2):821-8.

32.

Unpaired genes do not silence their paired neighbors.

Kutil BL, Seong KY, Aramayo R.

Curr Genet. 2003 Sep;43(6):425-32. Epub 2003 Jun 12.

PMID:
12802506
33.

The genome sequence of the filamentous fungus Neurospora crassa.

Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, Jaffe D, FitzHugh W, Ma LJ, Smirnov S, Purcell S, Rehman B, Elkins T, Engels R, Wang S, Nielsen CB, Butler J, Endrizzi M, Qui D, Ianakiev P, Bell-Pedersen D, Nelson MA, Werner-Washburne M, Selitrennikoff CP, Kinsey JA, Braun EL, Zelter A, Schulte U, Kothe GO, Jedd G, Mewes W, Staben C, Marcotte E, Greenberg D, Roy A, Foley K, Naylor J, Stange-Thomann N, Barrett R, Gnerre S, Kamal M, Kamvysselis M, Mauceli E, Bielke C, Rudd S, Frishman D, Krystofova S, Rasmussen C, Metzenberg RL, Perkins DD, Kroken S, Cogoni C, Macino G, Catcheside D, Li W, Pratt RJ, Osmani SA, DeSouza CP, Glass L, Orbach MJ, Berglund JA, Voelker R, Yarden O, Plamann M, Seiler S, Dunlap J, Radford A, Aramayo R, Natvig DO, Alex LA, Mannhaupt G, Ebbole DJ, Freitag M, Paulsen I, Sachs MS, Lander ES, Nusbaum C, Birren B.

Nature. 2003 Apr 24;422(6934):859-68.

PMID:
12712197
34.
35.
36.
37.

Asm-1+, a Neurospora crassa gene related to transcriptional regulators of fungal development.

Aramayo R, Peleg Y, Addison R, Metzenberg R.

Genetics. 1996 Nov;144(3):991-1003.

38.

NUC-2, a component of the phosphate-regulated signal transduction pathway in Neurospora crassa, is an ankyrin repeat protein.

Poleg Y, Aramayo R, Kang S, Hall JG, Metzenberg RL.

Mol Gen Genet. 1996 Oct 28;252(6):709-16.

PMID:
8917314
39.

Translocation of Neurospora crassa transcription factor NUC-1 into the nucleus is induced by phosphorus limitation.

Peleg Y, Addison R, Aramayo R, Metzenberg RL.

Fungal Genet Biol. 1996 Sep;20(3):185-91.

PMID:
8953266
40.

Meiotic transvection in fungi.

Aramayo R, Metzenberg RL.

Cell. 1996 Jul 12;86(1):103-13.

41.

The Aspergillus nidulans yA gene is regulated by abaA.

Aramayo R, Timberlake WE.

EMBO J. 1993 May;12(5):2039-48.

42.

Sequence and molecular structure of the Aspergillus nidulans yA (laccase I) gene.

Aramayo R, Timberlake WE.

Nucleic Acids Res. 1990 Jun 11;18(11):3415. No abstract available.

43.
44.

[Rabies in Bolivia].

Aramayo R.

Bull Off Int Epizoot. 1967 Mar-Apr;67(3):471-3. French. No abstract available.

PMID:
5628834

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