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Differential Expression of IFN-γ, IL-10, TLR1, and TLR2 and Their Potential Effects on Downgrading Leprosy Reaction and Erythema Nodosum Leprosum.

Antunes DE, Goulart IMB, Lima MIS, Alves PT, Tavares PCB, Goulart LR.

J Immunol Res. 2019 Nov 7;2019:3405103. doi: 10.1155/2019/3405103. eCollection 2019.


Applicability of Dmax Method on Heart Rate Variability to Estimate the Lactate Thresholds in Male Runners.

Nascimento EMF, Antunes D, do Nascimento Salvador PC, Borszcz FK, de Lucas RD.

J Sports Med (Hindawi Publ Corp). 2019 Sep 19;2019:2075371. doi: 10.1155/2019/2075371. eCollection 2019.


Hepatitis E Virus (HEV)-Specific T Cell Receptor Cross-Recognition: Implications for Immunotherapy.

Soon CF, Zhang S, Suneetha PV, Antunes DA, Manns MP, Raha S, Schultze-Florey C, Prinz I, Wedemeyer H, Sällberg Chen M, Cornberg M.

Front Immunol. 2019 Sep 4;10:2076. doi: 10.3389/fimmu.2019.02076. eCollection 2019.


BCG vaccine and leprosy household contacts: Protective effect and probability to becoming sick during follow-up.

Gomes RR, Antunes DE, Dos Santos DF, Sabino EFP, Oliveira DB, Goulart IMB.

Vaccine. 2019 Oct 8;37(43):6510-6517. doi: 10.1016/j.vaccine.2019.08.067. Epub 2019 Sep 6.


Using parallelized incremental meta-docking can solve the conformational sampling issue when docking large ligands to proteins.

Devaurs D, Antunes DA, Hall-Swan S, Mitchell N, Moll M, Lizée G, Kavraki LE.

BMC Mol Cell Biol. 2019 Sep 5;20(1):42. doi: 10.1186/s12860-019-0218-z.


Effects of the Q80K Polymorphism on the Physicochemical Properties of Hepatitis C Virus Subtype 1a NS3 Protease.

Peres-da-Silva A, Antunes D, Quintanilha Torres AL, Caffarena ER, Lampe E.

Viruses. 2019 Jul 30;11(8). pii: E691. doi: 10.3390/v11080691.


Propylthiouracil-induced agranulocytosis as a rare complication of antithyroid drugs in a patient with Graves' disease.

Rabelo PN, Rabelo PN, Paula AF, Conceição SAD, Viggiano DPPO, Antunes DE, Jatene EM, Paula SLFM, Dias ML, Reis MAL.

Rev Assoc Med Bras (1992). 2019 Jul 22;65(6):755-760. doi: 10.1590/1806-9282.65.6.755.


Genomic imbalances defining novel intellectual disability associated loci.

Lopes F, Torres F, Soares G, Barbosa M, Silva J, Duque F, Rocha M, Sá J, Oliveira G, Sá MJ, Temudo T, Sousa S, Marques C, Lopes S, Gomes C, Barros G, Jorge A, Rocha F, Martins C, Mesquita S, Loureiro S, Cardoso EM, Cálix MJ, Dias A, Martins C, Mota CR, Antunes D, Dupont J, Figueiredo S, Figueiroa S, Gama-de-Sousa S, Cruz S, Sampaio A, Eijk P, Weiss MM, Ylstra B, Rendeiro P, Tavares P, Reis-Lima M, Pinto-Basto J, Fortuna AM, Maciel P.

Orphanet J Rare Dis. 2019 Jul 5;14(1):164. doi: 10.1186/s13023-019-1135-0.


Studying effects of different protonation states of His11 and His102 in ribose-5-phosphate isomerase of Trypanosoma cruzi: an example of cooperative behavior.

Soares RF, Antunes D, Santos LHS, Rocha GV, Bastos LS, Guimarães ACR, Caffarena ER.

J Biomol Struct Dyn. 2019 Jun 11:1-10. doi: 10.1080/07391102.2019.1626769. [Epub ahead of print]


Early Interaction of Alternaria infectoria Conidia with Macrophages.

Almeida MC, Antunes D, Silva BMA, Rodrigues L, Mota M, Borges O, Fernandes C, Gonçalves T.

Mycopathologia. 2019 Jun;184(3):383-392. doi: 10.1007/s11046-019-00339-6. Epub 2019 Jun 11.


Oral Route Driven Acute Trypanosoma cruzi Infection Unravels an IL-6 Dependent Hemostatic Derangement.

Antunes D, Marins-Dos-Santos A, Ramos MT, Mascarenhas BAS, Moreira CJC, Farias-de-Oliveira DA, Savino W, Monteiro RQ, de Meis J.

Front Immunol. 2019 May 14;10:1073. doi: 10.3389/fimmu.2019.01073. eCollection 2019.


Nonsteroidal Anti-inflammatory Drugs Modulate Gene Expression of Inflammatory Mediators in Oral Squamous Cell Carcinoma.

Antunes DM, Rodrigues MFSD, Guimarães DM, Duarte CME, Miguita L, Corrêa L, DE Oliveira APL, Fernandes KPS, Nunes FD.

Anticancer Res. 2019 May;39(5):2385-2394. doi: 10.21873/anticanres.13356.


In silico analysis of the V66M variant of human BDNF in psychiatric disorders: An approach to precision medicine.

De Oliveira CCS, Pereira GRC, De Alcantara JYS, Antunes D, Caffarena ER, De Mesquita JF.

PLoS One. 2019 Apr 18;14(4):e0215508. doi: 10.1371/journal.pone.0215508. eCollection 2019.


The Endoplasmic Reticulum-Mitochondria Encounter Structure Complex Coordinates Coenzyme Q Biosynthesis.

Eisenberg-Bord M, Tsui HS, Antunes D, Fernández-Del-Río L, Bradley MC, Dunn CD, Nguyen TPT, Rapaport D, Clarke CF, Schuldiner M.

Contact (Thousand Oaks). 2019 Feb 22;2:2515256418825409. doi: 10.1177/2515256418825409.


CAD/CAM system influence marginal fit of different ceramic types?

de Almeida IG, Antunes DB, Braun NX, Restani A, Straioto FG, Galhano GA.

Indian J Dent Res. 2019 Jan-Feb;30(1):127-129. doi: 10.4103/ijdr.IJDR_77_18.


Evaluation of the cutaneous sensation of the face in patients with different clinical forms of leprosy.

Oliveira MF, Antunes DE, Santos DFD, Goulart IMB.

PLoS One. 2019 Mar 14;14(3):e0213842. doi: 10.1371/journal.pone.0213842. eCollection 2019.


Unraveling RNA dynamical behavior of TPP riboswitches: a comparison between Escherichia coli and Arabidopsis thaliana.

Antunes D, Jorge NAN, Garcia de Souza Costa M, Passetti F, Caffarena ER.

Sci Rep. 2019 Mar 12;9(1):4197. doi: 10.1038/s41598-019-40875-1.


The Role of AKT3 Copy Number Changes in Brain Abnormalities and Neurodevelopmental Disorders: Four New Cases and Literature Review.

Lopes F, Torres F, Soares G, van Karnebeek CD, Martins C, Antunes D, Silva J, Muttucomaroe L, Botelho LF, Sousa S, Rendeiro P, Tavares P, Van Esch H, Rajcan-Separovic E, Maciel P.

Front Genet. 2019 Feb 22;10:58. doi: 10.3389/fgene.2019.00058. eCollection 2019.


APE-Gen: A Fast Method for Generating Ensembles of Bound Peptide-MHC Conformations.

Abella JR, Antunes DA, Clementi C, Kavraki LE.

Molecules. 2019 Mar 2;24(5). pii: E881. doi: 10.3390/molecules24050881.


Native State of Complement Protein C3d Analysed via Hydrogen Exchange and Conformational Sampling.

Devaurs D, Papanastasiou M, Antunes DA, Abella JR, Moll M, Ricklin D, Lambris JD, Kavraki LE.

Int J Comput Biol Drug Des. 2018;11(1-2):90-113. doi: 10.1504/IJCBDD.2018.090834. Epub 2018 Mar 24.


Evaluation of the hypothalamic-pituitary-adrenal axis in a case series of familial partial lipodystrophy.

Elias CP, Antunes DE, Coelho MS, de Lima CL, Rassi N, de Melo APM, Amato AA.

Diabetol Metab Syndr. 2019 Jan 3;11:1. doi: 10.1186/s13098-018-0396-4. eCollection 2019.


Overexpression of branched-chain amino acid aminotransferases rescues the growth defects of cells lacking the Barth syndrome-related gene TAZ1.

Antunes D, Chowdhury A, Aich A, Saladi S, Harpaz N, Stahl M, Schuldiner M, Herrmann JM, Rehling P, Rapaport D.

J Mol Med (Berl). 2019 Feb;97(2):269-279. doi: 10.1007/s00109-018-1728-4. Epub 2019 Jan 3.


Structure-based Methods for Binding Mode and Binding Affinity Prediction for Peptide-MHC Complexes.

Antunes DA, Abella JR, Devaurs D, Rigo MM, Kavraki LE.

Curr Top Med Chem. 2018;18(26):2239-2255. doi: 10.2174/1568026619666181224101744. Review.


Thiophenacetamide as a potential modulator to NF-κB: structure and dynamics study using in silico and molecular biology assays.

Silva VS, Vergara FM, Seito LN, Antunes D, Santos LHS, Henriques MG, Caffarena ER.

J Biomol Struct Dyn. 2019 Oct;37(16):4395-4406. doi: 10.1080/07391102.2018.1552623. Epub 2019 Jan 11.


Revealing Unknown Protein Structures Using Computational Conformational Sampling Guided by Experimental Hydrogen-Exchange Data.

Devaurs D, Antunes DA, Kavraki LE.

Int J Mol Sci. 2018 Oct 31;19(11). pii: E3406. doi: 10.3390/ijms19113406.


[Gestational Diabetes Mellitus: Is There an Advantage in Using the Current Diagnostic Criteria?]

Ferreira AF, Silva CM, Antunes D, Sousa F, Lobo AC, Moura P.

Acta Med Port. 2018 Aug 31;31(7-8):416-424. doi: 10.20344/amp.10135. Epub 2018 Aug 31. Portuguese.


Measles outbreak in a tertiary level hospital, Porto, Portugal, 2018: challenges in the post-elimination era.

Sá Machado R, Perez Duque M, Almeida S, Cruz I, Sottomayor A, Almeida I, R Oliveira J, Antunes D.

Euro Surveill. 2018 May;23(20). doi: 10.2807/1560-7917.ES.2018.23.20.18-00224.


Molecular, immunological and neurophysiological evaluations for early diagnosis of neural impairment in seropositive leprosy household contacts.

Santos DFD, Mendonça MR, Antunes DE, Sabino EFP, Pereira RC, Goulart LR, Goulart IMB.

PLoS Negl Trop Dis. 2018 May 21;12(5):e0006494. doi: 10.1371/journal.pntd.0006494. eCollection 2018 May.


Perioperative Family Centered Care: Nursing Interventions that Support Child and Family's Emotional Management.

Antunes D, Diogo P.

Rev Port Cir Cardiotorac Vasc. 2017 Jul-Dec;24(3-4):196.


A known pathogenic variant in the essential mitochondrial translation gene RMND1 causes a Perrault-like syndrome with renal defects.

Demain LAM, Antunes D, O'Sullivan J, Bhaskhar SS, O'Keefe RT, Newman WG.

Clin Genet. 2018 Aug;94(2):276-277. doi: 10.1111/cge.13255. Epub 2018 Apr 19. No abstract available.


General Prediction of Peptide-MHC Binding Modes Using Incremental Docking: A Proof of Concept.

Antunes DA, Devaurs D, Moll M, Lizée G, Kavraki LE.

Sci Rep. 2018 Mar 12;8(1):4327. doi: 10.1038/s41598-018-22173-4.


Genomic and structural features of the yellow fever virus from the 2016-2017 Brazilian outbreak.

Gómez MM, Abreu FVS, Santos AACD, Mello IS, Santos MP, Ribeiro IP, Ferreira-de-Brito A, Miranda RM, Castro MG, Ribeiro MS, Laterrière Junior RDC, Aguiar SF, Meira GLS, Antunes D, Torres PHM, Mir D, Vicente ACP, Guimarães ACR, Caffarena ER, Bello G, Lourenço-de-Oliveira R, Bonaldo MC.

J Gen Virol. 2018 Apr;99(4):536-548. doi: 10.1099/jgv.0.001033. Epub 2018 Feb 22.


Using RNA Sequence and Structure for the Prediction of Riboswitch Aptamer: A Comprehensive Review of Available Software and Tools.

Antunes D, Jorge NAN, Caffarena ER, Passetti F.

Front Genet. 2018 Jan 19;8:231. doi: 10.3389/fgene.2017.00231. eCollection 2017. Review.


Neuromuscular features in sprinters with cerebral palsy: case studies based on paralympic classification.

Antunes D, Rossato M, Kons RL, Sakugawa RL, Fischer G.

J Exerc Rehabil. 2017 Dec 27;13(6):716-721. doi: 10.12965/jer.1735112.556. eCollection 2017 Dec.


Revisiting primary neural leprosy: Clinical, serological, molecular, and neurophysiological aspects.

Santos DFD, Mendonça MR, Antunes DE, Sabino EFP, Pereira RC, Goulart LR, Goulart IMB.

PLoS Negl Trop Dis. 2017 Nov 27;11(11):e0006086. doi: 10.1371/journal.pntd.0006086. eCollection 2017 Nov.


DINC 2.0: A New Protein-Peptide Docking Webserver Using an Incremental Approach.

Antunes DA, Moll M, Devaurs D, Jackson KR, Lizée G, Kavraki LE.

Cancer Res. 2017 Nov 1;77(21):e55-e57. doi: 10.1158/0008-5472.CAN-17-0511.


Interpreting T-Cell Cross-reactivity through Structure: Implications for TCR-Based Cancer Immunotherapy.

Antunes DA, Rigo MM, Freitas MV, Mendes MFA, Sinigaglia M, Lizée G, Kavraki LE, Selin LK, Cornberg M, Vieira GF.

Front Immunol. 2017 Oct 4;8:1210. doi: 10.3389/fimmu.2017.01210. eCollection 2017.


Structural insights into leishmanolysins encoded on chromosome 10 of Leishmania (Viannia) braziliensis.

Sutter A, Antunes D, Silva-Almeida M, Costa MGS, Caffarena ER.

Mem Inst Oswaldo Cruz. 2017 Sep;112(9):617-625. doi: 10.1590/0074-02760160522.


Vps13-Mcp1 interact at vacuole-mitochondria interfaces and bypass ER-mitochondria contact sites.

John Peter AT, Herrmann B, Antunes D, Rapaport D, Dimmer KS, Kornmann B.

J Cell Biol. 2017 Oct 2;216(10):3219-3229. doi: 10.1083/jcb.201610055. Epub 2017 Sep 1.


Targeted gene disruption coupled with metabolic screen approach to uncover the LEAFY COTYLEDON1-LIKE4 (L1L4) function in tomato fruit metabolism.

Gago C, Drosou V, Paschalidis K, Guerreiro A, Miguel G, Antunes D, Hilioti Z.

Plant Cell Rep. 2017 Jul;36(7):1065-1082. doi: 10.1007/s00299-017-2137-9. Epub 2017 Apr 8.


Coarse-Grained Conformational Sampling of Protein Structure Improves the Fit to Experimental Hydrogen-Exchange Data.

Devaurs D, Antunes DA, Papanastasiou M, Moll M, Ricklin D, Lambris JD, Kavraki LE.

Front Mol Biosci. 2017 Mar 10;4:13. doi: 10.3389/fmolb.2017.00013. eCollection 2017.


Hyperprolinemia as a clue in the diagnosis of a patient with psychiatric manifestations.

Duarte M, Afonso J, Moreira A, Antunes D, Ferreira C, Correia H, Marques M, Sequeira S.

Brain Dev. 2017 Jun;39(6):539-541. doi: 10.1016/j.braindev.2017.01.008. Epub 2017 Feb 13.


Number of leprosy reactions during treatment: clinical correlations and laboratory diagnosis.

Antunes DE, Ferreira GP, Nicchio MV, Araujo S, Cunha AC, Gomes RR, Costa AV, Goulart IM.

Rev Soc Bras Med Trop. 2016 Nov-Dec;49(6):741-745. doi: 10.1590/0037-8682-0440-2015.


Surgical Treatment of Erectile Dysfunction.

Bertero EB, Antunes DL.

Sex Med Rev. 2015 Oct;3(4):316-327. doi: 10.1002/smrj.60. Epub 2015 Nov 10.


Moderate sedation helps improve future behavior in pediatric dental patients - a prospective study.

Antunes DE, Viana KA, Costa PS, Costa LR.

Braz Oral Res. 2016 Oct 24;30(1):e107. doi: 10.1590/1807-3107BOR-2016.vol30.0107.


Intercellular Variability in Protein Levels from Stochastic Expression and Noisy Cell Cycle Processes.

Soltani M, Vargas-Garcia CA, Antunes D, Singh A.

PLoS Comput Biol. 2016 Aug 18;12(8):e1004972. doi: 10.1371/journal.pcbi.1004972. eCollection 2016 Aug.


Spatial and temporal epidemiology of Mycobacterium leprae infection among leprosy patients and household contacts of an endemic region in Southeast Brazil.

Nicchio MV, Araujo S, Martins LC, Pinheiro AV, Pereira DC, Borges A, Antunes DE, Barreto JG, Goulart IM.

Acta Trop. 2016 Nov;163:38-45. doi: 10.1016/j.actatropica.2016.07.019. Epub 2016 Jul 25.


Probable Person-to-Person Transmission of Legionnaires' Disease.

Correia AM, Ferreira JS, Borges V, Nunes A, Gomes B, Capucho R, Gonçalves J, Antunes DM, Almeida S, Mendes A, Guerreiro M, Sampaio DA, Vieira L, Machado J, Simões MJ, Gonçalves P, Gomes JP.

N Engl J Med. 2016 Feb 4;374(5):497-8. doi: 10.1056/NEJMc1505356. No abstract available.


Antioxidant and α-Glucosidase Inhibitory Properties and Chemical Profiles of Moroccan Propolis.

Popova M, Lyoussi B, Aazza S, Antunes D, Bankova V, Miguel G.

Nat Prod Commun. 2015 Nov;10(11):1961-4.


DockTope: a Web-based tool for automated pMHC-I modelling.

Rigo MM, Antunes DA, Vaz de Freitas M, Fabiano de Almeida Mendes M, Meira L, Sinigaglia M, Vieira GF.

Sci Rep. 2015 Dec 17;5:18413. doi: 10.1038/srep18413.

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