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Items: 33

1.

Genome Sequence and Methylation Patterns of Halorubrum sp. Strain BOL3-1, the First Haloarchaeon Isolated and Cultured from Salar de Uyuni, Bolivia.

DasSarma P, Anton BP, DasSarma S, Laye VJ, Guzman D, Roberts RJ, DasSarma S.

Microbiol Resour Announc. 2019 May 9;8(19). pii: e00386-19. doi: 10.1128/MRA.00386-19.

2.

Complete Genome Sequence and Methylome Analysis of Deinococcus wulumuqiensis 479.

Fomenkov A, Luyten Y, Vincze T, Anton BP, Roberts RJ, Morgan RD.

Microbiol Resour Announc. 2019 Mar 21;8(12). pii: e00066-19. doi: 10.1128/MRA.00066-19.

3.

Complete Genome Sequence and Methylome Analysis of Micrococcus luteus SA211, a Halophilic, Lithium-Tolerant Actinobacterium from Argentina.

Martínez FL, Anton BP, DasSarma P, Rajal V, Irazusta V, Roberts RJ, DasSarma S.

Microbiol Resour Announc. 2019 Jan 24;8(4). pii: e01557-18. doi: 10.1128/MRA.01557-18. eCollection 2019 Jan.

4.

Complete Genome Sequences of Two Rhodobacter Strains.

Anton BP, Roberts RJ, Fomenkov A, Humbert A, Stoian N, Zeilstra-Ryalls J.

Microbiol Resour Announc. 2018 Sep 27;7(12). pii: e01162-18. doi: 10.1128/MRA.01162-18. eCollection 2018 Sep.

5.

Complete Genome Sequence of the Freshwater Bacterium Beggiatoa leptomitoformis Strain D-401.

Fomenkov A, Sun Z, Vincze T, Dubinina G, Orlova M, Tarlachkov SV, Anton BP, Grabovich MY, Roberts RJ.

Genome Announc. 2018 Apr 26;6(17). pii: e00311-18. doi: 10.1128/genomeA.00311-18.

6.

The third restriction-modification system from Thermus aquaticus YT-1: solving the riddle of two TaqII specificities.

Skowron PM, Anton BP, Czajkowska E, Zebrowska J, Sulecka E, Krefft D, Jezewska-Frackowiak J, Zolnierkiewicz O, Witkowska M, Morgan RD, Wilson GG, Fomenkov A, Roberts RJ, Zylicz-Stachula A.

Nucleic Acids Res. 2017 Sep 6;45(15):9005-9018. doi: 10.1093/nar/gkx599.

7.

Complete Genome Sequence of Kluyveromyces lactis Strain GG799, a Common Yeast Host for Heterologous Protein Expression.

Chuzel L, Ganatra MB, Schermerhorn KM, Gardner AF, Anton BP, Taron CH.

Genome Announc. 2017 Jul 27;5(30). pii: e00623-17. doi: 10.1128/genomeA.00623-17.

8.

EcoBLMcrX, a classical modification-dependent restriction enzyme in Escherichia coli B: Characterization in vivo and in vitro with a new approach to cleavage site determination.

Fomenkov A, Sun Z, Dila DK, Anton BP, Roberts RJ, Raleigh EA.

PLoS One. 2017 Jun 27;12(6):e0179853. doi: 10.1371/journal.pone.0179853. eCollection 2017.

9.

Complete Genome Sequence of NEB 5-alpha, a Derivative of Escherichia coli K-12 DH5α.

Anton BP, Raleigh EA.

Genome Announc. 2016 Nov 10;4(6). pii: e01245-16. doi: 10.1128/genomeA.01245-16.

10.

Comparative Methylome Analysis of the Occasional Ruminant Respiratory Pathogen Bibersteinia trehalosi.

Anton BP, Harhay GP, Smith TP, Blom J, Roberts RJ.

PLoS One. 2016 Aug 24;11(8):e0161499. doi: 10.1371/journal.pone.0161499. eCollection 2016.

11.

Complete Genome Sequence of the Engineered Escherichia coli SHuffle Strains and Their Wild-Type Parents.

Anton BP, Fomenkov A, Raleigh EA, Berkmen M.

Genome Announc. 2016 Mar 31;4(2). pii: e00230-16. doi: 10.1128/genomeA.00230-16.

12.

Complete Genome Sequence of a Strain of Azospirillum thiophilum Isolated from a Sulfide Spring.

Fomenkov A, Vincze T, Grabovich M, Anton BP, Dubinina G, Orlova M, Belousova E, Roberts RJ.

Genome Announc. 2016 Jan 7;4(1). pii: e01521-15. doi: 10.1128/genomeA.01521-15.

13.

COMBREX-DB: an experiment centered database of protein function: knowledge, predictions and knowledge gaps.

Chang YC, Hu Z, Rachlin J, Anton BP, Kasif S, Roberts RJ, Steffen M.

Nucleic Acids Res. 2016 Jan 4;44(D1):D330-5. doi: 10.1093/nar/gkv1324. Epub 2015 Dec 3.

14.

The complete methylome of Helicobacter pylori UM032.

Lee WC, Anton BP, Wang S, Baybayan P, Singh S, Ashby M, Chua EG, Tay CY, Thirriot F, Loke MF, Goh KL, Marshall BJ, Roberts RJ, Vadivelu J.

BMC Genomics. 2015 Jun 2;16:424. doi: 10.1186/s12864-015-1585-2.

15.

Complete Genome Sequence of ER2796, a DNA Methyltransferase-Deficient Strain of Escherichia coli K-12.

Anton BP, Mongodin EF, Agrawal S, Fomenkov A, Byrd DR, Roberts RJ, Raleigh EA.

PLoS One. 2015 May 26;10(5):e0127446. doi: 10.1371/journal.pone.0127446. eCollection 2015.

16.

Complete genome sequence and methylome analysis of bacillus strain x1.

Fomenkov A, Lunnen KD, Zhu Z, Anton BP, Wilson GG, Vincze T, Roberts RJ.

Genome Announc. 2015 Feb 19;3(1). pii: e01593-14. doi: 10.1128/genomeA.01593-14.

17.

Objective: biochemical function.

Anton BP, Kasif S, Roberts RJ, Steffen M.

Front Genet. 2014 Jul 8;5:210. doi: 10.3389/fgene.2014.00210. eCollection 2014. No abstract available.

18.

The complex methylome of the human gastric pathogen Helicobacter pylori.

Krebes J, Morgan RD, Bunk B, Spröer C, Luong K, Parusel R, Anton BP, König C, Josenhans C, Overmann J, Roberts RJ, Korlach J, Suerbaum S.

Nucleic Acids Res. 2014 Feb;42(4):2415-32. doi: 10.1093/nar/gkt1201. Epub 2013 Dec 2.

19.

The COMBREX project: design, methodology, and initial results.

Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L, Pokrzywa R, Rachlin J, Swaminathan R, Allen B, Housman G, Monahan C, Rochussen K, Tao K, Bhagwat AS, Brenner SE, Columbus L, de Crécy-Lagard V, Ferguson D, Fomenkov A, Gadda G, Morgan RD, Osterman AL, Rodionov DA, Rodionova IA, Rudd KE, Söll D, Spain J, Xu SY, Bateman A, Blumenthal RM, Bollinger JM, Chang WS, Ferrer M, Friedberg I, Galperin MY, Gobeill J, Haft D, Hunt J, Karp P, Klimke W, Krebs C, Macelis D, Madupu R, Martin MJ, Miller JH, O'Donovan C, Palsson B, Ruch P, Setterdahl A, Sutton G, Tate J, Yakunin A, Tchigvintsev D, Plata G, Hu J, Greiner R, Horn D, Sjölander K, Salzberg SL, Vitkup D, Letovsky S, Segrè D, DeLisi C, Roberts RJ, Steffen M, Kasif S.

PLoS Biol. 2013;11(8):e1001638. doi: 10.1371/journal.pbio.1001638. Epub 2013 Aug 27. No abstract available.

20.

Biochemical Characterization of Hypothetical Proteins from Helicobacter pylori.

Choi HP, Juarez S, Ciordia S, Fernandez M, Bargiela R, Albar JP, Mazumdar V, Anton BP, Kasif S, Ferrer M, Steffen M.

PLoS One. 2013 Jun 18;8(6):e66605. doi: 10.1371/journal.pone.0066605. Print 2013.

21.

Thousands of missed genes found in bacterial genomes and their analysis with COMBREX.

Wood DE, Lin H, Levy-Moonshine A, Swaminathan R, Chang YC, Anton BP, Osmani L, Steffen M, Kasif S, Salzberg SL.

Biol Direct. 2012 Oct 30;7:37. doi: 10.1186/1745-6150-7-37.

22.

The methylomes of six bacteria.

Murray IA, Clark TA, Morgan RD, Boitano M, Anton BP, Luong K, Fomenkov A, Turner SW, Korlach J, Roberts RJ.

Nucleic Acids Res. 2012 Dec;40(22):11450-62. doi: 10.1093/nar/gks891. Epub 2012 Oct 2. Erratum in: Nucleic Acids Res. 2014 Apr;42(6):4140.

23.

COMBREX: a project to accelerate the functional annotation of prokaryotic genomes.

Roberts RJ, Chang YC, Hu Z, Rachlin JN, Anton BP, Pokrzywa RM, Choi HP, Faller LL, Guleria J, Housman G, Klitgord N, Mazumdar V, McGettrick MG, Osmani L, Swaminathan R, Tao KR, Letovsky S, Vitkup D, Segrè D, Salzberg SL, Delisi C, Steffen M, Kasif S.

Nucleic Acids Res. 2011 Jan;39(Database issue):D11-4. doi: 10.1093/nar/gkq1168. Epub 2010 Nov 21.

24.

Functional characterization of the YmcB and YqeV tRNA methylthiotransferases of Bacillus subtilis.

Anton BP, Russell SP, Vertrees J, Kasif S, Raleigh EA, Limbach PA, Roberts RJ.

Nucleic Acids Res. 2010 Oct;38(18):6195-205. doi: 10.1093/nar/gkq364. Epub 2010 May 14.

25.

The effect of carbon source on the secretome of Kluyveromyces lactis.

Madinger CL, Sharma SS, Anton BP, Fields LG, Cushing ML, Canovas J, Taron CH, Benner JS.

Proteomics. 2009 Oct;9(20):4744-54. doi: 10.1002/pmic.200800915.

PMID:
19743416
26.

Characterization of RimO, a new member of the methylthiotransferase subclass of the radical SAM superfamily.

Lee KH, Saleh L, Anton BP, Madinger CL, Benner JS, Iwig DF, Roberts RJ, Krebs C, Booker SJ.

Biochemistry. 2009 Oct 27;48(42):10162-74. doi: 10.1021/bi900939w.

27.

Physical and computational analysis of the yeast Kluyveromyces lactis secreted proteome.

Swaim CL, Anton BP, Sharma SS, Taron CH, Benner JS.

Proteomics. 2008 Jul;8(13):2714-23. doi: 10.1002/pmic.200700764.

PMID:
18601269
28.

RimO, a MiaB-like enzyme, methylthiolates the universally conserved Asp88 residue of ribosomal protein S12 in Escherichia coli.

Anton BP, Saleh L, Benner JS, Raleigh EA, Kasif S, Roberts RJ.

Proc Natl Acad Sci U S A. 2008 Feb 12;105(6):1826-31. doi: 10.1073/pnas.0708608105. Epub 2008 Feb 5.

29.

Phylogenetic detection of conserved gene clusters in microbial genomes.

Zheng Y, Anton BP, Roberts RJ, Kasif S.

BMC Bioinformatics. 2005 Oct 3;6:243.

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32.

Structural characterization and comparative phylogenetic analysis of Escherichia coli HemK, a protein (N5)-glutamine methyltransferase.

Yang Z, Shipman L, Zhang M, Anton BP, Roberts RJ, Cheng X.

J Mol Biol. 2004 Jul 16;340(4):695-706.

33.

Cloning and characterization of the Bg/II restriction-modification system reveals a possible evolutionary footprint.

Anton BP, Heiter DF, Benner JS, Hess EJ, Greenough L, Moran LS, Slatko BE, Brooks JE.

Gene. 1997 Mar 10;187(1):19-27.

PMID:
9073062

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