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Items: 1 to 50 of 112

1.

Competing evolutionary paths in growing populations with applications to multidrug resistance.

Nicholson MD, Antal T.

PLoS Comput Biol. 2019 Apr 15;15(4):e1006866. doi: 10.1371/journal.pcbi.1006866. eCollection 2019 Apr.

2.

Comparative analysis of plastocyanin-cytochrome f complex formation in higher plants, green algae and cyanobacteria.

Fedorov VA, Kovalenko IB, Khruschev SS, Ustinin DM, Antal TK, Riznichenko GY, Rubin AB.

Physiol Plant. 2019 May;166(1):320-335. doi: 10.1111/ppl.12940. Epub 2019 Mar 27.

PMID:
30740703
3.

Group 2 Sigma Factors are Central Regulators of Oxidative Stress Acclimation in Cyanobacteria.

Hakkila K, Valev D, Antal T, Tyystjï Rvi E, Tyystjï Rvi T.

Plant Cell Physiol. 2019 Feb 1;60(2):436-447. doi: 10.1093/pcp/pcy221.

PMID:
30407607
4.

Simulation of chlorophyll fluorescence rise and decay kinetics, and P700-related absorbance changes by using a rule-based kinetic Monte-Carlo method.

Antal TK, Maslakov A, Yakovleva OV, Krendeleva TE, Riznichenko GY, Rubin AB.

Photosynth Res. 2018 Nov;138(2):191-206. doi: 10.1007/s11120-018-0564-2. Epub 2018 Jul 30.

PMID:
30062532
5.

Chlorophyll fluorescence induction and relaxation system for the continuous monitoring of photosynthetic capacity in photobioreactors.

Antal T, Konyukhov I, Volgusheva A, Plyusnina T, Khruschev S, Kukarskikh G, Goryachev S, Rubin A.

Physiol Plant. 2019 Mar;165(3):476-486. doi: 10.1111/ppl.12693. Epub 2018 Mar 25.

PMID:
29345315
6.

Comparative analyses of H2 photoproduction in magnesium- and sulfur-starved Chlamydomonas reinhardtii cultures.

Volgusheva AA, Jokel M, Allahverdiyeva Y, Kukarskikh GP, Lukashev EP, Lambreva MD, Krendeleva TE, Antal TK.

Physiol Plant. 2017 Sep;161(1):124-137. doi: 10.1111/ppl.12576. Epub 2017 May 29.

PMID:
28386962
7.

Multiparticle Brownian dynamics simulation of experimental kinetics of cytochrome bf oxidation and photosystem I reduction by plastocyanin.

Kovalenko IB, Knyazeva OS, Antal TK, Ponomarev VY, Riznichenko GY, Rubin AB.

Physiol Plant. 2017 Sep;161(1):88-96. doi: 10.1111/ppl.12570. Epub 2017 May 18.

PMID:
28369912
8.

Acclimation to High CO2 Requires the ω Subunit of the RNA Polymerase in Synechocystis.

Kurkela J, Hakkila K, Antal T, Tyystjärvi T.

Plant Physiol. 2017 May;174(1):172-184. doi: 10.1104/pp.16.01953. Epub 2017 Mar 28.

9.

Universal Asymptotic Clone Size Distribution for General Population Growth.

Nicholson MD, Antal T.

Bull Math Biol. 2016 Nov;78(11):2243-2276. Epub 2016 Oct 20.

10.

Roles of Group 2 Sigma Factors in Acclimation of the Cyanobacterium Synechocystis sp. PCC 6803 to Nitrogen Deficiency.

Antal T, Kurkela J, Parikainen M, Kårlund A, Hakkila K, Tyystjärvi E, Tyystjärvi T.

Plant Cell Physiol. 2016 Jun;57(6):1309-18. doi: 10.1093/pcp/pcw079. Epub 2016 Apr 19.

PMID:
27095737
11.

Erratum to: Potential of carbon nanotubes in algal biotechnology.

Lambreva MD, Lavecchia T, Tyystjärvi E, Antal TK, Orlanducci S, Margonelli A, Rea G.

Photosynth Res. 2016 Apr;128(1):107-8. doi: 10.1007/s11120-016-0230-5. No abstract available.

PMID:
26865053
12.

Spatial evolution of tumors with successive driver mutations.

Antal T, Krapivsky PL, Nowak MA.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Aug;92(2):022705. Epub 2015 Aug 12.

PMID:
26382430
13.

Generation of high-value products by photosynthetic microorganisms: from sunlight to biofuels. Introduction.

Dubini A, Antal TK.

Photosynth Res. 2015 Sep;125(3):355-6. doi: 10.1007/s11120-015-0182-1. No abstract available.

14.

Cultivation of Nannochloropsis for eicosapentaenoic acid production in wastewaters of pulp and paper industry.

Polishchuk A, Valev D, Tarvainen M, Mishra S, Kinnunen V, Antal T, Yang B, Rintala J, Tyystjärvi E.

Bioresour Technol. 2015 Oct;193:469-76. doi: 10.1016/j.biortech.2015.06.135. Epub 2015 Jul 2.

PMID:
26162525
15.

Potential of carbon nanotubes in algal biotechnology.

Lambreva MD, Lavecchia T, Tyystjärvi E, Antal TK, Orlanducci S, Margonelli A, Rea G.

Photosynth Res. 2015 Sep;125(3):451-71. doi: 10.1007/s11120-015-0168-z. Epub 2015 Jun 26. Review. Erratum in: Photosynth Res. 2016 Apr;128(1):107-8.

PMID:
26113435
16.

Multiple regulatory mechanisms in the chloroplast of green algae: relation to hydrogen production.

Antal TK, Krendeleva TE, Tyystjärvi E.

Photosynth Res. 2015 Sep;125(3):357-81. doi: 10.1007/s11120-015-0157-2. Epub 2015 May 19.

PMID:
25986411
17.

Oxidative stress and photoinhibition can be separated in the cyanobacterium Synechocystis sp. PCC 6803.

Hakkila K, Antal T, Rehman AU, Kurkela J, Wada H, Vass I, Tyystjärvi E, Tyystjärvi T.

Biochim Biophys Acta. 2014 Feb;1837(2):217-25. doi: 10.1016/j.bbabio.2013.11.011. Epub 2013 Nov 22.

18.

Photosynthesis-related quantities for education and modeling.

Antal TK, Kovalenko IB, Rubin AB, Tyystjärvi E.

Photosynth Res. 2013 Nov;117(1-3):1-30. doi: 10.1007/s11120-013-9945-8. Epub 2013 Oct 26. Review.

PMID:
24162971
19.

Group 2 sigma factor mutant ΔsigCDE of the cyanobacterium Synechocystis sp. PCC 6803 reveals functionality of both carotenoids and flavodiiron proteins in photoprotection of photosystem II.

Hakkila K, Antal T, Gunnelius L, Kurkela J, Matthijs HC, Tyystjärvi E, Tyystjärvi T.

Plant Cell Physiol. 2013 Nov;54(11):1780-90. doi: 10.1093/pcp/pct123. Epub 2013 Sep 4.

PMID:
24009334
20.

Evolutionary dynamics of cancer in response to targeted combination therapy.

Bozic I, Reiter JG, Allen B, Antal T, Chatterjee K, Shah P, Moon YS, Yaqubie A, Kelly N, Le DT, Lipson EJ, Chapman PB, Diaz LA Jr, Vogelstein B, Nowak MA.

Elife. 2013 Jun 25;2:e00747. doi: 10.7554/eLife.00747.

21.

The effects of ulipristal on Bax/Bcl-2, cytochrome c, Ki-67 and cyclooxygenase-2 expression in a rat model with surgically induced endometriosis.

Huniadi CA, Pop OL, Antal TA, Stamatian F.

Eur J Obstet Gynecol Reprod Biol. 2013 Jul;169(2):360-5. doi: 10.1016/j.ejogrb.2013.03.022. Epub 2013 Apr 22.

PMID:
23619346
22.

Antimycin A effect on the electron transport in chloroplasts of two Chlamydomonas reinhardtii strains.

Antal TK, Kukarskikh GP, Bulychev AA, Tyystjärvi E, Krendeleva T.

Planta. 2013 May;237(5):1241-50. doi: 10.1007/s00425-013-1843-y. Epub 2013 Jan 26.

PMID:
23354456
23.

Study of the effect of reducing conditions on the initial chlorophyll fluorescence rise in the green microalgae Chlamydomonas reinhardtii.

Antal TK, Kolacheva A, Maslakov A, Riznichenko GY, Krendeleva TE, Rubin AB.

Photosynth Res. 2013 Mar;114(3):143-54. doi: 10.1007/s11120-012-9789-7. Epub 2012 Nov 27.

PMID:
23188059
24.

Molecular spiders on a plane.

Antal T, Krapivsky PL.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Jun;85(6 Pt 1):061927. Epub 2012 Jun 29.

PMID:
23005147
25.

Membrane potential is involved in regulation of photosynthetic reactions in the marine diatom Thalassiosira weissflogii.

Antal TK, Osipov V, Matorin DN, Rubin AB.

J Photochem Photobiol B. 2011 Feb 7;102(2):169-73. doi: 10.1016/j.jphotobiol.2010.11.005. Epub 2010 Nov 18.

PMID:
21131210
26.

Distant metastasis occurs late during the genetic evolution of pancreatic cancer.

Yachida S, Jones S, Bozic I, Antal T, Leary R, Fu B, Kamiyama M, Hruban RH, Eshleman JR, Nowak MA, Velculescu VE, Kinzler KW, Vogelstein B, Iacobuzio-Donahue CA.

Nature. 2010 Oct 28;467(7319):1114-7. doi: 10.1038/nature09515.

27.

Acclimation of green algae to sulfur deficiency: underlying mechanisms and application for hydrogen production.

Antal TK, Krendeleva TE, Rubin AB.

Appl Microbiol Biotechnol. 2011 Jan;89(1):3-15. doi: 10.1007/s00253-010-2879-6. Epub 2010 Sep 28. Review.

PMID:
20878321
28.

Accumulation of driver and passenger mutations during tumor progression.

Bozic I, Antal T, Ohtsuki H, Carter H, Kim D, Chen S, Karchin R, Kinzler KW, Vogelstein B, Nowak MA.

Proc Natl Acad Sci U S A. 2010 Oct 26;107(43):18545-50. doi: 10.1073/pnas.1010978107. Epub 2010 Sep 27.

29.

Acclimation of photosynthesis to nitrogen deficiency in Phaseolus vulgaris.

Antal T, Mattila H, Hakala-Yatkin M, Tyystjärvi T, Tyystjärvi E.

Planta. 2010 Sep;232(4):887-98. doi: 10.1007/s00425-010-1227-5. Epub 2010 Jul 15.

PMID:
20632184
30.

Effect of stalling after mismatches on the error catastrophe in nonenzymatic nucleic acid replication.

Rajamani S, Ichida JK, Antal T, Treco DA, Leu K, Nowak MA, Szostak JW, Chen IA.

J Am Chem Soc. 2010 Apr 28;132(16):5880-5. doi: 10.1021/ja100780p.

31.

Competition-colonization dynamics in an RNA virus.

Ojosnegros S, Beerenwinkel N, Antal T, Nowak MA, Escarmís C, Domingo E.

Proc Natl Acad Sci U S A. 2010 Feb 2;107(5):2108-12. doi: 10.1073/pnas.0909787107. Epub 2010 Jan 13.

32.

Evolutionary dynamics in structured populations.

Nowak MA, Tarnita CE, Antal T.

Philos Trans R Soc Lond B Biol Sci. 2010 Jan 12;365(1537):19-30. doi: 10.1098/rstb.2009.0215. Review.

33.
34.

Probing of photosynthetic reactions in four phytoplanktonic algae with a PEA fluorometer.

Antal TK, Matorin DN, Ilyash LV, Volgusheva AA, Osipov V, Konyuhov IV, Krendeleva TE, Rubin AB.

Photosynth Res. 2009 Oct;102(1):67-76. doi: 10.1007/s11120-009-9491-6.

PMID:
19731073
35.

Shepherd model for knot-limited polymer ejection from a capsid.

Antal T, Krapivsky PL, Redner S.

J Theor Biol. 2009 Dec 7;261(3):488-93. doi: 10.1016/j.jtbi.2009.08.021. Epub 2009 Aug 22.

PMID:
19703473
36.

Mutation-selection equilibrium in games with mixed strategies.

Tarnita CE, Antal T, Nowak MA.

J Theor Biol. 2009 Nov 7;261(1):50-7. doi: 10.1016/j.jtbi.2009.07.028. Epub 2009 Jul 29.

37.
38.

Evolutionary dynamics in set structured populations.

Tarnita CE, Antal T, Ohtsuki H, Nowak MA.

Proc Natl Acad Sci U S A. 2009 May 26;106(21):8601-4. doi: 10.1073/pnas.0903019106. Epub 2009 May 11.

39.

Evolution of cooperation by phenotypic similarity.

Antal T, Ohtsuki H, Wakeley J, Taylor PD, Nowak MA.

Proc Natl Acad Sci U S A. 2009 May 26;106(21):8597-600. doi: 10.1073/pnas.0902528106. Epub 2009 Apr 29.

40.

Progenitor cell self-renewal and cyclic neutropenia.

Dingli D, Antal T, Traulsen A, Pacheco JM.

Cell Prolif. 2009 Jun;42(3):330-8. doi: 10.1111/j.1365-2184.2009.00598.x. Epub 2009 Apr 21.

41.

Strategy selection in structured populations.

Tarnita CE, Ohtsuki H, Antal T, Fu F, Nowak MA.

J Theor Biol. 2009 Aug 7;259(3):570-81. doi: 10.1016/j.jtbi.2009.03.035. Epub 2009 Apr 7.

42.

Logarithmic current fluctuations in nonequilibrium quantum spin chains.

Antal T, Krapivsky PL, Rákos A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Dec;78(6 Pt 1):061115. Epub 2008 Dec 16.

PMID:
19256810
43.

Mutation-selection equilibrium in games with multiple strategies.

Antal T, Traulsen A, Ohtsuki H, Tarnita CE, Nowak MA.

J Theor Biol. 2009 Jun 21;258(4):614-22. doi: 10.1016/j.jtbi.2009.02.010. Epub 2009 Feb 24.

44.

Illumination with ultraviolet or visible light induces chemical changes in the water-soluble manganese complex, [Mn(4)O(6)(bpea)(4)]Br(4).

Antal TK, Lo W, Armstrong WH, Tyystjärvi E.

Photochem Photobiol. 2009 May-Jun;85(3):663-8. doi: 10.1111/j.1751-1097.2008.00502.x. Epub 2009 Jan 13.

PMID:
19192207
45.

Early modification of c-myc, Ha-ras and p53 expressions by N-methyl-N-nitrosourea.

Budán F, Varjas T, Nowrasteh G, Varga Z, Boncz I, Cseh J, Prantner I, Antal T, Pázsit E, Gobel G, Bauer M, Gracza T, Perjési P, Ember I, Gyöngyi Z.

In Vivo. 2008 Nov-Dec;22(6):793-7.

46.

Strategy abundance in 2x2 games for arbitrary mutation rates.

Antal T, Nowak MA, Traulsen A.

J Theor Biol. 2009 Mar 21;257(2):340-4. doi: 10.1016/j.jtbi.2008.11.023. Epub 2008 Dec 6.

47.

Hydrogen production by photoautotrophic sulfur-deprived Chlamydomonas reinhardtii pre-grown and incubated under high light.

Tolstygina IV, Antal TK, Kosourov SN, Krendeleva TE, Rubin AB, Tsygankov AA.

Biotechnol Bioeng. 2009 Mar 1;102(4):1055-61. doi: 10.1002/bit.22148.

PMID:
18985615
48.

[Effect of dibromothymoquinone on chlorophyll a fluorescence in Chlamydomonas reinhardtii cells incubated in complete or sulfur-depleted medium].

Volgusheva AA, Kukarskikh GP, Antal TK, Lavrukhina OG, Krendeleva TE, Rubin AB.

Biofizika. 2008 Sep-Oct;53(5):787-96. Russian.

PMID:
18954006
49.

Cyclic neutropenia in mammals.

Pacheco JM, Traulsen A, Antal T, Dingli D.

Am J Hematol. 2008 Dec;83(12):920-1. doi: 10.1002/ajh.21295.

50.

Exciting hard spheres.

Antal T, Krapivsky PL, Redner S.

Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Sep;78(3 Pt 1):030301. Epub 2008 Sep 4.

PMID:
18850983

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