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Items: 1 to 50 of 67

1.

Epidemic as a natural process.

Koivu-Jolma M, Annila A.

Math Biosci. 2018 May;299:97-102. doi: 10.1016/j.mbs.2018.03.012. Epub 2018 Mar 10.

PMID:
29534891
2.

Discourse on order vs. disorder.

Annila A, Baverstock K.

Commun Integr Biol. 2016 Jul 22;9(4):e1187348. doi: 10.1080/19420889.2016.1187348. eCollection 2016 Jul-Aug.

3.

On the Character of Consciousness.

Annila A.

Front Syst Neurosci. 2016 Mar 30;10:27. doi: 10.3389/fnsys.2016.00027. eCollection 2016.

4.

On the divide between animate and inanimate.

Annila A, Kolehmainen E.

J Syst Chem. 2015;6(1):2. Epub 2015 Feb 19.

5.

Genes without prominence: a reappraisal of the foundations of biology.

Annila A, Baverstock K.

J R Soc Interface. 2014 Feb 19;11(94):20131017. doi: 10.1098/rsif.2013.1017. Print 2014 May 6.

6.

The significance of sex.

Annila A, Annila E.

Biosystems. 2012 Dec;110(3):156-61. doi: 10.1016/j.biosystems.2012.09.006. Epub 2012 Oct 9.

PMID:
23063598
7.

Discovery and structural characterization of a phospholamban-binding cyclic peptide and design of novel inhibitors of phospholamban.

Tilgmann C, Pollesello P, Ovaska M, Kaivola J, Pystynen J, Tiainen E, Yliperttula M, Annila A, Levijoki J.

Chem Biol Drug Des. 2013 Apr;81(4):463-73. doi: 10.1111/j.1747-0285.2012.01409.x. Epub 2012 Jun 6.

PMID:
22578098
8.

The capricious character of nature.

Keto J, Annila A.

Life (Basel). 2012 Jan 11;2(1):165-9. doi: 10.3390/life2010165.

9.

Looking for the Last Universal Common Ancestor (LUCA).

Koskela M, Annila A.

Genes (Basel). 2012 Jan 9;3(1):81-7. doi: 10.3390/genes3010081.

10.

Natural patterns of energy dispersal.

Mäkelä T, Annila A.

Phys Life Rev. 2010 Dec;7(4):477-98. doi: 10.1016/j.plrev.2010.10.001. Epub 2010 Oct 13. Review.

PMID:
21030325
11.

Ecological succession as an energy dispersal process.

Würtz P, Annila A.

Biosystems. 2010 Apr;100(1):70-8. doi: 10.1016/j.biosystems.2010.01.004. Epub 2010 Jan 25.

PMID:
20097257
12.

Natural hierarchy emerges from energy dispersal.

Annila A, Kuismanen E.

Biosystems. 2009 Mar;95(3):227-33. doi: 10.1016/j.biosystems.2008.10.008. Epub 2008 Nov 6.

PMID:
19038306
13.

Gaia again.

Karnani M, Annila A.

Biosystems. 2009 Jan;95(1):82-7. doi: 10.1016/j.biosystems.2008.07.003. Epub 2008 Jul 29.

PMID:
18706969
14.

The driving force behind genomic diversity.

Jaakkola S, El-Showk S, Annila A.

Biophys Chem. 2008 May;134(3):232-8. doi: 10.1016/j.bpc.2008.02.006. Epub 2008 Feb 23. Retraction in: Biophys Chem. 2008 Jul;136(1):66.

PMID:
18329784
15.

Roots of diversity relations.

Würtz P, Annila A.

J Biophys. 2008;2008:654672. doi: 10.1155/2008/654672. Epub 2008 Dec 11.

16.

Natural distribution.

Grönholm T, Annila A.

Math Biosci. 2007 Dec;210(2):659-67. Epub 2007 Aug 6.

PMID:
17822723
17.

Evidence of molecular alignment fluctuations in aqueous dilute liquid crystalline media.

Louhivuori M, Otten R, Salminen T, Annila A.

J Biomol NMR. 2007 Oct;39(2):141-52. Epub 2007 Aug 15.

18.

Structural basis and evolutionary origin of actin filament capping by twinfilin.

Paavilainen VO, Hellman M, Helfer E, Bovellan M, Annila A, Carlier MF, Permi P, Lappalainen P.

Proc Natl Acad Sci U S A. 2007 Feb 27;104(9):3113-8. Epub 2007 Feb 20.

19.

Natural process--natural selection.

Sharma V, Annila A.

Biophys Chem. 2007 Apr;127(1-2):123-8. Epub 2007 Jan 24.

PMID:
17289252
20.

NMR assignment of the C-terminal ADF-H domain of an actin monomer binding protein, twinfilin.

Hellman M, Paavilainen VO, Annila A, Lappalainen P, Permi P.

J Biomol NMR. 2006;36 Suppl 1:66. Epub 2006 Aug 22. No abstract available.

PMID:
16924408
21.

Peptide binding and NMR analysis of the interaction between SAP97 PDZ2 and GluR-A: potential involvement of a disulfide bond.

von Ossowski L, Tossavainen H, von Ossowski I, Cai C, Aitio O, Fredriksson K, Permi P, Annila A, Keinänen K.

Biochemistry. 2006 May 2;45(17):5567-75.

PMID:
16634638
22.

Conformational fluctuations affect protein alignment in dilute liquid crystal media.

Louhivuori M, Otten R, Lindorff-Larsen K, Annila A.

J Am Chem Soc. 2006 Apr 5;128(13):4371-6.

PMID:
16569014
23.

The presence of Lys27 instead of Asn27 in human phospholamban promotes sarcoplasmic reticulum Ca2+-ATPase superinhibition and cardiac remodeling.

Zhao W, Yuan Q, Qian J, Waggoner JR, Pathak A, Chu G, Mitton B, Sun X, Jin J, Braz JC, Hahn HS, Marreez Y, Syed F, Pollesello P, Annila A, Wang HS, Schultz Jel J, Molkentin JD, Liggett SB, Dorn GW 2nd, Kranias EG.

Circulation. 2006 Feb 21;113(7):995-1004. Epub 2006 Feb 13.

24.

Solution structure of the Ca2+-Binding EGF3-4 pair from vitamin K-dependent protein S: identification of an unusual fold in EGF3.

Drakenberg T, Ghasriani H, Thulin E, Thämlitz AM, Muranyi A, Annila A, Stenflo J.

Biochemistry. 2005 Jun 21;44(24):8782-9.

PMID:
15952784
25.

Radionuclide imaging of tumor xenografts in mice using a gelatinase-targeting peptide.

Medina OP, Kairemo K, Valtanen H, Kangasniemi A, Kaukinen S, Ahonen I, Permi P, Annila A, Sneck M, Holopainen JM, Karonen SL, Kinnunen PK, Koivunen E.

Anticancer Res. 2005 Jan-Feb;25(1A):33-42.

26.

(1)H, (13)C and (15)N resonance assignments of coactosin, a cytoskeletal regulatory protein.

Hellman M, Paavilainen V, Annila A, Lappalainen P, Permi P.

J Biomol NMR. 2004 Nov;30(3):365-6. No abstract available.

PMID:
15756466
27.

Enhanced ligand affinity for receptors in which components of the binding site are independently mobile.

Trevitt CR, Craven CJ, Milanesi L, Syson K, Mattinen ML, Perkins J, Annila A, Hunter CA, Waltho JP.

Chem Biol. 2005 Jan;12(1):89-97.

28.

Solution structure of coactosin reveals structural homology to ADF/cofilin family proteins.

Hellman M, Paavilainen VO, Naumanen P, Lappalainen P, Annila A, Permi P.

FEBS Lett. 2004 Oct 8;576(1-2):91-6.

29.

On the interpretation of residual dipolar couplings as reporters of molecular dynamics.

Fredriksson K, Louhivuori M, Permi P, Annila A.

J Am Chem Soc. 2004 Oct 6;126(39):12646-50.

PMID:
15453798
30.

Alignment of chain-like molecules.

Louhivuori M, Fredriksson K, Pääkkönen K, Permi P, Annila A.

J Biomol NMR. 2004 Aug;29(4):517-24.

PMID:
15243182
31.

On the origin of residual dipolar couplings from denatured proteins.

Louhivuori M, Pääkkönen K, Fredriksson K, Permi P, Lounila J, Annila A.

J Am Chem Soc. 2003 Dec 17;125(50):15647-50.

PMID:
14664613
32.

NMR solution structure of calerythrin, an EF-hand calcium-binding protein from Saccharopolyspora erythraea.

Tossavainen H, Permi P, Annila A, Kilpeläinen I, Drakenberg T.

Eur J Biochem. 2003 Jun;270(11):2505-12.

33.

Structural and functional implications of the phospholamban hinge domain: impaired SR Ca2+ uptake as a primary cause of heart failure.

Schmidt AG, Zhai J, Carr AN, Gerst MJ, Lorenz JN, Pollesello P, Annila A, Hoit BD, Kranias EG.

Cardiovasc Res. 2002 Nov;56(2):248-59.

PMID:
12393095
34.

Quaternary structure built from subunits combining NMR and small-angle x-ray scattering data.

Mattinen ML, Pääkkönen K, Ikonen T, Craven J, Drakenberg T, Serimaa R, Waltho J, Annila A.

Biophys J. 2002 Aug;83(2):1177-83.

35.
36.

Evaluation and optimization of coherence transfer in high molecular weight systems.

Permi P, Annila A.

J Magn Reson. 2002 Mar;155(1):123-30.

PMID:
11945041
37.

A new approach for obtaining sequential assignment of large proteins.

Permi P, Annila A.

J Biomol NMR. 2001 Jun;20(2):127-33.

PMID:
11495244
38.

Inhibition of beta(2) integrin-mediated leukocyte cell adhesion by leucine-leucine-glycine motif-containing peptides.

Koivunen E, Ranta TM, Annila A, Taube S, Uppala A, Jokinen M, van Willigen G, Ihanus E, Gahmberg CG.

J Cell Biol. 2001 May 28;153(5):905-16.

39.

Characterization of apo and partially saturated states of calerythrin, an EF-hand protein from S. erythraea: a molten globule when deprived of Ca(2+).

Aitio H, Laakso T, Pihlajamaa T, Torkkeli M, Kilpeläinen I, Drakenberg T, Serimaa R, Annila A.

Protein Sci. 2001 Jan;10(1):74-82.

40.

Binding of levosimendan, a calcium sensitizer, to cardiac troponin C.

Sorsa T, Heikkinen S, Abbott MB, Abusamhadneh E, Laakso T, Tilgmann C, Serimaa R, Annila A, Rosevear PR, Drakenberg T, Pollesello P, Kilpelainen I.

J Biol Chem. 2001 Mar 23;276(12):9337-43. Epub 2000 Dec 11.

41.

Conformations of the regulatory domain of cardiac troponin C examined by residual dipolar couplings.

Pääkkönen K, Sorsa T, Drakenberg T, Pollesello P, Tilgmann C, Permi P, Heikkinen S, Kilpeläinen I, Annila A.

Eur J Biochem. 2000 Nov;267(22):6665-72.

42.

Determination of backbone angle psi in proteins using a TROSY-based alpha/beta-HN(CO)CA-J experiment.

Permi P, Kilpeläinen I, Annila A.

J Magn Reson. 2000 Oct;146(2):255-9.

PMID:
11001841
43.
44.
45.

Further evidence for the cardiac troponin C mediated calcium sensitization by levosimendan: structure-response and binding analysis with analogs of levosimendan.

Levijoki J, Pollesello P, Kaivola J, Tilgmann C, Sorsa T, Annila A, Kilpeläinen I, Haikala H.

J Mol Cell Cardiol. 2000 Mar;32(3):479-91.

PMID:
10731446
46.

Intensity modulated HSQC and HMQC: two simple methods to measure 3J(HNH)alpha in proteins.

Permi P, Kilpeläinen I, Annila A, Heikkinen S.

J Biomol NMR. 2000 Jan;16(1):29-37.

PMID:
10718610
47.

NMR assignments, secondary structure, and global fold of calerythrin, an EF-hand calcium-binding protein from Saccharopolyspora erythraea.

Aitio H, Annila A, Heikkinen S, Thulin E, Drakenberg T, Kilpeläinen I.

Protein Sci. 1999 Dec;8(12):2580-8.

48.

HN(alpha/beta-COCA-J) experiment for measurement of (1)J(C'C(alpha)) couplings from two-dimensional

Permi P, Sorsa T, Kilpelainen I I, Annila A.

J Magn Reson. 1999 Nov;141(1):44-51.

PMID:
10527742
49.

Measurement of (1)J(NC') and (2)J(H(N))(C') couplings from spin-state-selective two-dimensional correlation spectrum.

Permi P, Heikkinen S, Kilpeläinen I, Annila A.

J Magn Reson. 1999 Sep;140(1):32-40.

PMID:
10479547
50.

Measurement of homonuclear (2)J-couplings from spin-state selective double-/zero-quantum two-dimensional NMR spectra.

Permi P, Heikkinen S, Kilpeläinen I, Annila A.

J Magn Reson. 1999 Aug;139(2):273-80.

PMID:
10423364

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