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Items: 1 to 50 of 126

1.

Comprehensive phenotyping reveals interactions and functions of Arabidopsis thaliana TCP genes in yield determination.

van Es SW, van der Auweraert EB, Silveira SR, Angenent GC, van Dijk ADJ, Immink RGH.

Plant J. 2019 Jul;99(2):316-328. doi: 10.1111/tpj.14326. Epub 2019 Apr 29.

PMID:
30903633
2.

Re-evaluation of transcription factor function in tomato fruit development and ripening with CRISPR/Cas9-mutagenesis.

Wang R, Tavano ECDR, Lammers M, Martinelli AP, Angenent GC, de Maagd RA.

Sci Rep. 2019 Feb 8;9(1):1696. doi: 10.1038/s41598-018-38170-6.

3.

PISTILLATA paralogs in Tarenaya hassleriana have diverged in interaction specificity.

de Bruijn S, Zhao T, Muiño JM, Schranz EM, Angenent GC, Kaufmann K.

BMC Plant Biol. 2018 Dec 22;18(1):368. doi: 10.1186/s12870-018-1574-0.

4.

Arabidopsis thaliana ambient temperature responsive lncRNAs.

Severing E, Faino L, Jamge S, Busscher M, Kuijer-Zhang Y, Bellinazzo F, Busscher-Lange J, Fernández V, Angenent GC, Immink RGH, Pajoro A.

BMC Plant Biol. 2018 Jul 13;18(1):145. doi: 10.1186/s12870-018-1362-x.

5.

Comparative analysis of binding patterns of MADS-domain proteins in Arabidopsis thaliana.

Aerts N, de Bruijn S, van Mourik H, Angenent GC, van Dijk ADJ.

BMC Plant Biol. 2018 Jun 25;18(1):131. doi: 10.1186/s12870-018-1348-8.

6.

Novel functions of the Arabidopsis transcription factor TCP5 in petal development and ethylene biosynthesis.

van Es SW, Silveira SR, Rocha DI, Bimbo A, Martinelli AP, Dornelas MC, Angenent GC, Immink RGH.

Plant J. 2018 Jun;94(5):867-879. doi: 10.1111/tpj.13904. Epub 2018 Apr 25.

7.

Genetic control of meristem arrest and life span in Arabidopsis by a FRUITFULL-APETALA2 pathway.

Balanzà V, Martínez-Fernández I, Sato S, Yanofsky MF, Kaufmann K, Angenent GC, Bemer M, Ferrándiz C.

Nat Commun. 2018 Feb 8;9(1):565. doi: 10.1038/s41467-018-03067-5.

8.

Divergent regulation of Arabidopsis SAUR genes: a focus on the SAUR10-clade.

van Mourik H, van Dijk ADJ, Stortenbeker N, Angenent GC, Bemer M.

BMC Plant Biol. 2017 Dec 19;17(1):245. doi: 10.1186/s12870-017-1210-4.

9.

A cautionary note on the use of chromosome conformation capture in plants.

Jamge S, Stam M, Angenent GC, Immink RGH.

Plant Methods. 2017 Nov 16;13:101. doi: 10.1186/s13007-017-0251-x. eCollection 2017.

10.

Identification of In Planta Protein-Protein Interactions Using IP-MS.

Jamge S, Angenent GC, Bemer M.

Methods Mol Biol. 2018;1675:315-329. doi: 10.1007/978-1-4939-7318-7_18.

PMID:
29052199
11.

Profiling Nucleosome Occupancy by MNase-seq: Experimental Protocol and Computational Analysis.

Pajoro A, Muiño JM, Angenent GC, Kaufmann K.

Methods Mol Biol. 2018;1675:167-181. doi: 10.1007/978-1-4939-7318-7_11.

PMID:
29052192
12.

A plant-based chemical genomics screen for the identification of flowering inducers.

Fiers M, Hoogenboom J, Brunazzi A, Wennekes T, Angenent GC, Immink RGH.

Plant Methods. 2017 Oct 3;13:78. doi: 10.1186/s13007-017-0230-2. eCollection 2017.

13.

The BABY BOOM Transcription Factor Activates the LEC1-ABI3-FUS3-LEC2 Network to Induce Somatic Embryogenesis.

Horstman A, Li M, Heidmann I, Weemen M, Chen B, Muino JM, Angenent GC, Boutilier K.

Plant Physiol. 2017 Oct;175(2):848-857. doi: 10.1104/pp.17.00232. Epub 2017 Aug 22.

14.

Differences in DNA Binding Specificity of Floral Homeotic Protein Complexes Predict Organ-Specific Target Genes.

Smaczniak C, Muiño JM, Chen D, Angenent GC, Kaufmann K.

Plant Cell. 2017 Aug;29(8):1822-1835. doi: 10.1105/tpc.17.00145. Epub 2017 Jul 21.

15.

SELEX-Seq: A Method to Determine DNA Binding Specificities of Plant Transcription Factors.

Smaczniak C, Angenent GC, Kaufmann K.

Methods Mol Biol. 2017;1629:67-82. doi: 10.1007/978-1-4939-7125-1_6.

PMID:
28623580
16.

FRUITFULL controls SAUR10 expression and regulates Arabidopsis growth and architecture.

Bemer M, van Mourik H, Muiño JM, Ferrándiz C, Kaufmann K, Angenent GC.

J Exp Bot. 2017 Jun 15;68(13):3391-3403. doi: 10.1093/jxb/erx184.

17.

Phylogenomic Synteny Network Analysis of MADS-Box Transcription Factor Genes Reveals Lineage-Specific Transpositions, Ancient Tandem Duplications, and Deep Positional Conservation.

Zhao T, Holmer R, de Bruijn S, Angenent GC, van den Burg HA, Schranz ME.

Plant Cell. 2017 Jun;29(6):1278-1292. doi: 10.1105/tpc.17.00312. Epub 2017 Jun 5.

18.

Histone H3 lysine 36 methylation affects temperature-induced alternative splicing and flowering in plants.

Pajoro A, Severing E, Angenent GC, Immink RGH.

Genome Biol. 2017 Jun 1;18(1):102. doi: 10.1186/s13059-017-1235-x.

19.

Splicing-related genes are alternatively spliced upon changes in ambient temperatures in plants.

Verhage L, Severing EI, Bucher J, Lammers M, Busscher-Lange J, Bonnema G, Rodenburg N, Proveniers MC, Angenent GC, Immink RG.

PLoS One. 2017 Mar 3;12(3):e0172950. doi: 10.1371/journal.pone.0172950. eCollection 2017.

20.

Cross-Family Transcription Factor Interactions: An Additional Layer of Gene Regulation.

Bemer M, van Dijk ADJ, Immink RGH, Angenent GC.

Trends Plant Sci. 2017 Jan;22(1):66-80. doi: 10.1016/j.tplants.2016.10.007. Epub 2016 Nov 1. Review.

PMID:
27814969
21.

Low Temperature Affects Stem Cell Maintenance in Brassica oleracea Seedlings.

de Jonge J, Kodde J, Severing EI, Bonnema G, Angenent GC, Immink RG, Groot SP.

Front Plant Sci. 2016 Jun 8;7:800. doi: 10.3389/fpls.2016.00800. eCollection 2016.

22.

Evolution of DNA-Binding Sites of a Floral Master Regulatory Transcription Factor.

Muiño JM, de Bruijn S, Pajoro A, Geuten K, Vingron M, Angenent GC, Kaufmann K.

Mol Biol Evol. 2016 Jan;33(1):185-200. doi: 10.1093/molbev/msv210. Epub 2015 Oct 1.

23.

Characterization of in vivo DNA-binding events of plant transcription factors by ChIP-seq: experimental protocol and computational analysis.

van Mourik H, Muiño JM, Pajoro A, Angenent GC, Kaufmann K.

Methods Mol Biol. 2015;1284:93-121. doi: 10.1007/978-1-4939-2444-8_5.

PMID:
25757769
24.

A quantitative and dynamic model of the Arabidopsis flowering time gene regulatory network.

Leal Valentim F, Mourik Sv, Posé D, Kim MC, Schmid M, van Ham RC, Busscher M, Sanchez-Perez GF, Molenaar J, Angenent GC, Immink RG, van Dijk AD.

PLoS One. 2015 Feb 26;10(2):e0116973. doi: 10.1371/journal.pone.0116973. eCollection 2015.

25.

The cell size distribution of tomato fruit can be changed by overexpression of CDKA1.

Czerednik A, Busscher M, Angenent GC, de Maagd RA.

Plant Biotechnol J. 2015 Feb;13(2):259-68. doi: 10.1111/pbi.12268. Epub 2014 Oct 4.

26.

Transcriptional control of fleshy fruit development and ripening.

Karlova R, Chapman N, David K, Angenent GC, Seymour GB, de Maagd RA.

J Exp Bot. 2014 Aug;65(16):4527-41. doi: 10.1093/jxb/eru316. Review.

PMID:
25080453
27.

Plasticity in Cell Division Patterns and Auxin Transport Dependency during in Vitro Embryogenesis in Brassica napus.

Soriano M, Li H, Jacquard C, Angenent GC, Krochko J, Offringa R, Boutilier K.

Plant Cell. 2014 Jun;26(6):2568-2581. Epub 2014 Jun 20.

28.

The (r)evolution of gene regulatory networks controlling Arabidopsis plant reproduction: a two-decade history.

Pajoro A, Biewers S, Dougali E, Leal Valentim F, Mendes MA, Porri A, Coupland G, Van de Peer Y, van Dijk AD, Colombo L, Davies B, Angenent GC.

J Exp Bot. 2014 Sep;65(17):4731-45. doi: 10.1093/jxb/eru233. Epub 2014 Jun 9. Review.

PMID:
24913630
29.

Identification, cloning and characterization of the tomato TCP transcription factor family.

Parapunova V, Busscher M, Busscher-Lange J, Lammers M, Karlova R, Bovy AG, Angenent GC, de Maagd RA.

BMC Plant Biol. 2014 Jun 6;14:157. doi: 10.1186/1471-2229-14-157.

30.

Research on floral timing by ambient temperature comes into blossom.

Verhage L, Angenent GC, Immink RG.

Trends Plant Sci. 2014 Sep;19(9):583-91. doi: 10.1016/j.tplants.2014.03.009. Epub 2014 Apr 27. Review.

PMID:
24780095
31.

Phytoplasma effector SAP54 hijacks plant reproduction by degrading MADS-box proteins and promotes insect colonization in a RAD23-dependent manner.

MacLean AM, Orlovskis Z, Kowitwanich K, Zdziarska AM, Angenent GC, Immink RG, Hogenhout SA.

PLoS Biol. 2014 Apr 8;12(4):e1001835. doi: 10.1371/journal.pbio.1001835. eCollection 2014 Apr.

32.

Dynamics of chromatin accessibility and gene regulation by MADS-domain transcription factors in flower development.

Pajoro A, Madrigal P, Muiño JM, Matus JT, Jin J, Mecchia MA, Debernardi JM, Palatnik JF, Balazadeh S, Arif M, Ó'Maoiléidigh DS, Wellmer F, Krajewski P, Riechmann JL, Angenent GC, Kaufmann K.

Genome Biol. 2014 Mar 3;15(3):R41. doi: 10.1186/gb-2014-15-3-r41.

33.

Transcriptional coordination between leaf cell differentiation and chloroplast development established by TCP20 and the subgroup Ib bHLH transcription factors.

Andriankaja ME, Danisman S, Mignolet-Spruyt LF, Claeys H, Kochanke I, Vermeersch M, De Milde L, De Bodt S, Storme V, Skirycz A, Maurer F, Bauer P, Mühlenbock P, Van Breusegem F, Angenent GC, Immink RG, Inzé D.

Plant Mol Biol. 2014 Jun;85(3):233-45. doi: 10.1007/s11103-014-0180-2. Epub 2014 Feb 19.

PMID:
24549883
34.

Tetramer formation in Arabidopsis MADS domain proteins: analysis of a protein-protein interaction network.

Espinosa-Soto C, Immink RG, Angenent GC, Alvarez-Buylla ER, de Folter S.

BMC Syst Biol. 2014 Jan 27;8:9. doi: 10.1186/1752-0509-8-9.

35.

The histone deacetylase inhibitor trichostatin a promotes totipotency in the male gametophyte.

Li H, Soriano M, Cordewener J, Muiño JM, Riksen T, Fukuoka H, Angenent GC, Boutilier K.

Plant Cell. 2014 Jan;26(1):195-209. doi: 10.1105/tpc.113.116491. Epub 2014 Jan 24.

36.

Structural determinants of DNA recognition by plant MADS-domain transcription factors.

Muiño JM, Smaczniak C, Angenent GC, Kaufmann K, van Dijk AD.

Nucleic Acids Res. 2014 Feb;42(4):2138-46. doi: 10.1093/nar/gkt1172. Epub 2013 Nov 25.

37.

Analysis of functional redundancies within the Arabidopsis TCP transcription factor family.

Danisman S, van Dijk AD, Bimbo A, van der Wal F, Hennig L, de Folter S, Angenent GC, Immink RG.

J Exp Bot. 2013 Dec;64(18):5673-85. doi: 10.1093/jxb/ert337. Epub 2013 Oct 15.

38.

Temperature-dependent regulation of flowering by antagonistic FLM variants.

Posé D, Verhage L, Ott F, Yant L, Mathieu J, Angenent GC, Immink RG, Schmid M.

Nature. 2013 Nov 21;503(7476):414-7. doi: 10.1038/nature12633. Epub 2013 Sep 25.

PMID:
24067612
39.

Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis.

Karlova R, van Haarst JC, Maliepaard C, van de Geest H, Bovy AG, Lammers M, Angenent GC, de Maagd RA.

J Exp Bot. 2013 Apr;64(7):1863-78. doi: 10.1093/jxb/ert049. Epub 2013 Mar 13.

40.

Proteomics-based identification of low-abundance signaling and regulatory protein complexes in native plant tissues.

Smaczniak C, Li N, Boeren S, America T, van Dongen W, Goerdayal SS, de Vries S, Angenent GC, Kaufmann K.

Nat Protoc. 2012 Dec;7(12):2144-58. doi: 10.1038/nprot.2012.129. Epub 2012 Nov 29.

PMID:
23196971
41.

The tomato FRUITFULL homologs TDR4/FUL1 and MBP7/FUL2 regulate ethylene-independent aspects of fruit ripening.

Bemer M, Karlova R, Ballester AR, Tikunov YM, Bovy AG, Wolters-Arts M, Rossetto Pde B, Angenent GC, de Maagd RA.

Plant Cell. 2012 Nov;24(11):4437-51. doi: 10.1105/tpc.112.103283. Epub 2012 Nov 6.

42.

Developmental and evolutionary diversity of plant MADS-domain factors: insights from recent studies.

Smaczniak C, Immink RG, Angenent GC, Kaufmann K.

Development. 2012 Sep;139(17):3081-98. doi: 10.1242/dev.074674. Review.

43.

Characterization of SOC1's central role in flowering by the identification of its upstream and downstream regulators.

Immink RG, Posé D, Ferrario S, Ott F, Kaufmann K, Valentim FL, de Folter S, van der Wal F, van Dijk AD, Schmid M, Angenent GC.

Plant Physiol. 2012 Sep;160(1):433-49. doi: 10.1104/pp.112.202614. Epub 2012 Jul 12. Erratum in: Plant Physiol. 2013 Aug;162(4):2151.

44.

Arabidopsis class I and class II TCP transcription factors regulate jasmonic acid metabolism and leaf development antagonistically.

Danisman S, van der Wal F, Dhondt S, Waites R, de Folter S, Bimbo A, van Dijk AD, Muino JM, Cutri L, Dornelas MC, Angenent GC, Immink RG.

Plant Physiol. 2012 Aug;159(4):1511-23. doi: 10.1104/pp.112.200303. Epub 2012 Jun 20.

45.

Plant 'evo-devo' goes genomic: from candidate genes to regulatory networks.

de Bruijn S, Angenent GC, Kaufmann K.

Trends Plant Sci. 2012 Aug;17(8):441-7. doi: 10.1016/j.tplants.2012.05.002. Epub 2012 Jun 13.

PMID:
22698378
46.

Integrating two patterning processes in the flower.

van Mourik S, van Dijk AD, Angenent GC, Merk RM, Molenaar J.

Plant Signal Behav. 2012 Jun;7(6):682-4. doi: 10.4161/psb.20017. Epub 2012 May 14.

47.

Simulation of organ patterning on the floral meristem using a polar auxin transport model.

van Mourik S, Kaufmann K, van Dijk AD, Angenent GC, Merks RM, Molenaar J.

PLoS One. 2012;7(1):e28762. doi: 10.1371/journal.pone.0028762. Epub 2012 Jan 23.

48.

Regulation of tomato fruit pericarp development by an interplay between CDKB and CDKA1 cell cycle genes.

Czerednik A, Busscher M, Bielen BA, Wolters-Arts M, de Maagd RA, Angenent GC.

J Exp Bot. 2012 Apr;63(7):2605-17. doi: 10.1093/jxb/err451. Epub 2012 Jan 25.

49.

Characterization of MADS-domain transcription factor complexes in Arabidopsis flower development.

Smaczniak C, Immink RG, Muiño JM, Blanvillain R, Busscher M, Busscher-Lange J, Dinh QD, Liu S, Westphal AH, Boeren S, Parcy F, Xu L, Carles CC, Angenent GC, Kaufmann K.

Proc Natl Acad Sci U S A. 2012 Jan 31;109(5):1560-5. doi: 10.1073/pnas.1112871109. Epub 2012 Jan 11.

50.

Visualizing and characterizing in vivo DNA-binding events and direct target genes of plant transcription factors.

Muiño JM, Angenent GC, Kaufmann K.

Methods Mol Biol. 2011;754:293-305. doi: 10.1007/978-1-61779-154-3_17. Review.

PMID:
21720960

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