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Items: 21

1.

Detection of novel fusion-transcripts by RNA-Seq in T-cell lymphoblastic lymphoma.

López-Nieva P, Fernández-Navarro P, Graña-Castro O, Andrés-León E, Santos J, Villa-Morales M, Cobos-Fernández MÁ, González-Sánchez L, Malumbres M, Salazar-Roa M, Fernández-Piqueras J.

Sci Rep. 2019 Mar 26;9(1):5179. doi: 10.1038/s41598-019-41675-3.

2.

RNA sequencing and Prediction Tools for Circular RNAs Analysis.

López-Jiménez E, Rojas AM, Andrés-León E.

Adv Exp Med Biol. 2018;1087:17-33. doi: 10.1007/978-981-13-1426-1_2. Review.

PMID:
30259354
3.

miARma-Seq, a comprehensive pipeline for the simultaneous study and integration of miRNA and mRNA expression data.

Andrés-León E, Rojas AM.

Methods. 2019 Jan 1;152:31-40. doi: 10.1016/j.ymeth.2018.09.002. Epub 2018 Sep 22. Review.

PMID:
30253202
4.

SP140 regulates the expression of immune-related genes associated with multiple sclerosis and other autoimmune diseases by NF-κB inhibition.

Karaky M, Fedetz M, Potenciano V, Andrés-León E, Codina AE, Barrionuevo C, Alcina A, Matesanz F.

Hum Mol Genet. 2018 Dec 1;27(23):4012-4023. doi: 10.1093/hmg/ddy284.

PMID:
30102396
5.

CD38 promotes pristane-induced chronic inflammation and increases susceptibility to experimental lupus by an apoptosis-driven and TRPM2-dependent mechanism.

García-Rodríguez S, Rosal-Vela A, Botta D, Cumba Garcia LM, Zumaquero E, Prados-Maniviesa V, Cerezo-Wallis D, Lo Buono N, Robles-Guirado JÁ, Guerrero S, González-Paredes E, Andrés-León E, Corbí Á, Mack M, Koch-Nolte F, Merino R, Zubiaur M, Lund FE, Sancho J.

Sci Rep. 2018 Feb 20;8(1):3357. doi: 10.1038/s41598-018-21337-6.

6.

The RNA Polymerase II Factor RPAP1 Is Critical for Mediator-Driven Transcription and Cell Identity.

Lynch CJ, Bernad R, Calvo I, Nóbrega-Pereira S, Ruiz S, Ibarz N, Martinez-Val A, Graña-Castro O, Gómez-López G, Andrés-León E, Espinosa Angarica V, Del Sol A, Ortega S, Fernandez-Capetillo O, Rojo E, Munoz J, Serrano M.

Cell Rep. 2018 Jan 9;22(2):396-410. doi: 10.1016/j.celrep.2017.12.062.

7.

Corrigendum: miARma-Seq: a comprehensive tool for miRNA, mRNA and circRNA analysis.

Andrés-León E, Núñez-Torres R, Rojas AM.

Sci Rep. 2018 Jan 8;8:46928. doi: 10.1038/srep46928.

8.

Prediction of miRNA-mRNA Interactions Using miRGate.

Andrés-León E, Gómez-López G, Pisano DG.

Methods Mol Biol. 2017;1580:225-237. doi: 10.1007/978-1-4939-6866-4_15.

PMID:
28439836
9.

Novel miRNA-mRNA interactions conserved in essential cancer pathways.

Andrés-León E, Cases I, Alonso S, Rojas AM.

Sci Rep. 2017 Apr 7;7:46101. doi: 10.1038/srep46101.

10.

DDRprot: a database of DNA damage response-related proteins.

Andrés-León E, Cases I, Arcas A, Rojas AM.

Database (Oxford). 2016 Aug 29;2016. pii: baw123. doi: 10.1093/database/baw123. Print 2016.

11.

Impact of DLK1-DIO3 imprinted cluster hypomethylation in smoker patients with lung cancer.

Molina-Pinelo S, Salinas A, Moreno-Mata N, Ferrer I, Suarez R, Andrés-León E, Rodríguez-Paredes M, Gutekunst J, Jantus-Lewintre E, Camps C, Carnero A, Paz-Ares L.

Oncotarget. 2016 Jul 15;9(4):4395-4410. doi: 10.18632/oncotarget.10611. eCollection 2018 Jan 12.

12.

miARma-Seq: a comprehensive tool for miRNA, mRNA and circRNA analysis.

Andrés-León E, Núñez-Torres R, Rojas AM.

Sci Rep. 2016 May 11;6:25749. doi: 10.1038/srep25749. Erratum in: Sci Rep. 2018 Jan 08;8:46928.

13.

MicroRNA deregulation in triple negative breast cancer reveals a role of miR-498 in regulating BRCA1 expression.

Matamala N, Vargas MT, González-Cámpora R, Arias JI, Menéndez P, Andrés-León E, Yanowsky K, Llaneza-Folgueras A, Miñambres R, Martínez-Delgado B, Benítez J.

Oncotarget. 2016 Apr 12;7(15):20068-79. doi: 10.18632/oncotarget.7705.

14.

The cellular growth rate controls overall mRNA turnover, and modulates either transcription or degradation rates of particular gene regulons.

García-Martínez J, Delgado-Ramos L, Ayala G, Pelechano V, Medina DA, Carrasco F, González R, Andrés-León E, Steinmetz L, Warringer J, Chávez S, Pérez-Ortín JE.

Nucleic Acids Res. 2016 May 5;44(8):3643-58. doi: 10.1093/nar/gkv1512. Epub 2015 Dec 29.

15.

Prp40 and early events in splice site definition.

Becerra S, Andrés-León E, Prieto-Sánchez S, Hernández-Munain C, Suñé C.

Wiley Interdiscip Rev RNA. 2016 Jan-Feb;7(1):17-32. doi: 10.1002/wrna.1312. Epub 2015 Oct 23. Review.

PMID:
26494226
16.

Tumor microRNA expression profiling identifies circulating microRNAs for early breast cancer detection.

Matamala N, Vargas MT, González-Cámpora R, Miñambres R, Arias JI, Menéndez P, Andrés-León E, Gómez-López G, Yanowsky K, Calvete-Candenas J, Inglada-Pérez L, Martínez-Delgado B, Benítez J.

Clin Chem. 2015 Aug;61(8):1098-106. doi: 10.1373/clinchem.2015.238691. Epub 2015 Jun 8.

17.

miRGate: a curated database of human, mouse and rat miRNA-mRNA targets.

Andrés-León E, González Peña D, Gómez-López G, Pisano DG.

Database (Oxford). 2015 Apr 8;2015:bav035. doi: 10.1093/database/bav035. Print 2015.

18.

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data.

Frenkel-Morgenstern M, Gorohovski A, Lacroix V, Rogers M, Ibanez K, Boullosa C, Andres Leon E, Ben-Hur A, Valencia A.

Nucleic Acids Res. 2013 Jan;41(Database issue):D142-51. doi: 10.1093/nar/gks1041. Epub 2012 Nov 9.

19.

Inference of functional relations in predicted protein networks with a machine learning approach.

García-Jiménez B, Juan D, Ezkurdia I, Andrés-León E, Valencia A.

PLoS One. 2010 Apr 1;5(4):e9969. doi: 10.1371/journal.pone.0009969.

20.

EcID. A database for the inference of functional interactions in E. coli.

Andres Leon E, Ezkurdia I, García B, Valencia A, Juan D.

Nucleic Acids Res. 2009 Jan;37(Database issue):D629-35. doi: 10.1093/nar/gkn853. Epub 2008 Nov 12.

21.

Intelligent client for integrating bioinformatics services.

Navas-Delgado I, Rojano-Muñoz Mdel M, Ramírez S, Pérez AJ, Andrés León E, Aldana-Montes JF, Trelles O.

Bioinformatics. 2006 Jan 1;22(1):106-11. Epub 2005 Oct 27.

PMID:
16257987

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