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The rates and players of denitrification, dissimilatory nitrate reduction to ammonia (DNRA) and anaerobic ammonia oxidation (anammox) in mangrove soils.

Luvizotto DM, Araujo JE, Silva MCP, Dias ACF, Kraft B, Tegetmeye H, Strous M, Andreote FD.

An Acad Bras Cienc. 2018 Oct 25:0. doi: 10.1590/0001-3765201820180373. [Epub ahead of print]


Evolution of the U.S. Biological Select Agent Rathayibacter toxicus.

Davis EW 2nd, Tabima JF, Weisberg AJ, Lopes LD, Wiseman MS, Wiseman MS, Pupko T, Belcher MS, Sechler AJ, Tancos MA, Schroeder BK, Murray TD, Luster DG, Schneider WL, Rogers EE, Andreote FD, Grünwald NJ, Putnam ML, Chang JH.

MBio. 2018 Aug 28;9(4). pii: e01280-18. doi: 10.1128/mBio.01280-18.


BTW-Bioinformatics Through Windows: an easy-to-install package to analyze marker gene data.

Morais D, Roesch LFW, Redmile-Gordon M, Santos FG, Baldrian P, Andreote FD, Pylro VS.

PeerJ. 2018 Jul 30;6:e5299. doi: 10.7717/peerj.5299. eCollection 2018.


Genome variations between rhizosphere and bulk soil ecotypes of a Pseudomonas koreensis population.

Lopes LD, Pereira E Silva MC, Weisberg AJ, Davis EW 2nd, Yan Q, Varize CS, Wu CF, Chang JH, Loper JE, Andreote FD.

Environ Microbiol. 2018 Jul 22. doi: 10.1111/1462-2920.14363. [Epub ahead of print]


Sewage Sludge Microbial Structures and Relations to Their Sources, Treatments, and Chemical Attributes.

Nascimento AL, Souza AJ, Andrade PAM, Andreote FD, Coscione AR, Oliveira FC, Regitano JB.

Front Microbiol. 2018 Jul 3;9:1462. doi: 10.3389/fmicb.2018.01462. eCollection 2018.


Microbial functional responses to long-term anthropogenic impact in mangrove soils.

Cabral L, Pereira de Sousa ST, Júnior GVL, Hawley E, Andreote FD, Hess M, de Oliveira VM.

Ecotoxicol Environ Saf. 2018 Sep 30;160:231-239. doi: 10.1016/j.ecoenv.2018.04.050. Epub 2018 May 26.


How to live and do science in a changing world.

Andreote FD.

An Acad Bras Cienc. 2018 Jan-Mar;90(1):1-2. doi: 10.1590/0001-37652017901. No abstract available.


Closed Genome Sequence of Phytopathogen Biocontrol Agent Bacillus velezensis Strain AGVL-005, Isolated from Soybean.

Pylro VS, Dias ACF, Andreote FD, Morais DK, Varani AM, Andreote CCF, Bernardo ERA, Zucchi T.

Genome Announc. 2018 Feb 15;6(7). pii: e00057-18. doi: 10.1128/genomeA.00057-18.


Transitions to sustainable management of phosphorus in Brazilian agriculture.

Withers PJA, Rodrigues M, Soltangheisi A, de Carvalho TS, Guilherme LRG, Benites VM, Gatiboni LC, de Sousa DMG, Nunes RS, Rosolem CA, Andreote FD, Oliveira A Jr, Coutinho ELM, Pavinato PS.

Sci Rep. 2018 Feb 7;8(1):2537. doi: 10.1038/s41598-018-20887-z.


Secondary Metabolism and Interspecific Competition Affect Accumulation of Spontaneous Mutants in the GacS-GacA Regulatory System in Pseudomonas protegens.

Yan Q, Lopes LD, Shaffer BT, Kidarsa TA, Vining O, Philmus B, Song C, Stockwell VO, Raaijmakers JM, McPhail KL, Andreote FD, Chang JH, Loper JE.

MBio. 2018 Jan 16;9(1). pii: e01845-17. doi: 10.1128/mBio.01845-17.


The depleted mineralization of the fungicide chlorothalonil derived from loss in soil microbial diversity.

de Souza AJ, de Andrade PAM, de Araújo Pereira AP, Andreote FD, Tornisielo VL, Regitano JB.

Sci Rep. 2017 Nov 7;7(1):14646. doi: 10.1038/s41598-017-14803-0.


Tropical soils are a reservoir for fluorescent Pseudomonas spp. biodiversity.

Lopes LD, Davis EW 2nd, Pereira E Silva MC, Weisberg AJ, Bresciani L, Chang JH, Loper JE, Andreote FD.

Environ Microbiol. 2018 Jan;20(1):62-74. doi: 10.1111/1462-2920.13957. Epub 2017 Nov 10.


A Novel Multifunctional β-N-Acetylhexosaminidase Revealed through Metagenomics of an Oil-Spilled Mangrove.

Soares FL, Marcon J, Pereira E Silva MC, Khakhum N, Cerdeira LT, Ottoni JR, Domingos DF, Taketani RG, de Oliveira VM, Lima AOS, Azevedo JL, Rodrigues JLM, Andreote FD.

Bioengineering (Basel). 2017 Jul 9;4(3). pii: E62. doi: 10.3390/bioengineering4030062.


Molecular Diagnostic for Prospecting Polyhydroxyalkanoate-Producing Bacteria.

Montenegro EMDS, Delabary GS, Silva MACD, Andreote FD, Lima AOS.

Bioengineering (Basel). 2017 May 25;4(2). pii: E52. doi: 10.3390/bioengineering4020052.


The parA Region of Broad-Host-Range PromA Plasmids Is a Carrier of Mobile Genes.

Dias ACF, Cotta SR, Andreote FD, van Elsas JD.

Microb Ecol. 2018 Feb;75(2):479-486. doi: 10.1007/s00248-017-1059-y. Epub 2017 Sep 5.


Temporal assessment of microbial communities in soils of two contrasting mangroves.

Rigonato J, Kent AD, Gumiere T, Branco LHZ, Andreote FD, Fiore MF.

Braz J Microbiol. 2018 Jan - Mar;49(1):87-96. doi: 10.1016/j.bjm.2017.04.008. Epub 2017 Aug 1.


Shifts in the bacterial community composition along deep soil profiles in monospecific and mixed stands of Eucalyptus grandis and Acacia mangium.

Pereira APA, Andrade PAM, Bini D, Durrer A, Robin A, Bouillet JP, Andreote FD, Cardoso EJBN.

PLoS One. 2017 Jul 7;12(7):e0180371. doi: 10.1371/journal.pone.0180371. eCollection 2017.


Functional metagenomics of oil-impacted mangrove sediments reveals high abundance of hydrolases of biotechnological interest.

Ottoni JR, Cabral L, de Sousa STP, Júnior GVL, Domingos DF, Soares Junior FL, da Silva MCP, Marcon J, Dias ACF, de Melo IS, de Souza AP, Andreote FD, de Oliveira VM.

World J Microbiol Biotechnol. 2017 Jul;33(7):141. doi: 10.1007/s11274-017-2307-5. Epub 2017 Jun 7.


Changes in bacterial community after application of three different herbicides.

Moretto JAS, Altarugio LM, Andrade PA, Fachin AL, Andreote FD, Stehling EG.

FEMS Microbiol Lett. 2017 Jul 6;364(13). doi: 10.1093/femsle/fnx113.


Microbial communities associated with plants: learning from nature to apply it in agriculture.

Andreote FD, Pereira E Silva MC.

Curr Opin Microbiol. 2017 Jun;37:29-34. doi: 10.1016/j.mib.2017.03.011. Epub 2017 Apr 22. Review.


Bacterial communities involved in sulfur transformations in wastewater treatment plants.

Meyer DD, de Andrade PA, Durrer A, Andreote FD, Corção G, Brandelli A.

Appl Microbiol Biotechnol. 2016 Dec;100(23):10125-10135. Epub 2016 Sep 28.


Bacterial Abilities and Adaptation Toward the Rhizosphere Colonization.

Lopes LD, Pereira E Silva Mde C, Andreote FD.

Front Microbiol. 2016 Aug 25;7:1341. doi: 10.3389/fmicb.2016.01341. eCollection 2016.


Dry Season Constrains Bacterial Phylogenetic Diversity in a Semi-Arid Rhizosphere System.

Taketani RG, Lançoni MD, Kavamura VN, Durrer A, Andreote FD, Melo IS.

Microb Ecol. 2017 Jan;73(1):153-161. doi: 10.1007/s00248-016-0835-4. Epub 2016 Aug 24.


A Step Forward to Empower Global Microbiome Research Through Local Leadership.

Pylro VS, Mui TS, Rodrigues JLM, Andreote FD, Roesch LFW; Working Group Supporting the INCT Microbiome.

Trends Microbiol. 2016 Oct;24(10):767-771. doi: 10.1016/j.tim.2016.07.007. Epub 2016 Aug 5. No abstract available.


Bacterial selection by mycospheres of Atlantic Rainforest mushrooms.

Halsey JA, de Cássia Pereira E Silva M, Andreote FD.

Antonie Van Leeuwenhoek. 2016 Oct;109(10):1353-65. doi: 10.1007/s10482-016-0734-1. Epub 2016 Jul 13.


Anthropogenic impact on mangrove sediments triggers differential responses in the heavy metals and antibiotic resistomes of microbial communities.

Cabral L, Júnior GVL, Pereira de Sousa ST, Dias ACF, Lira Cadete L, Andreote FD, Hess M, de Oliveira VM.

Environ Pollut. 2016 Sep;216:460-469. doi: 10.1016/j.envpol.2016.05.078. Epub 2016 Jun 11.


Linking the Composition of Bacterial and Archaeal Communities to Characteristics of Soil and Flora Composition in the Atlantic Rainforest.

Lima-Perim JE, Romagnoli EM, Dini-Andreote F, Durrer A, Dias AC, Andreote FD.

PLoS One. 2016 Jan 11;11(1):e0146566. doi: 10.1371/journal.pone.0146566. eCollection 2016.


The diversity and abundance of phytase genes (β-propeller phytases) in bacterial communities of the maize rhizosphere.

Cotta SR, Cavalcante Franco Dias A, Seldin L, Andreote FD, van Elsas JD.

Lett Appl Microbiol. 2016 Mar;62(3):264-8. doi: 10.1111/lam.12535.


Endophytic bacterial communities associated with two explant sources of Eucalyptus benthamii Maiden & Cambage.

Esposito-Polesi NP, de Andrade PA, de Almeida CV, Andreote FD, de Almeida M.

World J Microbiol Biotechnol. 2015 Nov;31(11):1737-46. doi: 10.1007/s11274-015-1924-0. Epub 2015 Sep 16.


Genes related to antioxidant metabolism are involved in Methylobacterium mesophilicum-soybean interaction.

Araújo WL, Santos DS, Dini-Andreote F, Salgueiro-Londoño JK, Camargo-Neves AA, Andreote FD, Dourado MN.

Antonie Van Leeuwenhoek. 2015 Oct;108(4):951-63. doi: 10.1007/s10482-015-0548-6. Epub 2015 Aug 4.


Differential expression of the pr1A gene in Metarhizium anisopliae and Metarhizium acridum across different culture conditions and during pathogenesis.

Leão MP, Tiago PV, Andreote FD, de Araújo WL, de Oliveira NT.

Genet Mol Biol. 2015 Mar;38(1):86-92. doi: 10.1590/S1415-475738138120140236. Epub 2014 Mar 17.


Bacterial communities in the rhizosphere of Vitis vinifera L. cultivated under distinct agricultural practices in Argentina.

Vega-Avila AD, Gumiere T, Andrade PA, Lima-Perim JE, Durrer A, Baigori M, Vazquez F, Andreote FD.

Antonie Van Leeuwenhoek. 2015 Feb;107(2):575-88. doi: 10.1007/s10482-014-0353-7. Epub 2014 Dec 20.


Compositional profile of α / β-hydrolase fold proteins in mangrove soil metagenomes: prevalence of epoxide hydrolases and haloalkane dehalogenases in oil-contaminated sites.

Jiménez DJ, Dini-Andreote F, Ottoni JR, de Oliveira VM, van Elsas JD, Andreote FD.

Microb Biotechnol. 2015 May;8(3):604-13. doi: 10.1111/1751-7915.12157. Epub 2014 Aug 29.


Bacterial community characterization in the soils of native and restored rainforest fragments.

Vasconcellos RL, Zucchi TD, Taketani RG, Andreote FD, Cardoso EJ.

Antonie Van Leeuwenhoek. 2014 Nov;106(5):947-57. doi: 10.1007/s10482-014-0264-7. Epub 2014 Aug 26.


Different effects of transgenic maize and nontransgenic maize on nitrogen-transforming archaea and bacteria in tropical soils.

Cotta SR, Dias AC, Marriel IE, Andreote FD, Seldin L, van Elsas JD.

Appl Environ Microbiol. 2014 Oct;80(20):6437-45. doi: 10.1128/AEM.01778-14. Epub 2014 Aug 8.


Screening of endoglucanase-producing bacteria in the saline rhizosphere of Rhizophora mangle.

Sá AL, Dias AC, Quecine MC, Cotta SR, Fasanella CC, Andreote FD, de Melo IS.

Braz J Microbiol. 2014 May 19;45(1):193-7. eCollection 2014.


Methylobacterium-plant interaction genes regulated by plant exudate and quorum sensing molecules.

Dourado MN, Bogas AC, Pomini AM, Andreote FD, Quecine MC, Marsaioli AJ, Araújo WL.

Braz J Microbiol. 2014 Mar 10;44(4):1331-9. eCollection 2013 Dec.


Endo- and exoglucanase activities in bacteria from mangrove sediment.

Soares Júnior FL, Dias AC, Fasanella CC, Taketani RG, de Souza Lima AO, Melo IS, Andreote FD.

Braz J Microbiol. 2014 Jan 15;44(3):969-76. eCollection 2013.


Draft Genome Sequence of Bacillus thuringiensis Strain BrMgv02-JM63, a Chitinolytic Bacterium Isolated from Oil-Contaminated Mangrove Soil in Brazil.

Marcon J, Taketani RG, Dini-Andreote F, Mazzero GI, Soares FL Junior, Melo IS, Azevedo JL, Andreote FD.

Genome Announc. 2014 Jan 30;2(1). pii: e01264-13. doi: 10.1128/genomeA.01264-13.


Brazilian Microbiome Project: revealing the unexplored microbial diversity--challenges and prospects.

Pylro VS, Roesch LF, Ortega JM, do Amaral AM, Tótola MR, Hirsch PR, Rosado AS, Góes-Neto A, da Costa da Silva AL, Rosa CA, Morais DK, Andreote FD, Duarte GF, de Melo IS, Seldin L, Lambais MR, Hungria M, Peixoto RS, Kruger RH, Tsai SM, Azevedo V; Brazilian Microbiome Project Organization Committee.

Microb Ecol. 2014 Feb;67(2):237-41. doi: 10.1007/s00248-013-0302-4. Epub 2013 Oct 31.


Water regime influences bulk soil and Rhizosphere of Cereus jamacaru bacterial communities in the Brazilian Caatinga biome.

Nessner Kavamura V, Taketani RG, Lançoni MD, Andreote FD, Mendes R, Soares de Melo I.

PLoS One. 2013 Sep 17;8(9):e73606. doi: 10.1371/journal.pone.0073606. eCollection 2013.


Sulphur-oxidizing and sulphate-reducing communities in Brazilian mangrove sediments.

Varon-Lopez M, Dias AC, Fasanella CC, Durrer A, Melo IS, Kuramae EE, Andreote FD.

Environ Microbiol. 2014 Mar;16(3):845-55. doi: 10.1111/1462-2920.12237. Epub 2013 Aug 27.


Different selective effects on rhizosphere bacteria exerted by genetically modified versus conventional potato lines.

Dias AC, Dini-Andreote F, Hannula SE, Andreote FD, Pereira E Silva Mde C, Salles JF, de Boer W, van Veen J, van Elsas JD.

PLoS One. 2013 Jul 3;8(7):e67948. doi: 10.1371/journal.pone.0067948. Print 2013.


Draft Genome Sequence of Methylobacterium mesophilicum Strain SR1.6/6, Isolated from Citrus sinensis.

Marinho Almeida D, Dini-Andreote F, Camargo Neves AA, Jucá Ramos RT, Andreote FD, Carneiro AR, Oliveira de Souza Lima A, Caracciolo Gomes de Sá PH, Ribeiro Barbosa MS, Araújo WL, Silva A.

Genome Announc. 2013 Jun 20;1(3). pii: e00356-13. doi: 10.1128/genomeA.00356-13.


Draft Genome Sequence of Bacillus stratosphericus LAMA 585, Isolated from the Atlantic Deep Sea.

Lima AO, Cabral A, Andreote FD, Cavalett A, Pessatti ML, Dini-Andreote F, da Silva MA.

Genome Announc. 2013 May 2;1(3). pii: e00204-13. doi: 10.1128/genomeA.00204-13.


Screening of Brazilian cacti rhizobacteria for plant growth promotion under drought.

Kavamura VN, Santos SN, Silva JL, Parma MM, Avila LA, Visconti A, Zucchi TD, Taketani RG, Andreote FD, Melo IS.

Microbiol Res. 2013 May 6;168(4):183-91. doi: 10.1016/j.micres.2012.12.002. Epub 2012 Dec 29.


Structural and functional insights from the metagenome of an acidic hot spring microbial planktonic community in the Colombian Andes.

Jiménez DJ, Andreote FD, Chaves D, Montaña JS, Osorio-Forero C, Junca H, Zambrano MM, Baena S.

PLoS One. 2012;7(12):e52069. doi: 10.1371/journal.pone.0052069. Epub 2012 Dec 14.


Plant growth promoting bacteria in Brachiaria brizantha.

Silva MC, Figueiredo AF, Andreote FD, Cardoso EJ.

World J Microbiol Biotechnol. 2013 Jan;29(1):163-71. doi: 10.1007/s11274-012-1169-0. Epub 2012 Sep 18.


Abundance and genetic diversity of nifH gene sequences in anthropogenically affected Brazilian mangrove sediments.

Dias AC, Pereira e Silva Mde C, Cotta SR, Dini-Andreote F, Soares FL Jr, Salles JF, Azevedo JL, van Elsas JD, Andreote FD.

Appl Environ Microbiol. 2012 Nov;78(22):7960-7. doi: 10.1128/AEM.02273-12. Epub 2012 Aug 31.


Drivers of cyanobacterial diversity and community composition in mangrove soils in south-east Brazil.

Rigonato J, Kent AD, Alvarenga DO, Andreote FD, Beirigo RM, Vidal-Torrado P, Fiore MF.

Environ Microbiol. 2013 Apr;15(4):1103-14. doi: 10.1111/j.1462-2920.2012.02830.x. Epub 2012 Jul 23.


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