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Quantitative Proteomic Analysis Reveals Caffeine-Perturbed Proteomic Profiles in Normal Bladder Epithelial Cells.

Shahid M, Kim M, Yeon A, Andres AM, You S, Kim J.

Proteomics. 2018 Oct;18(20):e1800190. doi: 10.1002/pmic.201800190. Epub 2018 Oct 11.


Rejoinder to Mr. Peter J. Laud.

Hernández MÁ, Andrés AM, Tejedor IH.

J Biopharm Stat. 2018;28(5):1021-1023. doi: 10.1080/10543406.2018.1489412. Epub 2018 Jul 9. No abstract available.


Myogenic Progenitor Cell Differentiation Is Dependent on Modulation of Mitochondrial Biogenesis through Autophagy.

Hiraumi Y, Huang C, Andres AM, Xiong Y, Ramil J, Gottlieb RA.

In: Nakanishi T, Markwald RR, Baldwin HS, Keller BB, Srivastava D, Yamagishi H, editors. Etiology and Morphogenesis of Congenital Heart Disease: From Gene Function and Cellular Interaction to Morphology [Internet]. Tokyo: Springer; 2016. Chapter 15.
2016 Jun 25.


Human local adaptation of the TRPM8 cold receptor along a latitudinal cline.

Key FM, Abdul-Aziz MA, Mundry R, Peter BM, Sekar A, D'Amato M, Dennis MY, Schmidt JM, Andrés AM.

PLoS Genet. 2018 May 3;14(5):e1007298. doi: 10.1371/journal.pgen.1007298. eCollection 2018 May.


Super-Obese Patient-Derived iPSC Hypothalamic Neurons Exhibit Obesogenic Signatures and Hormone Responses.

Rajamani U, Gross AR, Hjelm BE, Sequeira A, Vawter MP, Tang J, Gangalapudi V, Wang Y, Andres AM, Gottlieb RA, Sareen D.

Cell Stem Cell. 2018 May 3;22(5):698-712.e9. doi: 10.1016/j.stem.2018.03.009. Epub 2018 Apr 19.


Signatures of Long-Term Balancing Selection in Human Genomes.

Bitarello BD, de Filippo C, Teixeira JC, Schmidt JM, Kleinert P, Meyer D, Andrés AM.

Genome Biol Evol. 2018 Mar 1;10(3):939-955. doi: 10.1093/gbe/evy054.


One-tailed asymptotic inferences for the difference of proportions: Analysis of 97 methods of inference.

Hernández MÁ, Andrés AM, Tejedor IH.

J Biopharm Stat. 2018;28(6):1090-1104. doi: 10.1080/10543406.2018.1452028. Epub 2018 Apr 2.


Exosome-Mediated Benefits of Cell Therapy in Mouse and Human Models of Duchenne Muscular Dystrophy.

Aminzadeh MA, Rogers RG, Fournier M, Tobin RE, Guan X, Childers MK, Andres AM, Taylor DJ, Ibrahim A, Ding X, Torrente A, Goldhaber JM, Lewis M, Gottlieb RA, Victor RA, Marbán E.

Stem Cell Reports. 2018 Mar 13;10(3):942-955. doi: 10.1016/j.stemcr.2018.01.023. Epub 2018 Mar 1.


Long-term results of surgery for bowel lengthening: how many transplants are avoided, for which patients?

Hernandez F, Andres AM, Lopez-Santamaria M.

Curr Opin Organ Transplant. 2018 Apr;23(2):207-211. doi: 10.1097/MOT.0000000000000508.


A high-coverage Neandertal genome from Vindija Cave in Croatia.

Prüfer K, de Filippo C, Grote S, Mafessoni F, Korlević P, Hajdinjak M, Vernot B, Skov L, Hsieh P, Peyrégne S, Reher D, Hopfe C, Nagel S, Maricic T, Fu Q, Theunert C, Rogers R, Skoglund P, Chintalapati M, Dannemann M, Nelson BJ, Key FM, Rudan P, Kućan Ž, Gušić I, Golovanova LV, Doronichev VB, Patterson N, Reich D, Eichler EE, Slatkin M, Schierup MH, Andrés AM, Kelso J, Meyer M, Pääbo S.

Science. 2017 Nov 3;358(6363):655-658. doi: 10.1126/science.aao1887. Epub 2017 Oct 5.


Endocrine disruptors induce perturbations in endoplasmic reticulum and mitochondria of human pluripotent stem cell derivatives.

Rajamani U, Gross AR, Ocampo C, Andres AM, Gottlieb RA, Sareen D.

Nat Commun. 2017 Aug 9;8(1):219. doi: 10.1038/s41467-017-00254-8.


Mitochondrial function in engineered cardiac tissues is regulated by extracellular matrix elasticity and tissue alignment.

Lyra-Leite DM, Andres AM, Petersen AP, Ariyasinghe NR, Cho N, Lee JA, Gottlieb RA, McCain ML.

Am J Physiol Heart Circ Physiol. 2017 Oct 1;313(4):H757-H767. doi: 10.1152/ajpheart.00290.2017. Epub 2017 Jul 21.


Exercise reestablishes autophagic flux and mitochondrial quality control in heart failure.

Campos JC, Queliconi BB, Bozi LHM, Bechara LRG, Dourado PMM, Andres AM, Jannig PR, Gomes KMS, Zambelli VO, Rocha-Resende C, Guatimosim S, Brum PC, Mochly-Rosen D, Gottlieb RA, Kowaltowski AJ, Ferreira JCB.

Autophagy. 2017 Aug 3;13(8):1304-1317. doi: 10.1080/15548627.2017.1325062.


Mitophagy and mitochondrial biogenesis in atrial tissue of patients undergoing heart surgery with cardiopulmonary bypass.

Andres AM, Tucker KC, Thomas A, Taylor DJ, Sengstock D, Jahania SM, Dabir R, Pourpirali S, Brown JA, Westbrook DG, Ballinger SW, Mentzer RM Jr, Gottlieb RA.

JCI Insight. 2017 Feb 23;2(4):e89303. doi: 10.1172/jci.insight.89303.


Natural Selection in the Great Apes.

Cagan A, Theunert C, Laayouni H, Santpere G, Pybus M, Casals F, Prüfer K, Navarro A, Marques-Bonet T, Bertranpetit J, Andrés AM.

Mol Biol Evol. 2016 Dec;33(12):3268-3283. Epub 2016 Oct 30.


Chimpanzee genomic diversity reveals ancient admixture with bonobos.

de Manuel M, Kuhlwilm M, Frandsen P, Sousa VC, Desai T, Prado-Martinez J, Hernandez-Rodriguez J, Dupanloup I, Lao O, Hallast P, Schmidt JM, Heredia-Genestar JM, Benazzo A, Barbujani G, Peter BM, Kuderna LF, Casals F, Angedakin S, Arandjelovic M, Boesch C, Kühl H, Vigilant L, Langergraber K, Novembre J, Gut M, Gut I, Navarro A, Carlsen F, Andrés AM, Siegismund HR, Scally A, Excoffier L, Tyler-Smith C, Castellano S, Xue Y, Hvilsom C, Marques-Bonet T.

Science. 2016 Oct 28;354(6311):477-481. Epub 2016 Oct 27.


Demographic History of the Genus Pan Inferred from Whole Mitochondrial Genome Reconstructions.

Lobon I, Tucci S, de Manuel M, Ghirotto S, Benazzo A, Prado-Martinez J, Lorente-Galdos B, Nam K, Dabad M, Hernandez-Rodriguez J, Comas D, Navarro A, Schierup MH, Andres AM, Barbujani G, Hvilsom C, Marques-Bonet T.

Genome Biol Evol. 2016 Jul 3;8(6):2020-30. doi: 10.1093/gbe/evw124.


Discordant signaling and autophagy response to fasting in hearts of obese mice: Implications for ischemia tolerance.

Andres AM, Kooren JA, Parker SJ, Tucker KC, Ravindran N, Ito BR, Huang C, Venkatraman V, Van Eyk JE, Gottlieb RA, Mentzer RM Jr.

Am J Physiol Heart Circ Physiol. 2016 Jul 1;311(1):H219-28. doi: 10.1152/ajpheart.00041.2016. Epub 2016 May 6.


Difficulties, guidelines and review of developing an acute rejection model after rat intestinal transplantation.

Andres AM, Santamaria M, Hernandez-Oliveros F, Guerra L, Lopez S, Stringa P, Vallejo MT, Largo C, Encinas JL, Garcia de Las Heras MS, Lopez-Santamaria M, Tovar JA.

Transpl Immunol. 2016 May;36:32-41. doi: 10.1016/j.trim.2016.04.003. Epub 2016 Apr 19.


Human adaptation and population differentiation in the light of ancient genomes.

Key FM, Fu Q, Romagné F, Lachmann M, Andrés AM.

Nat Commun. 2016 Mar 18;7:10775. doi: 10.1038/ncomms10775.


Ancient gene flow from early modern humans into Eastern Neanderthals.

Kuhlwilm M, Gronau I, Hubisz MJ, de Filippo C, Prado-Martinez J, Kircher M, Fu Q, Burbano HA, Lalueza-Fox C, de la Rasilla M, Rosas A, Rudan P, Brajkovic D, Kucan Ž, Gušic I, Marques-Bonet T, Andrés AM, Viola B, Pääbo S, Meyer M, Siepel A, Castellano S.

Nature. 2016 Feb 25;530(7591):429-33. doi: 10.1038/nature16544. Epub 2016 Feb 17.


Recent Selection Changes in Human Genes under Long-Term Balancing Selection.

de Filippo C, Key FM, Ghirotto S, Benazzo A, Meneu JR, Weihmann A; NISC Comparative Sequence Program, Parra G, Green ED, Andrés AM.

Mol Biol Evol. 2016 Jun;33(6):1435-47. doi: 10.1093/molbev/msw023. Epub 2016 Feb 1.


Introgression of Neandertal- and Denisovan-like Haplotypes Contributes to Adaptive Variation in Human Toll-like Receptors.

Dannemann M, Andrés AM, Kelso J.

Am J Hum Genet. 2016 Jan 7;98(1):22-33. doi: 10.1016/j.ajhg.2015.11.015. Erratum in: Am J Hum Genet. 2016 Feb 4;98(2):399.


Mitophagy is required for mitochondrial biogenesis and myogenic differentiation of C2C12 myoblasts.

Sin J, Andres AM, Taylor DJ, Weston T, Hiraumi Y, Stotland A, Kim BJ, Huang C, Doran KS, Gottlieb RA.

Autophagy. 2016;12(2):369-80. doi: 10.1080/15548627.2015.1115172.


Surgical Rehabilitation Techniques in Children with Poor Prognosis Short Bowel Syndrome.

Dore M, Junco PT, Andres AM, Sánchez-Galán A, Amesty MV, Ramos E, Prieto G, Hernandez F, Lopez Santamaria M.

Eur J Pediatr Surg. 2016 Feb;26(1):112-6. doi: 10.1055/s-0035-1567805. Epub 2015 Nov 4.


Congenital Portosystemic Shunts: Clinic Heterogeneity Requires an Individual Management of the Patient.

Chocarro G, Amesty MV, Encinas JL, Vilanova Sánchez A, Hernandez F, Andres AM, Gamez M, Tovar JA, Lopez Santamaria M.

Eur J Pediatr Surg. 2016 Feb;26(1):74-80. doi: 10.1055/s-0035-1566097. Epub 2015 Nov 3.


Genetic adaptation to levels of dietary selenium in recent human history.

White L, Romagné F, Müller E, Erlebach E, Weihmann A, Parra G, Andrés AM, Castellano S.

Mol Biol Evol. 2015 Jun;32(6):1507-18. doi: 10.1093/molbev/msv043. Epub 2015 Mar 3.


Untangling autophagy measurements: all fluxed up.

Gottlieb RA, Andres AM, Sin J, Taylor DP.

Circ Res. 2015 Jan 30;116(3):504-14. doi: 10.1161/CIRCRESAHA.116.303787. Review.


Long-Term Balancing Selection in LAD1 Maintains a Missense Trans-Species Polymorphism in Humans, Chimpanzees, and Bonobos.

Teixeira JC, de Filippo C, Weihmann A, Meneu JR, Racimo F, Dannemann M, Nickel B, Fischer A, Halbwax M, Andre C, Atencia R, Meyer M, Parra G, Pääbo S, Andrés AM.

Mol Biol Evol. 2015 May;32(5):1186-96. doi: 10.1093/molbev/msv007. Epub 2015 Jan 19.


Editorial overview: genetics of human evolution: the genetics of human origins.

Andrés AM, Nowick K.

Curr Opin Genet Dev. 2014 Dec;29:v-vii. No abstract available.


A time to reap, a time to sow: mitophagy and biogenesis in cardiac pathophysiology.

Andres AM, Stotland A, Queliconi BB, Gottlieb RA.

J Mol Cell Cardiol. 2015 Jan;78:62-72. doi: 10.1016/j.yjmcc.2014.10.003. Epub 2014 Oct 16. Review.


Ulcerative ileitis after proctocolectomy in children: a complication of ulcerative colitis or a disease in itself after ileoanal pullthrough?

Sánchez-Galán A, Andres AM, Fernández-Caamaño B, Vilanova A, Dominguez E, Ortiz R, Prieto G, Lopez-Santamaria M, Tovar JA.

Eur J Pediatr Surg. 2015 Feb;25(1):e1. doi: 10.1055/s-0034-1394279. Epub 2014 Oct 26. No abstract available.


Selection on a variant associated with improved viral clearance drives local, adaptive pseudogenization of interferon lambda 4 (IFNL4).

Key FM, Peter B, Dennis MY, Huerta-Sánchez E, Tang W, Prokunina-Olsson L, Nielsen R, Andrés AM.

PLoS Genet. 2014 Oct 16;10(10):e1004681. doi: 10.1371/journal.pgen.1004681. eCollection 2014 Oct. Erratum in: PLoS Genet. 2014 Nov;10(11):e1004882.


Measuring cardiac autophagic flux in vitro and in vivo.

Gurney MA, Huang C, Ramil JM, Ravindran N, Andres AM, Sin J, Linton PJ, Gottlieb RA.

Methods Mol Biol. 2015;1219:187-97. doi: 10.1007/978-1-4939-1661-0_14.


Health-related quality of life in pediatric intestinal transplantation.

Andres AM, Alameda A, Mayoral O, Hernandez F, Dominguez E, Martinez Ojinaga E, Ramos E, Prieto G, Lopez Santamaría M, Tovar JA.

Pediatr Transplant. 2014 Nov;18(7):746-56. doi: 10.1111/petr.12348. Epub 2014 Sep 2.


Advantageous diversity maintained by balancing selection in humans.

Key FM, Teixeira JC, de Filippo C, Andrés AM.

Curr Opin Genet Dev. 2014 Dec;29:45-51. doi: 10.1016/j.gde.2014.08.001. Epub 2014 Aug 29. Review.


Ulcerative ileitis after proctocolectomy in children: a complication of ulcerative colitis or a disease in itself after ileoanal pullthrough?

Sánchez-Galán A, Andres AM, Fernández-Caamaño B, Vilanova A, Dominguez E, Ortiz R, Prieto G, Lopez-Santamaria M, Tovar JA.

Eur J Pediatr Surg. 2015 Feb;25(1):51-5. doi: 10.1055/s-0034-1386643. Epub 2014 Aug 21. Erratum in: Eur J Pediatr Surg. 2015 Feb;25(1):e1.


Patterns of coding variation in the complete exomes of three Neandertals.

Castellano S, Parra G, Sánchez-Quinto FA, Racimo F, Kuhlwilm M, Kircher M, Sawyer S, Fu Q, Heinze A, Nickel B, Dabney J, Siebauer M, White L, Burbano HA, Renaud G, Stenzel U, Lalueza-Fox C, de la Rasilla M, Rosas A, Rudan P, Brajković D, Kucan Ž, Gušic I, Shunkov MV, Derevianko AP, Viola B, Meyer M, Kelso J, Andrés AM, Pääbo S.

Proc Natl Acad Sci U S A. 2014 May 6;111(18):6666-71. doi: 10.1073/pnas.1405138111. Epub 2014 Apr 21.


Sequence diversity of Pan troglodytes subspecies and the impact of WFDC6 selective constraints in reproductive immunity.

Ferreira Z, Hurle B, Andrés AM, Kretzschmar WW, Mullikin JC, Cherukuri PF, Cruz P, Gonder MK, Stone AC, Tishkoff S, Swanson WJ; NISC Comparative Sequencing Program, Green ED, Clark AG, Seixas S.

Genome Biol Evol. 2013;5(12):2512-23. doi: 10.1093/gbe/evt198. Erratum in: Genome Biol Evol. 2014;6(2):406.


Mitophagy is required for acute cardioprotection by simvastatin.

Andres AM, Hernandez G, Lee P, Huang C, Ratliff EP, Sin J, Thornton CA, Damasco MV, Gottlieb RA.

Antioxid Redox Signal. 2014 Nov 10;21(14):1960-73. doi: 10.1089/ars.2013.5416. Epub 2013 Sep 20.


Preservation of the native spleen in multivisceral transplantation.

Hernandez F, Andres AM, Encinas JL, Domínguez E, Gamez M, Murcia FJ, Leal N, Martinez L, Molina M, Ramos E, Sarria J, Martinez-Ojinaga E, Prieto G, Frauca E, Lopez-Santamaria M.

Pediatr Transplant. 2013 Sep;17(6):556-60. doi: 10.1111/petr.12124.


Great ape genetic diversity and population history.

Prado-Martinez J, Sudmant PH, Kidd JM, Li H, Kelley JL, Lorente-Galdos B, Veeramah KR, Woerner AE, O'Connor TD, Santpere G, Cagan A, Theunert C, Casals F, Laayouni H, Munch K, Hobolth A, Halager AE, Malig M, Hernandez-Rodriguez J, Hernando-Herraez I, Prüfer K, Pybus M, Johnstone L, Lachmann M, Alkan C, Twigg D, Petit N, Baker C, Hormozdiari F, Fernandez-Callejo M, Dabad M, Wilson ML, Stevison L, Camprubí C, Carvalho T, Ruiz-Herrera A, Vives L, Mele M, Abello T, Kondova I, Bontrop RE, Pusey A, Lankester F, Kiyang JA, Bergl RA, Lonsdorf E, Myers S, Ventura M, Gagneux P, Comas D, Siegismund H, Blanc J, Agueda-Calpena L, Gut M, Fulton L, Tishkoff SA, Mullikin JC, Wilson RK, Gut IG, Gonder MK, Ryder OA, Hahn BH, Navarro A, Akey JM, Bertranpetit J, Reich D, Mailund T, Schierup MH, Hvilsom C, Andrés AM, Wall JD, Bustamante CD, Hammer MF, Eichler EE, Marques-Bonet T.

Nature. 2013 Jul 25;499(7459):471-5. doi: 10.1038/nature12228. Epub 2013 Jul 3.


Measure for measure: comparing morphological and biomass traits for sex allocation in two gynodioecious species.

Sakai AK, Weller SG, Campbell DR, Culley TM, Dunbar-Wallis AK, Andres AM.

Am J Bot. 2013 Jun;100(6):1071-82. doi: 10.3732/ajb.1300045. Epub 2013 May 22.


Reproduction and immunity-driven natural selection in the human WFDC locus.

Ferreira Z, Seixas S, Andrés AM, Kretzschmar WW, Mullikin JC, Cherukuri PF, Cruz P, Swanson WJ; NISC Comparative Sequencing Program, Clark AG, Green ED, Hurle B.

Mol Biol Evol. 2013 Apr;30(4):938-50. doi: 10.1093/molbev/mss329. Epub 2013 Jan 4.


[Technical aspects of experimental intestinal transplant].

López-Fernández S, Hernández F, Hernández-Martín S, Barrena S, Wang Z, Zou W, Andrés AM, Encinas JL, Garriboli M, Largo C, López-Santamaría M, Tovar JA.

Cir Pediatr. 2012 Apr;25(2):103-8. Spanish.


A high-coverage genome sequence from an archaic Denisovan individual.

Meyer M, Kircher M, Gansauge MT, Li H, Racimo F, Mallick S, Schraiber JG, Jay F, Prüfer K, de Filippo C, Sudmant PH, Alkan C, Fu Q, Do R, Rohland N, Tandon A, Siebauer M, Green RE, Bryc K, Briggs AW, Stenzel U, Dabney J, Shendure J, Kitzman J, Hammer MF, Shunkov MV, Derevianko AP, Patterson N, Andrés AM, Eichler EE, Slatkin M, Reich D, Kelso J, Pääbo S.

Science. 2012 Oct 12;338(6104):222-6. doi: 10.1126/science.1224344. Epub 2012 Aug 30.


The bonobo genome compared with the chimpanzee and human genomes.

Prüfer K, Munch K, Hellmann I, Akagi K, Miller JR, Walenz B, Koren S, Sutton G, Kodira C, Winer R, Knight JR, Mullikin JC, Meader SJ, Ponting CP, Lunter G, Higashino S, Hobolth A, Dutheil J, Karakoç E, Alkan C, Sajjadian S, Catacchio CR, Ventura M, Marques-Bonet T, Eichler EE, André C, Atencia R, Mugisha L, Junhold J, Patterson N, Siebauer M, Good JM, Fischer A, Ptak SE, Lachmann M, Symer DE, Mailund T, Schierup MH, Andrés AM, Kelso J, Pääbo S.

Nature. 2012 Jun 28;486(7404):527-31. doi: 10.1038/nature11128.


Liver transplantation in children with cystic fibrosis: experience in our centre and preliminary results with a combined en bloc liver-pancreas graft.

Miguel M, Andres AM, Lopez-Santamaria M, Barrena S, Hierro L, Hernandez F, Ramírez M, Frauca E, Encinas JL, Lopez-Fernandez S, Jara P, Tovar JA.

Eur J Pediatr Surg. 2012 Feb;22(1):60-6. doi: 10.1055/s-0031-1291288. Epub 2011 Dec 7.


Preconditioning involves selective mitophagy mediated by Parkin and p62/SQSTM1.

Huang C, Andres AM, Ratliff EP, Hernandez G, Lee P, Gottlieb RA.

PLoS One. 2011;6(6):e20975. doi: 10.1371/journal.pone.0020975. Epub 2011 Jun 8.

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