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Control of RNA viruses in mosquito cells through the acquisition of vDNA and endogenous viral elements.

Tassetto M, Kunitomi M, Whitfield ZJ, Dolan PT, Sánchez-Vargas I, Garcia-Knight M, Ribiero I, Chen T, Olson KE, Andino R.

Elife. 2019 Oct 17;8. pii: e41244. doi: 10.7554/eLife.41244.


Enterovirus pathogenesis requires the host methyltransferase SETD3.

Diep J, Ooi YS, Wilkinson AW, Peters CE, Foy E, Johnson JR, Zengel J, Ding S, Weng KF, Laufman O, Jang G, Xu J, Young T, Verschueren E, Kobluk KJ, Elias JE, Sarnow P, Greenberg HB, Hüttenhain R, Nagamine CM, Andino R, Krogan NJ, Gozani O, Carette JE.

Nat Microbiol. 2019 Sep 16. doi: 10.1038/s41564-019-0551-1. [Epub ahead of print]


Viral Generated Inter-Organelle Contacts Redirect Lipid Flux for Genome Replication.

Laufman O, Perrino J, Andino R.

Cell. 2019 Jul 11;178(2):275-289.e16. doi: 10.1016/j.cell.2019.05.030. Epub 2019 Jun 13.


The safety and immunogenicity of two novel live attenuated monovalent (serotype 2) oral poliovirus vaccines in healthy adults: a double-blind, single-centre phase 1 study.

Van Damme P, De Coster I, Bandyopadhyay AS, Revets H, Withanage K, De Smedt P, Suykens L, Oberste MS, Weldon WC, Costa-Clemens SA, Clemens R, Modlin J, Weiner AJ, Macadam AJ, Andino R, Kew OM, Konopka-Anstadt JL, Burns CC, Konz J, Wahid R, Gast C.

Lancet. 2019 Jul 13;394(10193):148-158. doi: 10.1016/S0140-6736(19)31279-6. Epub 2019 Jun 4.


Zika Virus Dependence on Host Hsp70 Provides a Protective Strategy against Infection and Disease.

Taguwa S, Yeh MT, Rainbolt TK, Nayak A, Shao H, Gestwicki JE, Andino R, Frydman J.

Cell Rep. 2019 Jan 22;26(4):906-920.e3. doi: 10.1016/j.celrep.2018.12.095.


Comparative Flavivirus-Host Protein Interaction Mapping Reveals Mechanisms of Dengue and Zika Virus Pathogenesis.

Shah PS, Link N, Jang GM, Sharp PP, Zhu T, Swaney DL, Johnson JR, Von Dollen J, Ramage HR, Satkamp L, Newton B, Hüttenhain R, Petit MJ, Baum T, Everitt A, Laufman O, Tassetto M, Shales M, Stevenson E, Iglesias GN, Shokat L, Tripathi S, Balasubramaniam V, Webb LG, Aguirre S, Willsey AJ, Garcia-Sastre A, Pollard KS, Cherry S, Gamarnik AV, Marazzi I, Taunton J, Fernandez-Sesma A, Bellen HJ, Andino R, Krogan NJ.

Cell. 2018 Dec 13;175(7):1931-1945.e18. doi: 10.1016/j.cell.2018.11.028.


A Viral Protein Restricts Drosophila RNAi Immunity by Regulating Argonaute Activity and Stability.

Nayak A, Kim DY, Trnka MJ, Kerr CH, Lidsky PV, Stanley DJ, Rivera BM, Li KH, Burlingame AL, Jan E, Frydman J, Gross JD, Andino R.

Cell Host Microbe. 2018 Oct 10;24(4):542-557.e9. doi: 10.1016/j.chom.2018.09.006.


Mechanisms and Concepts in RNA Virus Population Dynamics and Evolution.

Dolan PT, Whitfield ZJ, Andino R.

Annu Rev Virol. 2018 Sep 29;5(1):69-92. doi: 10.1146/annurev-virology-101416-041718. Epub 2018 Jul 26. Review.


Hsp90 shapes protein and RNA evolution to balance trade-offs between protein stability and aggregation.

Geller R, Pechmann S, Acevedo A, Andino R, Frydman J.

Nat Commun. 2018 May 3;9(1):1781. doi: 10.1038/s41467-018-04203-x.


Mapping the Evolutionary Potential of RNA Viruses.

Dolan PT, Whitfield ZJ, Andino R.

Cell Host Microbe. 2018 Apr 11;23(4):435-446. doi: 10.1016/j.chom.2018.03.012. Review.


Vaccination strategies and results for tackling the measles outbreak in Ceará State, Brazil, 2013-2015.

Moura ADA, Carneiro AKB, Braga AVL, Bastos ECDSA, Canto SVE, Figueiredo TWS, Garcia MHO, Lemos DRQ, Andino RD.

Epidemiol Serv Saude. 2018 Feb 1;27(1):e201634310. doi: 10.5123/S1679-49742018000100010. English, Portuguese.


The Diversity, Structure, and Function of Heritable Adaptive Immunity Sequences in the Aedes aegypti Genome.

Whitfield ZJ, Dolan PT, Kunitomi M, Tassetto M, Seetin MG, Oh S, Heiner C, Paxinos E, Andino R.

Curr Biol. 2017 Nov 20;27(22):3511-3519.e7. doi: 10.1016/j.cub.2017.09.067. Epub 2017 Nov 9.


RNA Recombination Enhances Adaptability and Is Required for Virus Spread and Virulence.

Xiao Y, Rouzine IM, Bianco S, Acevedo A, Goldstein EF, Farkov M, Brodsky L, Andino R.

Cell Host Microbe. 2017 Sep 13;22(3):420. doi: 10.1016/j.chom.2017.08.006. No abstract available.


Poliovirus intrahost evolution is required to overcome tissue-specific innate immune responses.

Xiao Y, Dolan PT, Goldstein EF, Li M, Farkov M, Brodsky L, Andino R.

Nat Commun. 2017 Aug 29;8(1):375. doi: 10.1038/s41467-017-00354-5.


Topical corticosteroids or vitamin D analogues for plaque psoriasis?

Venegas-Iribarren S, Andino R.

Medwave. 2017 Jun 27;17(Suppl 2):e6981. doi: 10.5867/medwave.2017.6981. Spanish, English.


Editorial overview: Viral pathogenesis: Strategies for virus survival - Acute versus persistent infections.

Andino R, Diamond M.

Curr Opin Virol. 2017 Apr;23:v. doi: 10.1016/j.coviro.2017.06.002. No abstract available.


Variability in viral pathogenesis: modeling the dynamic of acute and persistent infections.

Lidsky PV, Andino R, Rouzine IM.

Curr Opin Virol. 2017 Apr;23:120-124. doi: 10.1016/j.coviro.2017.05.001. Epub 2017 May 25. Review.


Circulating Immune Cells Mediate a Systemic RNAi-Based Adaptive Antiviral Response in Drosophila.

Tassetto M, Kunitomi M, Andino R.

Cell. 2017 Apr 6;169(2):314-325.e13. doi: 10.1016/j.cell.2017.03.033.


Pathogenic Events in a Nonhuman Primate Model of Oral Poliovirus Infection Leading to Paralytic Poliomyelitis.

Shen L, Chen CY, Huang D, Wang R, Zhang M, Qian L, Zhu Y, Zhang AZ, Yang E, Qaqish A, Chumakov K, Kouiavskaia D, Vignuzzi M, Nathanson N, Macadam AJ, Andino R, Kew O, Xu J, Chen ZW.

J Virol. 2017 Jun 26;91(14). pii: e02310-16. doi: 10.1128/JVI.02310-16. Print 2017 Jul 15.


The Evolutionary Pathway to Virulence of an RNA Virus.

Stern A, Yeh MT, Zinger T, Smith M, Wright C, Ling G, Nielsen R, Macadam A, Andino R.

Cell. 2017 Mar 23;169(1):35-46.e19. doi: 10.1016/j.cell.2017.03.013.


Spectroscopic evidence for the origin of odd-even effects in self-assembled monolayers and effects of substrate roughness.

Chen J, Liu J, Tevis ID, Andino RS, Miller CM, Ziegler LD, Chen X, Thuo MM.

Phys Chem Chem Phys. 2017 Mar 8;19(10):6989-6995. doi: 10.1039/c6cp07580k.


Viral polymerases.

Menéndez-Arias L, Andino R.

Virus Res. 2017 Apr 15;234:1-3. doi: 10.1016/j.virusres.2017.02.003. Epub 2017 Feb 8. No abstract available.


The Dengue Virus NS5 Protein Intrudes in the Cellular Spliceosome and Modulates Splicing.

De Maio FA, Risso G, Iglesias NG, Shah P, Pozzi B, Gebhard LG, Mammi P, Mancini E, Yanovsky MJ, Andino R, Krogan N, Srebrow A, Gamarnik AV.

PLoS Pathog. 2016 Aug 30;12(8):e1005841. doi: 10.1371/journal.ppat.1005841. eCollection 2016 Aug.


Characterization of Viral Populations by Using Circular Sequencing.

Whitfield ZJ, Andino R.

J Virol. 2016 Sep 29;90(20):8950-3. doi: 10.1128/JVI.00804-14. Print 2016 Oct 15. Review.


RNA Recombination Enhances Adaptability and Is Required for Virus Spread and Virulence.

Xiao Y, Rouzine IM, Bianco S, Acevedo A, Goldstein EF, Farkov M, Brodsky L, Andino R.

Cell Host Microbe. 2016 Apr 13;19(4):493-503. doi: 10.1016/j.chom.2016.03.009. Erratum in: Cell Host Microbe. 2017 Sep 13;22(3):420.


Defining Hsp70 Subnetworks in Dengue Virus Replication Reveals Key Vulnerability in Flavivirus Infection.

Taguwa S, Maringer K, Li X, Bernal-Rubio D, Rauch JN, Gestwicki JE, Andino R, Fernandez-Sesma A, Frydman J.

Cell. 2015 Nov 19;163(5):1108-1123. doi: 10.1016/j.cell.2015.10.046. Epub 2015 Nov 12.


[Sporotrichoid-like tuberculosis: an unusual presentation of cutaneous tuberculosis in an immunocompetent patient].

Downey C, Navajas L, Andino R, Vera-Kellet C, Manríquez JJ.

Rev Chilena Infectol. 2015 Apr;32(2):234-7. doi: 10.4067/S0716-10182015000300015. Spanish.


Viral quasispecies.

Andino R, Domingo E.

Virology. 2015 May;479-480:46-51. doi: 10.1016/j.virol.2015.03.022. Epub 2015 Mar 29. Review.


Experimentally guided models reveal replication principles that shape the mutation distribution of RNA viruses.

Schulte MB, Draghi JA, Plotkin JB, Andino R.

Elife. 2015 Jan 30;4. doi: 10.7554/eLife.03753.


Rapid evolution of virus sequences in intrinsically disordered protein regions.

Gitlin L, Hagai T, LaBarbera A, Solovey M, Andino R.

PLoS Pathog. 2014 Dec 11;10(12):e1004529. doi: 10.1371/journal.ppat.1004529. eCollection 2014 Dec.


RNA virus population diversity, an optimum for maximal fitness and virulence.

Korboukh VK, Lee CA, Acevedo A, Vignuzzi M, Xiao Y, Arnold JJ, Hemperly S, Graci JD, August A, Andino R, Cameron CE.

J Biol Chem. 2014 Oct 24;289(43):29531-44. doi: 10.1074/jbc.M114.592303. Epub 2014 Sep 11.


Costs and benefits of mutational robustness in RNA viruses.

Stern A, Bianco S, Yeh MT, Wright C, Butcher K, Tang C, Nielsen R, Andino R.

Cell Rep. 2014 Aug 21;8(4):1026-36. doi: 10.1016/j.celrep.2014.07.011. Epub 2014 Aug 7.


Library preparation for highly accurate population sequencing of RNA viruses.

Acevedo A, Andino R.

Nat Protoc. 2014 Jul;9(7):1760-9. doi: 10.1038/nprot.2014.118. Epub 2014 Jun 26.


Use of host-like peptide motifs in viral proteins is a prevalent strategy in host-virus interactions.

Hagai T, Azia A, Babu MM, Andino R.

Cell Rep. 2014 Jun 12;7(5):1729-1739. doi: 10.1016/j.celrep.2014.04.052. Epub 2014 May 29.


Single-cell analysis uncovers extensive biological noise in poliovirus replication.

Schulte MB, Andino R.

J Virol. 2014 Jun;88(11):6205-12. doi: 10.1128/JVI.03539-13. Epub 2014 Mar 19.


[Linear IgA bullous dermatosis of childhood: case report].

Reyes-Baraona F, Andino R, Carrasco JE, Arriagada C, Guerrero S.

Arch Argent Pediatr. 2014 Apr;112(2):e57-60. doi: 10.1590/S0325-00752014000200016. Spanish.


RNA structure analysis of viruses using SHAPE.

Burrill CP, Andino R.

Curr Protoc Microbiol. 2013 Oct 2;30:Unit 15H.3.. doi: 10.1002/9780471729259.mc15h03s30.


Mutational and fitness landscapes of an RNA virus revealed through population sequencing.

Acevedo A, Brodsky L, Andino R.

Nature. 2014 Jan 30;505(7485):686-90. doi: 10.1038/nature12861. Epub 2013 Nov 27.


High-throughput DNA sequencing errors are reduced by orders of magnitude using circle sequencing.

Lou DI, Hussmann JA, McBee RM, Acevedo A, Andino R, Press WH, Sawyer SL.

Proc Natl Acad Sci U S A. 2013 Dec 3;110(49):19872-7. doi: 10.1073/pnas.1319590110. Epub 2013 Nov 15.


Non-specific dsRNA-mediated antiviral response in the honey bee.

Flenniken ML, Andino R.

PLoS One. 2013 Oct 10;8(10):e77263. doi: 10.1371/journal.pone.0077263. eCollection 2013.


Global RNA structure analysis of poliovirus identifies a conserved RNA structure involved in viral replication and infectivity.

Burrill CP, Westesson O, Schulte MB, Strings VR, Segal M, Andino R.

J Virol. 2013 Nov;87(21):11670-83. doi: 10.1128/JVI.01560-13. Epub 2013 Aug 21.


Poliovirus: generation, quantification, propagation, purification, and storage.

Burrill CP, Strings VR, Andino R.

Curr Protoc Microbiol. 2013;Chapter 15:Unit 15H.1. doi: 10.1002/9780471729259.mc15h01s29.


Poliovirus: generation and characterization of mutants.

Burrill CP, Strings VR, Schulte MB, Andino R.

Curr Protoc Microbiol. 2013;Chapter 15:Unit 15H.2. doi: 10.1002/9780471729259.mc15h02s29.


RNA interference-mediated intrinsic antiviral immunity in invertebrates.

Nayak A, Tassetto M, Kunitomi M, Andino R.

Curr Top Microbiol Immunol. 2013;371:183-200. doi: 10.1007/978-3-642-37765-5_7. Review.


The role of mutational robustness in RNA virus evolution.

Lauring AS, Frydman J, Andino R.

Nat Rev Microbiol. 2013 May;11(5):327-36. doi: 10.1038/nrmicro3003. Epub 2013 Mar 25. Review.


Hsp90 inhibitors exhibit resistance-free antiviral activity against respiratory syncytial virus.

Geller R, Andino R, Frydman J.

PLoS One. 2013;8(2):e56762. doi: 10.1371/journal.pone.0056762. Epub 2013 Feb 27.


Identification and manipulation of the molecular determinants influencing poliovirus recombination.

Runckel C, Westesson O, Andino R, DeRisi JL.

PLoS Pathog. 2013 Feb;9(2):e1003164. doi: 10.1371/journal.ppat.1003164. Epub 2013 Feb 7.


Codon usage determines the mutational robustness, evolutionary capacity, and virulence of an RNA virus.

Lauring AS, Acevedo A, Cooper SB, Andino R.

Cell Host Microbe. 2012 Nov 15;12(5):623-32. doi: 10.1016/j.chom.2012.10.008.


Closing the gap: the challenges in converging theoretical, computational, experimental and real-life studies in virus evolution.

Vignuzzi M, Andino R.

Curr Opin Virol. 2012 Oct;2(5):515-8. doi: 10.1016/j.coviro.2012.09.008. Epub 2012 Sep 29. No abstract available.

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