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White Matter Microstructure in Youths With Conduct Disorder: Effects of Sex and Variation in Callous Traits.

Rogers JC, Gonzalez-Madruga K, Kohls G, Baker RH, Clanton RL, Pauli R, Birch P, Chowdhury AI, Kirchner M, Andersson JLR, Smaragdi A, Puzzo I, Baumann S, Raschle NM, Fehlbaum LV, Menks WM, Steppan M, Stadler C, Konrad K, Freitag CM, Fairchild G, De Brito SA.

J Am Acad Child Adolesc Psychiatry. 2019 Apr 25. pii: S0890-8567(19)30251-5. doi: 10.1016/j.jaac.2019.02.019. [Epub ahead of print]


Incorporating non-linear alignment and multi-compartmental modeling for improved human optic nerve diffusion imaging.

Kim JW, Andersson JL, Seifert AC, Sun P, Song SK, Dula C, Naismith RT, Xu J.

Neuroimage. 2019 Aug 1;196:102-113. doi: 10.1016/j.neuroimage.2019.03.058. Epub 2019 Mar 28.


Diffusion Acceleration with Gaussian process Estimated Reconstruction (DAGER).

Wu W, Koopmans PJ, Andersson JLR, Miller KL.

Magn Reson Med. 2019 Jul;82(1):107-125. doi: 10.1002/mrm.27699. Epub 2019 Mar 1.


Automated quality control for within and between studies diffusion MRI data using a non-parametric framework for movement and distortion correction.

Bastiani M, Cottaar M, Fitzgibbon SP, Suri S, Alfaro-Almagro F, Sotiropoulos SN, Jbabdi S, Andersson JLR.

Neuroimage. 2019 Jan 1;184:801-812. doi: 10.1016/j.neuroimage.2018.09.073. Epub 2018 Sep 26.


Feasibility of Diffusion Tensor and Morphologic Imaging of Peripheral Nerves at Ultra-High Field Strength.

Schmid AB, Campbell J, Hurley SA, Jbabdi S, Andersson JL, Jenkinson M, Bangerter NK, Bennett DL, Tracey I, Frost R, Clare S.

Invest Radiol. 2018 Dec;53(12):705-713. doi: 10.1097/RLI.0000000000000492.


Peptides Derived from Histone 3 and Modified at Position 18 Inhibit Histone Demethylase KDM6 Enzymes.

Jones SE, Olsen L, Dorosz J, Seger ST, Andersson JL, Kristensen LH, Gajhede M.

Chembiochem. 2018 Sep 4;19(17):1817-1822. doi: 10.1002/cbic.201800185. Epub 2018 Jul 24.


Automated processing pipeline for neonatal diffusion MRI in the developing Human Connectome Project.

Bastiani M, Andersson JLR, Cordero-Grande L, Murgasova M, Hutter J, Price AN, Makropoulos A, Fitzgibbon SP, Hughes E, Rueckert D, Victor S, Rutherford M, Edwards AD, Smith SM, Tournier JD, Hajnal JV, Jbabdi S, Sotiropoulos SN.

Neuroimage. 2019 Jan 15;185:750-763. doi: 10.1016/j.neuroimage.2018.05.064. Epub 2018 May 28. Review.


Susceptibility-induced distortion that varies due to motion: Correction in diffusion MR without acquiring additional data.

Andersson JLR, Graham MS, Drobnjak I, Zhang H, Campbell J.

Neuroimage. 2018 May 1;171:277-295. doi: 10.1016/j.neuroimage.2017.12.040. Epub 2017 Dec 24.


Image processing and Quality Control for the first 10,000 brain imaging datasets from UK Biobank.

Alfaro-Almagro F, Jenkinson M, Bangerter NK, Andersson JLR, Griffanti L, Douaud G, Sotiropoulos SN, Jbabdi S, Hernandez-Fernandez M, Vallee E, Vidaurre D, Webster M, McCarthy P, Rorden C, Daducci A, Alexander DC, Zhang H, Dragonu I, Matthews PM, Miller KL, Smith SM.

Neuroimage. 2018 Feb 1;166:400-424. doi: 10.1016/j.neuroimage.2017.10.034. Epub 2017 Oct 24.


Lysine demethylase inhibition protects pancreatic β cells from apoptosis and improves β-cell function.

Backe MB, Andersson JL, Bacos K, Christensen DP, Hansen JB, Dorosz JJ, Gajhede M, Dahlby T, Bysani M, Kristensen LH, Ling C, Olsen L, Mandrup-Poulsen T.

Mol Cell Endocrinol. 2018 Jan 15;460:47-56. doi: 10.1016/j.mce.2017.07.001. Epub 2017 Jul 4.


Towards a comprehensive framework for movement and distortion correction of diffusion MR images: Within volume movement.

Andersson JLR, Graham MS, Drobnjak I, Zhang H, Filippini N, Bastiani M.

Neuroimage. 2017 May 15;152:450-466. doi: 10.1016/j.neuroimage.2017.02.085. Epub 2017 Mar 8.


Investigating resting-state functional connectivity in the cervical spinal cord at 3T.

Eippert F, Kong Y, Winkler AM, Andersson JL, Finsterbusch J, Büchel C, Brooks JCW, Tracey I.

Neuroimage. 2017 Feb 15;147:589-601. doi: 10.1016/j.neuroimage.2016.12.072. Epub 2016 Dec 24.


Multimodal population brain imaging in the UK Biobank prospective epidemiological study.

Miller KL, Alfaro-Almagro F, Bangerter NK, Thomas DL, Yacoub E, Xu J, Bartsch AJ, Jbabdi S, Sotiropoulos SN, Andersson JL, Griffanti L, Douaud G, Okell TW, Weale P, Dragonu I, Garratt S, Hudson S, Collins R, Jenkinson M, Matthews PM, Smith SM.

Nat Neurosci. 2016 Nov;19(11):1523-1536. doi: 10.1038/nn.4393. Epub 2016 Sep 19.


White matter integrity as a marker for cognitive plasticity in aging.

de Lange AG, Bråthen AC, Grydeland H, Sexton C, Johansen-Berg H, Andersson JL, Rohani DA, Nyberg L, Fjell AM, Walhovd KB.

Neurobiol Aging. 2016 Nov;47:74-82. doi: 10.1016/j.neurobiolaging.2016.07.007. Epub 2016 Jul 15.


The Human Connectome Project's neuroimaging approach.

Glasser MF, Smith SM, Marcus DS, Andersson JL, Auerbach EJ, Behrens TE, Coalson TS, Harms MP, Jenkinson M, Moeller S, Robinson EC, Sotiropoulos SN, Xu J, Yacoub E, Ugurbil K, Van Essen DC.

Nat Neurosci. 2016 Aug 26;19(9):1175-87. doi: 10.1038/nn.4361. Review.


Incorporating outlier detection and replacement into a non-parametric framework for movement and distortion correction of diffusion MR images.

Andersson JLR, Graham MS, Zsoldos E, Sotiropoulos SN.

Neuroimage. 2016 Nov 1;141:556-572. doi: 10.1016/j.neuroimage.2016.06.058. Epub 2016 Jul 5.


Fusion in diffusion MRI for improved fibre orientation estimation: An application to the 3T and 7T data of the Human Connectome Project.

Sotiropoulos SN, Hernández-Fernández M, Vu AT, Andersson JL, Moeller S, Yacoub E, Lenglet C, Ugurbil K, Behrens TEJ, Jbabdi S.

Neuroimage. 2016 Jul 1;134:396-409. doi: 10.1016/j.neuroimage.2016.04.014. Epub 2016 Apr 9.


The extreme capsule fiber complex in humans and macaque monkeys: a comparative diffusion MRI tractography study.

Mars RB, Foxley S, Verhagen L, Jbabdi S, Sallet J, Noonan MP, Neubert FX, Andersson JL, Croxson PL, Dunbar RI, Khrapitchev AA, Sibson NR, Miller KL, Rushworth MF.

Brain Struct Funct. 2016 Nov;221(8):4059-4071. Epub 2015 Dec 1.


An integrated approach to correction for off-resonance effects and subject movement in diffusion MR imaging.

Andersson JLR, Sotiropoulos SN.

Neuroimage. 2016 Jan 15;125:1063-1078. doi: 10.1016/j.neuroimage.2015.10.019. Epub 2015 Oct 20.


Probabilistic non-linear registration with spatially adaptive regularisation.

Simpson IJ, Cardoso MJ, Modat M, Cash DM, Woolrich MW, Andersson JL, Schnabel JA, Ourselin S; Alzheimer’s Disease Neuroimaging Initiative.

Med Image Anal. 2015 Dec;26(1):203-16. doi: 10.1016/ Epub 2015 Sep 28.


Non-parametric representation and prediction of single- and multi-shell diffusion-weighted MRI data using Gaussian processes.

Andersson JL, Sotiropoulos SN.

Neuroimage. 2015 Nov 15;122:166-76. doi: 10.1016/j.neuroimage.2015.07.067. Epub 2015 Jul 30.


A neural circuit covarying with social hierarchy in macaques.

Noonan MP, Sallet J, Mars RB, Neubert FX, O'Reilly JX, Andersson JL, Mitchell AS, Bell AH, Miller KL, Rushworth MF.

PLoS Biol. 2014 Sep 2;12(9):e1001940. doi: 10.1371/journal.pbio.1001940. eCollection 2014 Sep.


Advances in diffusion MRI acquisition and processing in the Human Connectome Project.

Sotiropoulos SN, Jbabdi S, Xu J, Andersson JL, Moeller S, Auerbach EJ, Glasser MF, Hernandez M, Sapiro G, Jenkinson M, Feinberg DA, Yacoub E, Lenglet C, Van Essen DC, Ugurbil K, Behrens TE; WU-Minn HCP Consortium.

Neuroimage. 2013 Oct 15;80:125-43. doi: 10.1016/j.neuroimage.2013.05.057. Epub 2013 May 20.


Pushing spatial and temporal resolution for functional and diffusion MRI in the Human Connectome Project.

Uğurbil K, Xu J, Auerbach EJ, Moeller S, Vu AT, Duarte-Carvajalino JM, Lenglet C, Wu X, Schmitter S, Van de Moortele PF, Strupp J, Sapiro G, De Martino F, Wang D, Harel N, Garwood M, Chen L, Feinberg DA, Smith SM, Miller KL, Sotiropoulos SN, Jbabdi S, Andersson JL, Behrens TE, Glasser MF, Van Essen DC, Yacoub E; WU-Minn HCP Consortium.

Neuroimage. 2013 Oct 15;80:80-104. doi: 10.1016/j.neuroimage.2013.05.012. Epub 2013 May 21.


The minimal preprocessing pipelines for the Human Connectome Project.

Glasser MF, Sotiropoulos SN, Wilson JA, Coalson TS, Fischl B, Andersson JL, Xu J, Jbabdi S, Webster M, Polimeni JR, Van Essen DC, Jenkinson M; WU-Minn HCP Consortium.

Neuroimage. 2013 Oct 15;80:105-24. doi: 10.1016/j.neuroimage.2013.04.127. Epub 2013 May 11.


Improving alignment in Tract-based spatial statistics: evaluation and optimization of image registration.

de Groot M, Vernooij MW, Klein S, Ikram MA, Vos FM, Smith SM, Niessen WJ, Andersson JL.

Neuroimage. 2013 Aug 1;76:400-11. doi: 10.1016/j.neuroimage.2013.03.015. Epub 2013 Mar 22.


Effects of image reconstruction on fiber orientation mapping from multichannel diffusion MRI: reducing the noise floor using SENSE.

Sotiropoulos SN, Moeller S, Jbabdi S, Xu J, Andersson JL, Auerbach EJ, Yacoub E, Feinberg D, Setsompop K, Wald LL, Behrens TE, Ugurbil K, Lenglet C.

Magn Reson Med. 2013 Dec;70(6):1682-9. doi: 10.1002/mrm.24623. Epub 2013 Feb 7.


RubiX: combining spatial resolutions for Bayesian inference of crossing fibers in diffusion MRI.

Sotiropoulos SN, Jbabdi S, Andersson JL, Woolrich MW, Ugurbil K, Behrens TE.

IEEE Trans Med Imaging. 2013 Jun;32(6):969-82. doi: 10.1109/TMI.2012.2231873. Epub 2013 Jan 25.


Ensemble learning incorporating uncertain registration.

Simpson IJ, Woolrich MW, Andersson JL, Groves AR, Schnabel JA.

IEEE Trans Med Imaging. 2013 Apr;32(4):748-56. doi: 10.1109/TMI.2012.2236651. Epub 2012 Dec 27.


Social network size affects neural circuits in macaques.

Sallet J, Mars RB, Noonan MP, Andersson JL, O'Reilly JX, Jbabdi S, Croxson PL, Jenkinson M, Miller KL, Rushworth MF.

Science. 2011 Nov 4;334(6056):697-700. doi: 10.1126/science.1210027.


Probabilistic inference of regularisation in non-rigid registration.

Simpson IJ, Schnabel JA, Groves AR, Andersson JL, Woolrich MW.

Neuroimage. 2012 Feb 1;59(3):2438-51. doi: 10.1016/j.neuroimage.2011.09.002. Epub 2011 Sep 10.


Reducing distortions in diffusion-weighted echo planar imaging with a dual-echo blip-reversed sequence.

Gallichan D, Andersson JL, Jenkinson M, Robson MD, Miller KL.

Magn Reson Med. 2010 Aug;64(2):382-90. doi: 10.1002/mrm.22318.


Surgical team training: the Northwestern Memorial Hospital experience.

Halverson AL, Andersson JL, Anderson K, Lombardo J, Park CS, Rademaker AW, Moorman DW.

Arch Surg. 2009 Feb;144(2):107-12. doi: 10.1001/archsurg.2008.545.


Maximum a posteriori estimation of diffusion tensor parameters using a Rician noise model: why, how and but.

Andersson JL.

Neuroimage. 2008 Oct 1;42(4):1340-56. doi: 10.1016/j.neuroimage.2008.05.053. Epub 2008 Jun 6.


A Bayesian framework for global tractography.

Jbabdi S, Woolrich MW, Andersson JL, Behrens TE.

Neuroimage. 2007 Aug 1;37(1):116-29. Epub 2007 Apr 27.


The evolution of prefrontal inputs to the cortico-pontine system: diffusion imaging evidence from Macaque monkeys and humans.

Ramnani N, Behrens TE, Johansen-Berg H, Richter MC, Pinsk MA, Andersson JL, Rudebeck P, Ciccarelli O, Richter W, Thompson AJ, Gross CG, Robson MD, Kastner S, Matthews PM.

Cereb Cortex. 2006 Jun;16(6):811-8. Epub 2005 Aug 24.


Free water surface wetlands for wastewater treatment in Sweden: nitrogen and phosphorus removal.

Andersson JL, Kallner Bastviken S, Tonderski KS.

Water Sci Technol. 2005;51(9):39-46.


Haemodynamic and metabolic disturbances in the acute stage of subarachnoid haemorrhage demonstrated by PET.

Frykholm P, Andersson JL, Långström B, Persson L, Enblad P.

Acta Neurol Scand. 2004 Jan;109(1):25-32.


A template for spatial normalisation of MR images of the rat brain.

Schweinhardt P, Fransson P, Olson L, Spenger C, Andersson JL.

J Neurosci Methods. 2003 Oct 30;129(2):105-13.


Preterm children have disturbances of white matter at 11 years of age as shown by diffusion tensor imaging.

Nagy Z, Westerberg H, Skare S, Andersson JL, Lilja A, Flodmark O, Fernell E, Holmberg K, Bohm B, Forssberg H, Lagercrantz H, Klingberg T.

Pediatr Res. 2003 Nov;54(5):672-9. Epub 2003 Aug 6.


Right-sided human prefrontal brain activation during acquisition of conditioned fear.

Fischer H, Andersson JL, Furmark T, Wik G, Fredrikson M.

Emotion. 2002 Sep;2(3):233-41.


On the effects of gating in diffusion imaging of the brain using single shot EPI.

Skare S, Andersson JL.

Magn Reson Imaging. 2001 Oct;19(8):1125-8.


Abnormal brain white matter in schizophrenia: a diffusion tensor imaging study.

Agartz I, Andersson JL, Skare S.

Neuroreport. 2001 Jul 20;12(10):2251-4.


A global estimator unbiased by local changes.

Andersson JL, Ashburner J, Friston K.

Neuroimage. 2001 Jun;13(6 Pt 1):1193-206.


Modeling geometric deformations in EPI time series.

Andersson JL, Hutton C, Ashburner J, Turner R, Friston K.

Neuroimage. 2001 May;13(5):903-19.


Fear conditioning and brain activity: a positron emission tomography study in humans.

Fischer H, Andersson JL, Furmark T, Fredrikson M.

Behav Neurosci. 2000 Aug;114(4):671-80.


Improved efficiency for MRI-SPET registration based on mutual information.

Thurfjell L, Lau YH, Andersson JL, Hutton BF.

Eur J Nucl Med. 2000 Jul;27(7):847-56.


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