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Items: 1 to 50 of 65

1.

Effects of allochthonous dissolved organic matter input on microbial composition and nitrogen-cycling genes at two contrasting estuarine sites.

Happel EM, Markussen T, Teikari JE, Huchaiah V, Alneberg J, Andersson AF, Sivonen K, Middelboe M, Kisand V, Riemann L.

FEMS Microbiol Ecol. 2019 Sep 1;95(9). pii: fiz123. doi: 10.1093/femsec/fiz123.

PMID:
31397876
2.

Identification of Salivary Microbiota and Its Association With Host Inflammatory Mediators in Periodontitis.

Lundmark A, Hu YOO, Huss M, Johannsen G, Andersson AF, Yucel-Lindberg T.

Front Cell Infect Microbiol. 2019 Jun 21;9:216. doi: 10.3389/fcimb.2019.00216. eCollection 2019.

3.

Individual Physiological Adaptations Enable Selected Bacterial Taxa To Prevail during Long-Term Incubations.

Herlemann DPR, Markert S, Meeske C, Andersson AF, de Bruijn I, Hentschker C, Unfried F, Becher D, Jürgens K, Schweder T.

Appl Environ Microbiol. 2019 Jul 18;85(15). pii: e00825-19. doi: 10.1128/AEM.00825-19. Print 2019 Aug 1.

PMID:
31152013
4.

Periodontal Health and Oral Microbiota in Patients with Rheumatoid Arthritis.

Eriksson K, Fei G, Lundmark A, Benchimol D, Lee L, Hu YOO, Kats A, Saevarsdottir S, Catrina AI, Klinge B, Andersson AF, Klareskog L, Lundberg K, Jansson L, Yucel-Lindberg T.

J Clin Med. 2019 May 8;8(5). pii: E630. doi: 10.3390/jcm8050630.

5.

Atmospheric Deposition Impact on Bacterial Community Composition in the NW Mediterranean.

Marín-Beltrán I, Logue JB, Andersson AF, Peters F.

Front Microbiol. 2019 Apr 24;10:858. doi: 10.3389/fmicb.2019.00858. eCollection 2019.

6.

Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential.

Wampach L, Heintz-Buschart A, Fritz JV, Ramiro-Garcia J, Habier J, Herold M, Narayanasamy S, Kaysen A, Hogan AH, Bindl L, Bottu J, Halder R, Sjöqvist C, May P, Andersson AF, de Beaufort C, Wilmes P.

Nat Commun. 2018 Nov 30;9(1):5091. doi: 10.1038/s41467-018-07631-x.

7.

AFISsys - An autonomous instrument for the preservation of brackish water samples for microbial metatranscriptome analysis.

Charvet S, Riemann L, Alneberg J, Andersson AF, von Borries J, Fischer U, Labrenz M.

Water Res. 2019 Feb 1;149:351-361. doi: 10.1016/j.watres.2018.11.017. Epub 2018 Nov 12.

PMID:
30469021
8.

Prevalent reliance of bacterioplankton on exogenous vitamin B1 and precursor availability.

Paerl RW, Sundh J, Tan D, Svenningsen SL, Hylander S, Pinhassi J, Andersson AF, Riemann L.

Proc Natl Acad Sci U S A. 2018 Oct 30;115(44):E10447-E10456. doi: 10.1073/pnas.1806425115. Epub 2018 Oct 15.

9.

Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes.

Alneberg J, Karlsson CMG, Divne AM, Bergin C, Homa F, Lindh MV, Hugerth LW, Ettema TJG, Bertilsson S, Andersson AF, Pinhassi J.

Microbiome. 2018 Sep 28;6(1):173. doi: 10.1186/s40168-018-0550-0.

10.

Biogeochemical Cycling by a Low-Diversity Microbial Community in Deep Groundwater.

Bell E, Lamminmäki T, Alneberg J, Andersson AF, Qian C, Xiong W, Hettich RL, Balmer L, Frutschi M, Sommer G, Bernier-Latmani R.

Front Microbiol. 2018 Sep 7;9:2129. doi: 10.3389/fmicb.2018.02129. eCollection 2018.

11.

New mitochondrial primers for metabarcoding of insects, designed and evaluated using in silico methods.

Marquina D, Andersson AF, Ronquist F.

Mol Ecol Resour. 2019 Jan;19(1):90-104. doi: 10.1111/1755-0998.12942. Epub 2018 Oct 16.

PMID:
30226026
12.

Stationary and portable sequencing-based approaches for tracing wastewater contamination in urban stormwater systems.

Hu YOO, Ndegwa N, Alneberg J, Johansson S, Logue JB, Huss M, Käller M, Lundeberg J, Fagerberg J, Andersson AF.

Sci Rep. 2018 Aug 9;8(1):11907. doi: 10.1038/s41598-018-29920-7.

13.

Coupling biogeochemical process rates and metagenomic blueprints of coastal bacterial assemblages in the context of environmental change.

Markussen T, Happel EM, Teikari JE, Huchaiah V, Alneberg J, Andersson AF, Sivonen K, Riemann L, Middelboe M, Kisand V.

Environ Microbiol. 2018 Aug;20(8):3083-3099. doi: 10.1111/1462-2920.14371. Epub 2018 Sep 19.

PMID:
30084235
14.

BARM and BalticMicrobeDB, a reference metagenome and interface to meta-omic data for the Baltic Sea.

Alneberg J, Sundh J, Bennke C, Beier S, Lundin D, Hugerth LW, Pinhassi J, Kisand V, Riemann L, Jürgens K, Labrenz M, Andersson AF.

Sci Data. 2018 Jul 31;5:180146. doi: 10.1038/sdata.2018.146.

15.

Multiscale patterns and drivers of arbuscular mycorrhizal fungal communities in the roots and root-associated soil of a wild perennial herb.

Rasmussen PU, Hugerth LW, Blanchet FG, Andersson AF, Lindahl BD, Tack AJM.

New Phytol. 2018 Dec;220(4):1248-1261. doi: 10.1111/nph.15088. Epub 2018 Mar 24.

16.

Analysing Microbial Community Composition through Amplicon Sequencing: From Sampling to Hypothesis Testing.

Hugerth LW, Andersson AF.

Front Microbiol. 2017 Sep 4;8:1561. doi: 10.3389/fmicb.2017.01561. eCollection 2017. Review.

17.

Ninety-nine de novo assembled genomes from the moose (Alces alces) rumen microbiome provide new insights into microbial plant biomass degradation.

Svartström O, Alneberg J, Terrapon N, Lombard V, de Bruijn I, Malmsten J, Dalin AM, El Muller E, Shah P, Wilmes P, Henrissat B, Aspeborg H, Andersson AF.

ISME J. 2017 Nov;11(11):2538-2551. doi: 10.1038/ismej.2017.108. Epub 2017 Jul 21.

18.

Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life.

Wampach L, Heintz-Buschart A, Hogan A, Muller EEL, Narayanasamy S, Laczny CC, Hugerth LW, Bindl L, Bottu J, Andersson AF, de Beaufort C, Wilmes P.

Front Microbiol. 2017 May 2;8:738. doi: 10.3389/fmicb.2017.00738. eCollection 2017.

19.

Improvement of identification methods for honeybee specific Lactic Acid Bacteria; future approaches.

Lamei S, Hu YO, Olofsson TC, Andersson AF, Forsgren E, Vásquez A.

PLoS One. 2017 Mar 27;12(3):e0174614. doi: 10.1371/journal.pone.0174614. eCollection 2017.

20.

Potential for hydrogen-oxidizing chemolithoautotrophic and diazotrophic populations to initiate biofilm formation in oligotrophic, deep terrestrial subsurface waters.

Wu X, Pedersen K, Edlund J, Eriksson L, Åström M, Andersson AF, Bertilsson S, Dopson M.

Microbiome. 2017 Mar 23;5(1):37. doi: 10.1186/s40168-017-0253-y.

21.

Metapopulation theory identifies biogeographical patterns among core and satellite marine bacteria scaling from tens to thousands of kilometers.

Lindh MV, Sjöstedt J, Ekstam B, Casini M, Lundin D, Hugerth LW, Hu YO, Andersson AF, Andersson A, Legrand C, Pinhassi J.

Environ Microbiol. 2017 Mar;19(3):1222-1236. doi: 10.1111/1462-2920.13650. Epub 2017 Feb 6.

PMID:
28028880
22.

Phylogenetic Signals of Salinity and Season in Bacterial Community Composition Across the Salinity Gradient of the Baltic Sea.

Herlemann DP, Lundin D, Andersson AF, Labrenz M, Jürgens K.

Front Microbiol. 2016 Nov 24;7:1883. eCollection 2016.

23.

Genomic analysis reveals the presence of a class D beta-lactamase with broad substrate specificity in animal bite associated Capnocytophaga species.

Zangenah S, Andersson AF, Özenci V, Bergman P.

Eur J Clin Microbiol Infect Dis. 2017 Apr;36(4):657-662. doi: 10.1007/s10096-016-2842-2. Epub 2016 Dec 1.

24.

Reconstructing a hydrogen-driven microbial metabolic network in Opalinus Clay rock.

Bagnoud A, Chourey K, Hettich RL, de Bruijn I, Andersson AF, Leupin OX, Schwyn B, Bernier-Latmani R.

Nat Commun. 2016 Oct 14;7:12770. doi: 10.1038/ncomms12770.

25.

Diversity of Pico- to Mesoplankton along the 2000 km Salinity Gradient of the Baltic Sea.

Hu YO, Karlson B, Charvet S, Andersson AF.

Front Microbiol. 2016 May 12;7:679. doi: 10.3389/fmicb.2016.00679. eCollection 2016.

26.

Whole genome sequencing identifies a novel species of the genus Capnocytophaga isolated from dog and cat bite wounds in humans.

Zangenah S, Abbasi N, Andersson AF, Bergman P.

Sci Rep. 2016 Mar 7;6:22919. doi: 10.1038/srep22919.

27.

Metagenome-assembled genomes uncover a global brackish microbiome.

Hugerth LW, Larsson J, Alneberg J, Lindh MV, Legrand C, Pinhassi J, Andersson AF.

Genome Biol. 2015 Dec 14;16:279. doi: 10.1186/s13059-015-0834-7.

28.

A minimalistic microbial food web in an excavated deep subsurface clay rock.

Bagnoud A, de Bruijn I, Andersson AF, Diomidis N, Leupin OX, Schwyn B, Bernier-Latmani R.

FEMS Microbiol Ecol. 2016 Jan;92(1). pii: fiv138. doi: 10.1093/femsec/fiv138. Epub 2015 Nov 4.

PMID:
26542073
29.

Experimental insights into the importance of aquatic bacterial community composition to the degradation of dissolved organic matter.

Logue JB, Stedmon CA, Kellerman AM, Nielsen NJ, Andersson AF, Laudon H, Lindström ES, Kritzberg ES.

ISME J. 2016 Mar;10(3):533-45. doi: 10.1038/ismej.2015.131. Epub 2015 Aug 21.

30.

Phasing of single DNA molecules by massively parallel barcoding.

Borgström E, Redin D, Lundin S, Berglund E, Andersson AF, Ahmadian A.

Nat Commun. 2015 Jun 9;6:7173. doi: 10.1038/ncomms8173.

31.

Disentangling seasonal bacterioplankton population dynamics by high-frequency sampling.

Lindh MV, Sjöstedt J, Andersson AF, Baltar F, Hugerth LW, Lundin D, Muthusamy S, Legrand C, Pinhassi J.

Environ Microbiol. 2015 Jul;17(7):2459-76. doi: 10.1111/1462-2920.12720. Epub 2015 Jan 27.

PMID:
25403576
32.

Binning metagenomic contigs by coverage and composition.

Alneberg J, Bjarnason BS, de Bruijn I, Schirmer M, Quick J, Ijaz UZ, Lahti L, Loman NJ, Andersson AF, Quince C.

Nat Methods. 2014 Nov;11(11):1144-6. doi: 10.1038/nmeth.3103. Epub 2014 Sep 14.

PMID:
25218180
33.

DegePrime, a program for degenerate primer design for broad-taxonomic-range PCR in microbial ecology studies.

Hugerth LW, Wefer HA, Lundin S, Jakobsson HE, Lindberg M, Rodin S, Engstrand L, Andersson AF.

Appl Environ Microbiol. 2014 Aug;80(16):5116-23. doi: 10.1128/AEM.01403-14. Epub 2014 Jun 13.

34.

Rolf Bernander (1956-2014): pioneer of the archaeal cell cycle.

Ettema TJ, Lindås AC, Hjort K, Poplawski AB, Kaessmann H, Grogan DW, Kelman Z, Andersson AF, Pelve EA, Lundgren M, Svärd SG.

Mol Microbiol. 2014 Jun;92(5):903-9. doi: 10.1111/mmi.12608. Erratum in: Mol Microbiol. 2014 Aug;93(3):582.

35.

Systematic design of 18S rRNA gene primers for determining eukaryotic diversity in microbial consortia.

Hugerth LW, Muller EE, Hu YO, Lebrun LA, Roume H, Lundin D, Wilmes P, Andersson AF.

PLoS One. 2014 Apr 22;9(4):e95567. doi: 10.1371/journal.pone.0095567. eCollection 2014. Erratum in: PLoS One. 2015;10(1):e0117636.

36.

Functional tradeoffs underpin salinity-driven divergence in microbial community composition.

Dupont CL, Larsson J, Yooseph S, Ininbergs K, Goll J, Asplund-Samuelsson J, McCrow JP, Celepli N, Allen LZ, Ekman M, Lucas AJ, Hagström Å, Thiagarajan M, Brindefalk B, Richter AR, Andersson AF, Tenney A, Lundin D, Tovchigrechko A, Nylander JA, Brami D, Badger JH, Allen AE, Rusch DB, Hoffman J, Norrby E, Friedman R, Pinhassi J, Venter JC, Bergman B.

PLoS One. 2014 Feb 27;9(2):e89549. doi: 10.1371/journal.pone.0089549. eCollection 2014.

37.

Low gut microbiota diversity in early infancy precedes asthma at school age.

Abrahamsson TR, Jakobsson HE, Andersson AF, Björkstén B, Engstrand L, Jenmalm MC.

Clin Exp Allergy. 2014 Jun;44(6):842-50. doi: 10.1111/cea.12253.

38.

Decreased gut microbiota diversity, delayed Bacteroidetes colonisation and reduced Th1 responses in infants delivered by caesarean section.

Jakobsson HE, Abrahamsson TR, Jenmalm MC, Harris K, Quince C, Jernberg C, Björkstén B, Engstrand L, Andersson AF.

Gut. 2014 Apr;63(4):559-66. doi: 10.1136/gutjnl-2012-303249. Epub 2013 Aug 7.

39.

Which sequencing depth is sufficient to describe patterns in bacterial α- and β-diversity?

Lundin D, Severin I, Logue JB, Ostman O, Andersson AF, Lindström ES.

Environ Microbiol Rep. 2012 Jun;4(3):367-72. doi: 10.1111/j.1758-2229.2012.00345.x. Epub 2012 Apr 23.

PMID:
23760801
40.

Metagenomic de novo assembly of an aquatic representative of the verrucomicrobial class Spartobacteria.

Herlemann DP, Lundin D, Labrenz M, Jürgens K, Zheng Z, Aspeborg H, Andersson AF.

MBio. 2013 May 28;4(3):e00569-12. doi: 10.1128/mBio.00569-12.

41.

Active nitrogen-fixing heterotrophic bacteria at and below the chemocline of the central Baltic Sea.

Farnelid H, Bentzon-Tilia M, Andersson AF, Bertilsson S, Jost G, Labrenz M, Jürgens K, Riemann L.

ISME J. 2013 Jul;7(7):1413-23. doi: 10.1038/ismej.2013.26. Epub 2013 Feb 28.

42.

The impact of Crohn's disease genes on healthy human gut microbiota: a pilot study.

Quince C, Lundin EE, Andreasson AN, Greco D, Rafter J, Talley NJ, Agreus L, Andersson AF, Engstrand L, D'Amato M.

Gut. 2013 Jun;62(6):952-4. doi: 10.1136/gutjnl-2012-304214. Epub 2013 Jan 7. No abstract available.

PMID:
23297005
43.

Reply: To PMID 22153774.

Abrahamsson TR, Jakobsson HE, Andersson AF, Björkstén B, Engstrand L, Jenmalm MC.

J Allergy Clin Immunol. 2013 Jan;131(1):248-9. doi: 10.1016/j.jaci.2012.10.045. Epub 2012 Nov 27. No abstract available.

PMID:
23199606
44.

Bacterial community composition in the water column of a lake formed by a former uranium open pit mine.

Edberg F, Andersson AF, Holmström SJ.

Microb Ecol. 2012 Nov;64(4):870-80. doi: 10.1007/s00248-012-0069-z. Epub 2012 May 24.

PMID:
22622763
45.

Freshwater bacterioplankton richness in oligotrophic lakes depends on nutrient availability rather than on species-area relationships.

Logue JB, Langenheder S, Andersson AF, Bertilsson S, Drakare S, Lanzén A, Lindström ES.

ISME J. 2012 Jun;6(6):1127-36. doi: 10.1038/ismej.2011.184. Epub 2011 Dec 15.

46.

Low diversity of the gut microbiota in infants with atopic eczema.

Abrahamsson TR, Jakobsson HE, Andersson AF, Björkstén B, Engstrand L, Jenmalm MC.

J Allergy Clin Immunol. 2012 Feb;129(2):434-40, 440.e1-2. doi: 10.1016/j.jaci.2011.10.025. Epub 2011 Dec 6.

47.

Genome sequencing reveals a phage in Helicobacter pylori.

Lehours P, Vale FF, Bjursell MK, Melefors O, Advani R, Glavas S, Guegueniat J, Gontier E, Lacomme S, Alves Matos A, Menard A, Mégraud F, Engstrand L, Andersson AF.

MBio. 2011 Nov 15;2(6). pii: e00239-11. doi: 10.1128/mBio.00239-11. Print 2011.

48.

A method for metagenomics of Helicobacter pylori from archived formalin-fixed gastric biopsies permitting longitudinal studies of carcinogenic risk.

Zheng Z, Andersson AF, Ye W, Nyrén O, Normark S, Engstrand L.

PLoS One. 2011;6(10):e26442. doi: 10.1371/journal.pone.0026442. Epub 2011 Oct 21.

49.

Titration-free 454 sequencing using Y adapters.

Zheng Z, Advani A, Melefors Ö, Glavas S, Nordström H, Ye W, Engstrand L, Andersson AF.

Nat Protoc. 2011 Aug 18;6(9):1367-76. doi: 10.1038/nprot.2011.369.

PMID:
21886102
50.

Rapid screening of complex DNA samples by single-molecule amplification and sequencing.

Huang J, Zheng Z, Andersson AF, Engstrand L, Ye W.

PLoS One. 2011;6(5):e19723. doi: 10.1371/journal.pone.0019723. Epub 2011 May 19.

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