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Items: 1 to 50 of 88

1.

Genome sequence of the progenitor of the wheat D genome Aegilops tauschii.

Luo MC, Gu YQ, Puiu D, Wang H, Twardziok SO, Deal KR, Huo N, Zhu T, Wang L, Wang Y, McGuire PE, Liu S, Long H, Ramasamy RK, Rodriguez JC, Van SL, Yuan L, Wang Z, Xia Z, Xiao L, Anderson OD, Ouyang S, Liang Y, Zimin AV, Pertea G, Qi P, Bennetzen JL, Dai X, Dawson MW, Müller HG, Kugler K, Rivarola-Duarte L, Spannagl M, Mayer KFX, Lu FH, Bevan MW, Leroy P, Li P, You FM, Sun Q, Liu Z, Lyons E, Wicker T, Salzberg SL, Devos KM, Dvořák J.

Nature. 2017 Nov 23;551(7681):498-502. doi: 10.1038/nature24486. Epub 2017 Nov 15.

PMID:
29143815
2.

New insights into structural organization and gene duplication in a 1.75-Mb genomic region harboring the α-gliadin gene family in Aegilops tauschii, the source of wheat D genome.

Huo N, Dong L, Zhang S, Wang Y, Zhu T, Mohr T, Altenbach S, Liu Z, Dvorak J, Anderson OD, Luo MC, Wang D, Gu YQ.

Plant J. 2017 Nov;92(4):571-583. doi: 10.1111/tpj.13675. Epub 2017 Oct 9.

3.

Sequencing and comparative analyses of Aegilops tauschii chromosome arm 3DS reveal rapid evolution of Triticeae genomes.

Xie J, Huo N, Zhou S, Wang Y, Guo G, Deal KR, Ouyang S, Liang Y, Wang Z, Xiao L, Zhu T, Hu T, Tiwari V, Zhang J, Li H, Ni Z, Yao Y, Peng H, Zhang S, Anderson OD, McGuire PE, Dvorak J, Luo MC, Liu Z, Gu YQ, Sun Q.

J Genet Genomics. 2017 Jan 20;44(1):51-61. doi: 10.1016/j.jgg.2016.09.005. Epub 2016 Oct 5.

PMID:
27765484
4.

Rapid evolutionary dynamics in a 2.8-Mb chromosomal region containing multiple prolamin and resistance gene families in Aegilops tauschii.

Dong L, Huo N, Wang Y, Deal K, Wang D, Hu T, Dvorak J, Anderson OD, Luo MC, Gu YQ.

Plant J. 2016 Sep;87(5):495-506. doi: 10.1111/tpj.13214. Epub 2016 Aug 21.

5.

Characterization of ferredoxin-dependent glutamine-oxoglutarate amidotransferase (Fd-GOGAT) genes and their relationship with grain protein content QTL in wheat.

Nigro D, Blanco A, Anderson OD, Gadaleta A.

PLoS One. 2014 Aug 6;9(8):e103869. doi: 10.1371/journal.pone.0103869. eCollection 2014.

6.

The spectrum of major seed storage genes and proteins in oats (Avena sativa).

Anderson OD.

PLoS One. 2014 Jul 23;9(7):e83569. doi: 10.1371/journal.pone.0083569. eCollection 2014.

7.

Haplotype variation of Glu-D1 locus and the origin of Glu-D1d allele conferring superior end-use qualities in common wheat.

Dong Z, Yang Y, Li Y, Zhang K, Lou H, An X, Dong L, Gu YQ, Anderson OD, Liu X, Qin H, Wang D.

PLoS One. 2013 Sep 30;8(9):e74859. doi: 10.1371/journal.pone.0074859. eCollection 2013.

8.

Structural analysis of the wheat genes encoding NADH-dependent glutamine-2-oxoglutarate amidotransferases and correlation with grain protein content.

Nigro D, Gu YQ, Huo N, Marcotuli I, Blanco A, Gadaleta A, Anderson OD.

PLoS One. 2013 Sep 17;8(9):e73751. doi: 10.1371/journal.pone.0073751. eCollection 2013.

9.

The B-hordein prolamin family of barley.

Anderson OD.

Genome. 2013 Mar;56(3):179-85. doi: 10.1139/gen-2013-0016. Epub 2013 Mar 28.

PMID:
23659702
10.

A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor.

Luo MC, Gu YQ, You FM, Deal KR, Ma Y, Hu Y, Huo N, Wang Y, Wang J, Chen S, Jorgensen CM, Zhang Y, McGuire PE, Pasternak S, Stein JC, Ware D, Kramer M, McCombie WR, Kianian SF, Martis MM, Mayer KF, Sehgal SK, Li W, Gill BS, Bevan MW, Simková H, Dolezel J, Weining S, Lazo GR, Anderson OD, Dvorak J.

Proc Natl Acad Sci U S A. 2013 May 7;110(19):7940-5. doi: 10.1073/pnas.1219082110. Epub 2013 Apr 22.

11.

The gene space in wheat: the complete γ-gliadin gene family from the wheat cultivar Chinese Spring.

Anderson OD, Huo N, Gu YQ.

Funct Integr Genomics. 2013 Jun;13(2):261-73. doi: 10.1007/s10142-013-0321-8. Epub 2013 Apr 7.

PMID:
23564033
12.

Insular organization of gene space in grass genomes.

Gottlieb A, Müller HG, Massa AN, Wanjugi H, Deal KR, You FM, Xu X, Gu YQ, Luo MC, Anderson OD, Chan AP, Rabinowicz P, Devos KM, Dvorak J.

PLoS One. 2013;8(1):e54101. doi: 10.1371/journal.pone.0054101. Epub 2013 Jan 11.

13.

A new class of wheat gliadin genes and proteins.

Anderson OD, Dong L, Huo N, Gu YQ.

PLoS One. 2012;7(12):e52139. doi: 10.1371/journal.pone.0052139. Epub 2012 Dec 20.

14.

Exploring the diploid wheat ancestral A genome through sequence comparison at the high-molecular-weight glutenin locus region.

Dong L, Huo N, Wang Y, Deal K, Luo MC, Wang D, Anderson OD, Gu YQ.

Mol Genet Genomics. 2012 Dec;287(11-12):855-66. doi: 10.1007/s00438-012-0721-9. Epub 2012 Sep 28.

PMID:
23052831
15.

Gene space dynamics during the evolution of Aegilops tauschii, Brachypodium distachyon, Oryza sativa, and Sorghum bicolor genomes.

Massa AN, Wanjugi H, Deal KR, O'Brien K, You FM, Maiti R, Chan AP, Gu YQ, Luo MC, Anderson OD, Rabinowicz PD, Dvorak J, Devos KM.

Mol Biol Evol. 2011 Sep;28(9):2537-47. doi: 10.1093/molbev/msr080. Epub 2011 Apr 6.

16.

Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence.

You FM, Huo N, Deal KR, Gu YQ, Luo MC, McGuire PE, Dvorak J, Anderson OD.

BMC Genomics. 2011 Jan 25;12:59. doi: 10.1186/1471-2164-12-59.

17.

Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes.

Akhunov ED, Akhunova AR, Anderson OD, Anderson JA, Blake N, Clegg MT, Coleman-Derr D, Conley EJ, Crossman CC, Deal KR, Dubcovsky J, Gill BS, Gu YQ, Hadam J, Heo H, Huo N, Lazo GR, Luo MC, Ma YQ, Matthews DE, McGuire PE, Morrell PL, Qualset CO, Renfro J, Tabanao D, Talbert LE, Tian C, Toleno DM, Warburton ML, You FM, Zhang W, Dvorak J.

BMC Genomics. 2010 Dec 14;11:702. doi: 10.1186/1471-2164-11-702.

18.

A new implementation of high-throughput five-dimensional clone pooling strategy for BAC library screening.

You FM, Luo MC, Xu K, Deal KR, Anderson OD, Dvorak J.

BMC Genomics. 2010 Dec 6;11:692. doi: 10.1186/1471-2164-11-692.

19.

Structural and transcriptional analysis of plant genes encoding the bifunctional lysine ketoglutarate reductase saccharopine dehydrogenase enzyme.

Anderson OD, Coleman-Derr D, Gu YQ, Heath S.

BMC Plant Biol. 2010 Jun 16;10:113. doi: 10.1186/1471-2229-10-113.

20.

Physical mapping of a large plant genome using global high-information-content-fingerprinting: the distal region of the wheat ancestor Aegilops tauschii chromosome 3DS.

Fleury D, Luo MC, Dvorak J, Ramsay L, Gill BS, Anderson OD, You FM, Shoaei Z, Deal KR, Langridge P.

BMC Genomics. 2010 Jun 17;11:382. doi: 10.1186/1471-2164-11-382.

21.

RJPrimers: unique transposable element insertion junction discovery and PCR primer design for marker development.

You FM, Wanjugi H, Huo N, Lazo GR, Luo MC, Anderson OD, Dvorak J, Gu YQ.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W313-20. doi: 10.1093/nar/gkq425. Epub 2010 May 23.

22.

Feasibility of physical map construction from fingerprinted bacterial artificial chromosome libraries of polyploid plant species.

Luo MC, Ma Y, You FM, Anderson OD, Kopecký D, Simková H, Safár J, Dolezel J, Gill B, McGuire PE, Dvorak J.

BMC Genomics. 2010 Feb 19;11:122. doi: 10.1186/1471-2164-11-122.

23.

A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat.

Gu YQ, Ma Y, Huo N, Vogel JP, You FM, Lazo GR, Nelson WM, Soderlund C, Dvorak J, Anderson OD, Luo MC.

BMC Genomics. 2009 Oct 27;10:496. doi: 10.1186/1471-2164-10-496.

24.

ConservedPrimers 2.0: a high-throughput pipeline for comparative genome referenced intron-flanking PCR primer design and its application in wheat SNP discovery.

You FM, Huo N, Gu YQ, Lazo GR, Dvorak J, Anderson OD.

BMC Bioinformatics. 2009 Oct 13;10:331. doi: 10.1186/1471-2105-10-331.

25.
26.

Genome comparisons reveal a dominant mechanism of chromosome number reduction in grasses and accelerated genome evolution in Triticeae.

Luo MC, Deal KR, Akhunov ED, Akhunova AR, Anderson OD, Anderson JA, Blake N, Clegg MT, Coleman-Derr D, Conley EJ, Crossman CC, Dubcovsky J, Gill BS, Gu YQ, Hadam J, Heo HY, Huo N, Lazo G, Ma Y, Matthews DE, McGuire PE, Morrell PL, Qualset CO, Renfro J, Tabanao D, Talbert LE, Tian C, Toleno DM, Warburton ML, You FM, Zhang W, Dvorak J.

Proc Natl Acad Sci U S A. 2009 Sep 15;106(37):15780-5. doi: 10.1073/pnas.0908195106. Epub 2009 Aug 26.

27.

Conserved globulin gene across eight grass genomes identify fundamental units of the loci encoding seed storage proteins.

Gu YQ, Wanjugi H, Coleman-Derr D, Kong X, Anderson OD.

Funct Integr Genomics. 2010 Mar;10(1):111-22. doi: 10.1007/s10142-009-0135-x. Epub 2009 Aug 26.

PMID:
19707805
28.

The wheat omega-gliadin genes: structure and EST analysis.

Anderson OD, Gu YQ, Kong X, Lazo GR, Wu J.

Funct Integr Genomics. 2009 Aug;9(3):397-410. doi: 10.1007/s10142-009-0122-2. Epub 2009 Apr 15.

29.

Plant and crop databases.

Matthews DE, Lazo GR, Anderson OD.

Methods Mol Biol. 2009;513:243-62. doi: 10.1007/978-1-59745-427-8_13. Review.

PMID:
19347656
30.

Structural characterization of Brachypodium genome and its syntenic relationship with rice and wheat.

Huo N, Vogel JP, Lazo GR, You FM, Ma Y, McMahon S, Dvorak J, Anderson OD, Luo MC, Gu YQ.

Plant Mol Biol. 2009 May;70(1-2):47-61. doi: 10.1007/s11103-009-9456-3. Epub 2009 Jan 29.

PMID:
19184460
31.

The complete chloroplast genome sequence of Brachypodium distachyon: sequence comparison and phylogenetic analysis of eight grass plastomes.

Bortiri E, Coleman-Derr D, Lazo GR, Anderson OD, Gu YQ.

BMC Res Notes. 2008 Jul 31;1:61. doi: 10.1186/1756-0500-1-61.

32.

Comparative proteomic and transcriptional profiling of a bread wheat cultivar and its derived transgenic line overexpressing a low molecular weight glutenin subunit gene in the endosperm.

Scossa F, Laudencia-Chingcuanco D, Anderson OD, Vensel WH, Lafiandra D, D'Ovidio R, Masci S.

Proteomics. 2008 Jul;8(14):2948-66. doi: 10.1002/pmic.200700861.

PMID:
18655071
33.

BatchPrimer3: a high throughput web application for PCR and sequencing primer design.

You FM, Huo N, Gu YQ, Luo MC, Ma Y, Hane D, Lazo GR, Dvorak J, Anderson OD.

BMC Bioinformatics. 2008 May 29;9:253. doi: 10.1186/1471-2105-9-253.

34.

The nuclear genome of Brachypodium distachyon: analysis of BAC end sequences.

Huo N, Lazo GR, Vogel JP, You FM, Ma Y, Hayden DM, Coleman-Derr D, Hill TA, Dvorak J, Anderson OD, Luo MC, Gu YQ.

Funct Integr Genomics. 2008 May;8(2):135-47. Epub 2007 Nov 6.

PMID:
17985162
35.

Rapid evolution and complex structural organization in genomic regions harboring multiple prolamin genes in the polyploid wheat genome.

Gao S, Gu YQ, Wu J, Coleman-Derr D, Huo N, Crossman C, Jia J, Zuo Q, Ren Z, Anderson OD, Kong X.

Plant Mol Biol. 2007 Sep;65(1-2):189-203. Epub 2007 Jul 16.

PMID:
17629796
36.

Transcriptional profiling of wheat caryopsis development using cDNA microarrays.

Laudencia-Chingcuanco DL, Stamova BS, You FM, Lazo GR, Beckles DM, Anderson OD.

Plant Mol Biol. 2007 Mar;63(5):651-68. Epub 2007 Jan 9.

PMID:
17211515
37.

Analysis of the wheat endosperm transcriptome.

Laudencia-Chingcuanco DL, Stamova BS, Lazo GR, Cui X, Anderson OD.

J Appl Genet. 2006;47(4):287-302.

PMID:
17132893
38.

Construction and characterization of two BAC libraries from Brachypodium distachyon, a new model for grass genomics.

Huo N, Gu YQ, Lazo GR, Vogel JP, Coleman-Derr D, Luo MC, Thilmony R, Garvin DF, Anderson OD.

Genome. 2006 Sep;49(9):1099-108.

PMID:
17110990
39.

Types and rates of sequence evolution at the high-molecular-weight glutenin locus in hexaploid wheat and its ancestral genomes.

Gu YQ, Salse J, Coleman-Derr D, Dupin A, Crossman C, Lazo GR, Huo N, Belcram H, Ravel C, Charmet G, Charles M, Anderson OD, Chalhoub B.

Genetics. 2006 Nov;174(3):1493-504. Epub 2006 Oct 8.

40.

GenoProfiler: batch processing of high-throughput capillary fingerprinting data.

You FM, Luo MC, Gu YQ, Lazo GR, Deal K, Dvorak J, Anderson OD.

Bioinformatics. 2007 Jan 15;23(2):240-2. Epub 2006 Oct 2.

PMID:
17018534
41.

Use of a large-scale Triticeae expressed sequence tag resource to reveal gene expression profiles in hexaploid wheat (Triticum aestivum L.).

Chao S, Lazo GR, You F, Crossman CC, Hummel DD, Lui N, Laudencia-Chingcuanco D, Anderson JA, Close TJ, Dubcovsky J, Gill BS, Gill KS, Gustafson JP, Kianian SF, Lapitan NL, Nguyen HT, Sorrells ME, McGuire PE, Qualset CO, Anderson OD.

Genome. 2006 May;49(5):531-44.

42.

GrainGenes 2.0. an improved resource for the small-grains community.

Carollo V, Matthews DE, Lazo GR, Blake TK, Hummel DD, Lui N, Hane DL, Anderson OD.

Plant Physiol. 2005 Oct;139(2):643-51.

43.

Hybsweeper: a resource for detecting high-density plate gridding coordinates.

Lazo GR, Lui N, Gu YQ, Kong X, Coleman-Derr D, Anderson OD.

Biotechniques. 2005 Sep;39(3):320, 322, 324. No abstract available.

44.

Atomic force microscopy of a hybrid high-molecular-weight glutenin subunit from a transgenic hexaploid wheat.

McIntire TM, Lew EJ, Adalsteins AE, Blechl A, Anderson OD, Brant DA, Kasarda DD.

Biopolymers. 2005 Jun 5;78(2):53-61.

PMID:
15706633
45.

A chromosome bin map of 16,000 expressed sequence tag loci and distribution of genes among the three genomes of polyploid wheat.

Qi LL, Echalier B, Chao S, Lazo GR, Butler GE, Anderson OD, Akhunov ED, Dvorák J, Linkiewicz AM, Ratnasiri A, Dubcovsky J, Bermudez-Kandianis CE, Greene RA, Kantety R, La Rota CM, Munkvold JD, Sorrells SF, Sorrells ME, Dilbirligi M, Sidhu D, Erayman M, Randhawa HS, Sandhu D, Bondareva SN, Gill KS, Mahmoud AA, Ma XF, Miftahudin, Gustafson JP, Conley EJ, Nduati V, Gonzalez-Hernandez JL, Anderson JA, Peng JH, Lapitan NL, Hossain KG, Kalavacharla V, Kianian SF, Pathan MS, Zhang DS, Nguyen HT, Choi DW, Fenton RD, Close TJ, McGuire PE, Qualset CO, Gill BS.

Genetics. 2004 Oct;168(2):701-12.

46.

A chromosome bin map of 2148 expressed sequence tag loci of wheat homoeologous group 7.

Hossain KG, Kalavacharla V, Lazo GR, Hegstad J, Wentz MJ, Kianian PM, Simons K, Gehlhar S, Rust JL, Syamala RR, Obeori K, Bhamidimarri S, Karunadharma P, Chao S, Anderson OD, Qi LL, Echalier B, Gill BS, Linkiewicz AM, Ratnasiri A, Dubcovsky J, Akhunov ED, Dvorák J, Miftahudin, Ross K, Gustafson JP, Radhawa HS, Dilbirligi M, Gill KS, Peng JH, Lapitan NL, Greene RA, Bermudez-Kandianis CE, Sorrells ME, Feril O, Pathan MS, Nguyen HT, Gonzalez-Hernandez JL, Conley EJ, Anderson JA, Choi DW, Fenton D, Close TJ, McGuire PE, Qualset CO, Kianian SF.

Genetics. 2004 Oct;168(2):687-99.

47.

Deletion mapping of homoeologous group 6-specific wheat expressed sequence tags.

Randhawa HS, Dilbirligi M, Sidhu D, Erayman M, Sandhu D, Bondareva S, Chao S, Lazo GR, Anderson OD, Miftahudin, Gustafson JP, Echalier B, Qi LL, Gill BS, Akhunov ED, Dvorák J, Linkiewicz AM, Ratnasiri A, Dubcovsky J, Bermudez-Kandianis CE, Greene RA, Sorrells ME, Conley EJ, Anderson JA, Peng JH, Lapitan NL, Hossain KG, Kalavacharla V, Kianian SF, Pathan MS, Nguyen HT, Endo TR, Close TJ, McGuire PE, Qualset CO, Gill KS.

Genetics. 2004 Oct;168(2):677-86.

48.

A 2500-locus bin map of wheat homoeologous group 5 provides insights on gene distribution and colinearity with rice.

Linkiewicz AM, Qi LL, Gill BS, Ratnasiri A, Echalier B, Chao S, Lazo GR, Hummel DD, Anderson OD, Akhunov ED, Dvorák J, Pathan MS, Nguyen HT, Peng JH, Lapitan NL, Miftahudin, Gustafson JP, La Rota CM, Sorrells ME, Hossain KG, Kalavacharla V, Kianian SF, Sandhu D, Bondareva SN, Gill KS, Conley EJ, Anderson JA, Fenton RD, Close TJ, McGuire PE, Qualset CO, Dubcovsky J.

Genetics. 2004 Oct;168(2):665-76.

49.

Analysis of expressed sequence tag loci on wheat chromosome group 4.

Miftahudin, Ross K, Ma XF, Mahmoud AA, Layton J, Milla MA, Chikmawati T, Ramalingam J, Feril O, Pathan MS, Momirovic GS, Kim S, Chema K, Fang P, Haule L, Struxness H, Birkes J, Yaghoubian C, Skinner R, McAllister J, Nguyen V, Qi LL, Echalier B, Gill BS, Linkiewicz AM, Dubcovsky J, Akhunov ED, Dvorák J, Dilbirligi M, Gill KS, Peng JH, Lapitan NL, Bermudez-Kandianis CE, Sorrells ME, Hossain KG, Kalavacharla V, Kianian SF, Lazo GR, Chao S, Anderson OD, Gonzalez-Hernandez J, Conley EJ, Anderson JA, Choi DW, Fenton RD, Close TJ, McGuire PE, Qualset CO, Nguyen HT, Gustafson JP.

Genetics. 2004 Oct;168(2):651-63.

50.

Group 3 chromosome bin maps of wheat and their relationship to rice chromosome 1.

Munkvold JD, Greene RA, Bermudez-Kandianis CE, La Rota CM, Edwards H, Sorrells SF, Dake T, Benscher D, Kantety R, Linkiewicz AM, Dubcovsky J, Akhunov ED, Dvorák J, Miftahudin, Gustafson JP, Pathan MS, Nguyen HT, Matthews DE, Chao S, Lazo GR, Hummel DD, Anderson OD, Anderson JA, Gonzalez-Hernandez JL, Peng JH, Lapitan N, Qi LL, Echalier B, Gill BS, Hossain KG, Kalavacharla V, Kianian SF, Sandhu D, Erayman M, Gill KS, McGuire PE, Qualset CO, Sorrells ME.

Genetics. 2004 Oct;168(2):639-50.

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