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Items: 18

1.

A Guide to Carrying Out a Phylogenomic Target Sequence Capture Project.

Andermann T, Torres Jiménez MF, Matos-Maraví P, Batista R, Blanco-Pastor JL, Gustafsson ALS, Kistler L, Liberal IM, Oxelman B, Bacon CD, Antonelli A.

Front Genet. 2020 Feb 21;10:1407. doi: 10.3389/fgene.2019.01407. eCollection 2019. Review.

2.

Phylogenomics and biogeography of the world's thrushes (Aves, Turdus): new evidence for a more parsimonious evolutionary history.

Batista R, Olsson U, Andermann T, Aleixo A, Ribas CC, Antonelli A.

Proc Biol Sci. 2020 Jan 29;287(1919):20192400. doi: 10.1098/rspb.2019.2400. Epub 2020 Jan 22.

PMID:
31964299
3.

Microbiota modification in hematology: still at the bench or ready for the bedside?

Severyn CJ, Brewster R, Andermann TM.

Hematology Am Soc Hematol Educ Program. 2019 Dec 6;2019(1):303-314. doi: 10.1182/hematology.2019000365.

PMID:
31808861
4.

Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly.

Kang JB, Siranosian BA, Moss EL, Banaei N, Andermann TM, Bhatt AS.

BMC Bioinformatics. 2019 Dec 2;20(Suppl 16):585. doi: 10.1186/s12859-019-3073-1.

5.

Microbiota modification in hematology: still at the bench or ready for the bedside?

Severyn CJ, Brewster R, Andermann TM.

Blood Adv. 2019 Nov 12;3(21):3461-3472. doi: 10.1182/bloodadvances.2019000365.

6.

Diversity of resistance mechanisms in carbapenem-resistant Enterobacteriaceae at a health care system in Northern California, from 2013 to 2016.

Senchyna F, Gaur RL, Sandlund J, Truong C, Tremintin G, Kültz D, Gomez CA, Tamburini FB, Andermann T, Bhatt A, Tickler I, Watz N, Budvytiene I, Shi G, Tenover FC, Banaei N.

Diagn Microbiol Infect Dis. 2019 Mar;93(3):250-257. doi: 10.1016/j.diagmicrobio.2018.10.004. Epub 2018 Oct 13.

PMID:
30482638
7.

Precision identification of diverse bloodstream pathogens in the gut microbiome.

Tamburini FB, Andermann TM, Tkachenko E, Senchyna F, Banaei N, Bhatt AS.

Nat Med. 2018 Dec;24(12):1809-1814. doi: 10.1038/s41591-018-0202-8. Epub 2018 Oct 15.

8.

Conceptual and empirical advances in Neotropical biodiversity research.

Antonelli A, Ariza M, Albert J, Andermann T, Azevedo J, Bacon C, Faurby S, Guedes T, Hoorn C, Lohmann LG, Matos-Maraví P, Ritter CD, Sanmartín I, Silvestro D, Tejedor M, Ter Steege H, Tuomisto H, Werneck FP, Zizka A, Edwards SV.

PeerJ. 2018 Oct 4;6:e5644. doi: 10.7717/peerj.5644. eCollection 2018.

9.

SECAPR-a bioinformatics pipeline for the rapid and user-friendly processing of targeted enriched Illumina sequences, from raw reads to alignments.

Andermann T, Cano Á, Zizka A, Bacon C, Antonelli A.

PeerJ. 2018 Jul 13;6:e5175. doi: 10.7717/peerj.5175. eCollection 2018.

10.

Allele Phasing Greatly Improves the Phylogenetic Utility of Ultraconserved Elements.

Andermann T, Fernandes AM, Olsson U, Töpel M, Pfeil B, Oxelman B, Aleixo A, Faircloth BC, Antonelli A.

Syst Biol. 2019 Jan 1;68(1):32-46. doi: 10.1093/sysbio/syy039.

11.

The Microbiome and Hematopoietic Cell Transplantation: Past, Present, and Future.

Andermann TM, Peled JU, Ho C, Reddy P, Riches M, Storb R, Teshima T, van den Brink MRM, Alousi A, Balderman S, Chiusolo P, Clark WB, Holler E, Howard A, Kean LS, Koh AY, McCarthy PL, McCarty JM, Mohty M, Nakamura R, Rezvani K, Segal BH, Shaw BE, Shpall EJ, Sung AD, Weber D, Whangbo J, Wingard JR, Wood WA, Perales MA, Jenq RR, Bhatt AS; Blood and Marrow Transplant Clinical Trials Network.

Biol Blood Marrow Transplant. 2018 Jul;24(7):1322-1340. doi: 10.1016/j.bbmt.2018.02.009. Epub 2018 Feb 19. Review. No abstract available.

12.

Estimating Age-Dependent Extinction: Contrasting Evidence from Fossils and Phylogenies.

Hagen O, Andermann T, Quental TB, Antonelli A, Silvestro D.

Syst Biol. 2018 May 1;67(3):458-474. doi: 10.1093/sysbio/syx082.

13.

Antibiotics in Hematopoietic Cell Transplantation: Adversaries or Allies?

Andermann TM, Bhatt AS.

Biol Blood Marrow Transplant. 2016 Jun;22(6):972-974. doi: 10.1016/j.bbmt.2016.04.002. Epub 2016 Apr 14. No abstract available.

14.

The Helicobacter pylori CZB Cytoplasmic Chemoreceptor TlpD Forms an Autonomous Polar Chemotaxis Signaling Complex That Mediates a Tactic Response to Oxidative Stress.

Collins KD, Andermann TM, Draper J, Sanders L, Williams SM, Araghi C, Ottemann KM.

J Bacteriol. 2016 May 13;198(11):1563-75. doi: 10.1128/JB.00071-16. Print 2016 Jun 1.

15.

Microbiota Manipulation With Prebiotics and Probiotics in Patients Undergoing Stem Cell Transplantation.

Andermann TM, Rezvani A, Bhatt AS.

Curr Hematol Malig Rep. 2016 Feb;11(1):19-28. doi: 10.1007/s11899-016-0302-9. Review.

16.

A supplemented soft agar chemotaxis assay demonstrates the Helicobacter pylori chemotactic response to zinc and nickel.

Sanders L, Andermann TM, Ottemann KM.

Microbiology. 2013 Jan;159(Pt 1):46-57. doi: 10.1099/mic.0.062877-0. Epub 2012 Nov 8.

17.

Helicobacter pylori chemotaxis modulates inflammation and bacterium-gastric epithelium interactions in infected mice.

Williams SM, Chen YT, Andermann TM, Carter JE, McGee DJ, Ottemann KM.

Infect Immun. 2007 Aug;75(8):3747-57. Epub 2007 May 21.

18.

Two predicted chemoreceptors of Helicobacter pylori promote stomach infection.

Andermann TM, Chen YT, Ottemann KM.

Infect Immun. 2002 Oct;70(10):5877-81.

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