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Items: 29

1.

Genome mining of biosynthetic and chemotherapeutic gene clusters in Streptomyces bacteria.

Belknap KC, Park CJ, Barth BM, Andam CP.

Sci Rep. 2020 Feb 6;10(1):2003. doi: 10.1038/s41598-020-58904-9.

2.

Distinct but Intertwined Evolutionary Histories of Multiple Salmonella enterica Subspecies.

Park CJ, Andam CP.

mSystems. 2020 Jan 14;5(1). pii: e00515-19. doi: 10.1128/mSystems.00515-19.

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5.

Within-Species Genomic Variation and Variable Patterns of Recombination in the Tetracycline Producer Streptomyces rimosus.

Park CJ, Andam CP.

Front Microbiol. 2019 Mar 21;10:552. doi: 10.3389/fmicb.2019.00552. eCollection 2019.

6.

Genomic epidemiology of meticillin-resistant Staphylococcus aureus ST22 widespread in communities of the Gaza Strip, 2009.

Chang Q, Abuelaish I, Biber A, Jaber H, Callendrello A, Andam CP, Regev-Yochay G, Hanage WP, On Behalf Of The Picr Study Group.

Euro Surveill. 2018 Aug;23(34). doi: 10.2807/1560-7917.ES.2018.23.34.1700592.

7.

Therapeutic effect of Northern Labrador tea extracts for acute myeloid leukemia.

McGill CM, Tomco PL, Ondrasik RM, Belknap KC, Dwyer GK, Quinlan DJ, Kircher TA, Andam CP, Brown TJ, Claxton DF, Barth BM.

Phytother Res. 2018 Aug;32(8):1636-1641. doi: 10.1002/ptr.6091. Epub 2018 Apr 27.

PMID:
29701283
8.

Population genetic structure, antibiotic resistance, capsule switching and evolution of invasive pneumococci before conjugate vaccination in Malawi.

Chaguza C, Cornick JE, Andam CP, Gladstone RA, Alaerts M, Musicha P, Peno C, Bar-Zeev N, Kamng'ona AW, Kiran AM, Msefula CL, McGee L, Breiman RF, Kadioglu A, French N, Heyderman RS, Hanage WP, Bentley SD, Everett DB.

Vaccine. 2017 Aug 16;35(35 Pt B):4594-4602. doi: 10.1016/j.vaccine.2017.07.009. Epub 2017 Jul 12.

9.

Penicillin Resistance of Nonvaccine Type Pneumococcus before and after PCV13 Introduction, United States.

Andam CP, Worby CJ, Gierke R, McGee L, Pilishvili T, Hanage WP.

Emerg Infect Dis. 2017 Jun;23(6):1012-1015. doi: 10.3201/eid2306.161331.

10.

Genome Surfing As Driver of Microbial Genomic Diversity.

Choudoir MJ, Panke-Buisse K, Andam CP, Buckley DH.

Trends Microbiol. 2017 Aug;25(8):624-636. doi: 10.1016/j.tim.2017.02.006. Epub 2017 Mar 7. Review.

PMID:
28283403
11.

Efficient Inference of Recent and Ancestral Recombination within Bacterial Populations.

Mostowy R, Croucher NJ, Andam CP, Corander J, Hanage WP, Marttinen P.

Mol Biol Evol. 2017 May 1;34(5):1167-1182. doi: 10.1093/molbev/msx066.

12.

Genomic Epidemiology of Penicillin-Nonsusceptible Pneumococci with Nonvaccine Serotypes Causing Invasive Disease in the United States.

Andam CP, Mitchell PK, Callendrello A, Chang Q, Corander J, Chaguza C, McGee L, Beall BW, Hanage WP.

J Clin Microbiol. 2017 Apr;55(4):1104-1115. doi: 10.1128/JCM.02453-16. Epub 2017 Jan 18.

13.

Substitutions of short heterologous DNA segments of intragenomic or extragenomic origins produce clustered genomic polymorphisms.

Harms K, Lunnan A, Hülter N, Mourier T, Vinner L, Andam CP, Marttinen P, Fridholm H, Hansen AJ, Hanage WP, Nielsen KM, Willerslev E, Johnsen PJ.

Proc Natl Acad Sci U S A. 2016 Dec 27;113(52):15066-15071. doi: 10.1073/pnas.1615819114. Epub 2016 Dec 12.

14.

Understanding pneumococcal serotype 1 biology through population genomic analysis.

Chaguza C, Cornick JE, Harris SR, Andam CP, Bricio-Moreno L, Yang M, Yalcin F, Ousmane S, Govindpersad S, Senghore M, Ebruke C, Du Plessis M, Kiran AM, Pluschke G, Sigauque B, McGee L, Klugman KP, Turner P, Corander J, Parkhill J, Collard JM, Antonio M, von Gottberg A, Heyderman RS, French N, Kadioglu A, Hanage WP, Everett DB, Bentley SD; PAGe Consortium.

BMC Infect Dis. 2016 Nov 8;16(1):649.

15.

Recombination in Streptococcus pneumoniae Lineages Increase with Carriage Duration and Size of the Polysaccharide Capsule.

Chaguza C, Andam CP, Harris SR, Cornick JE, Yang M, Bricio-Moreno L, Kamng'ona AW, Parkhill J, French N, Heyderman RS, Kadioglu A, Everett DB, Bentley SD, Hanage WP.

mBio. 2016 Sep 27;7(5). pii: e01053-16. doi: 10.1128/mBio.01053-16.

16.

Microbial Genomics of Ancient Plagues and Outbreaks.

Andam CP, Worby CJ, Chang Q, Campana MG.

Trends Microbiol. 2016 Dec;24(12):978-990. doi: 10.1016/j.tim.2016.08.004. Epub 2016 Sep 8. Review.

PMID:
27618404
17.

A Latitudinal Diversity Gradient in Terrestrial Bacteria of the Genus Streptomyces.

Andam CP, Doroghazi JR, Campbell AN, Kelly PJ, Choudoir MJ, Buckley DH.

mBio. 2016 Apr 12;7(2):e02200-15. doi: 10.1128/mBio.02200-15.

18.

Contributions of ancestral inter-species recombination to the genetic diversity of extant Streptomyces lineages.

Andam CP, Choudoir MJ, Vinh Nguyen A, Sol Park H, Buckley DH.

ISME J. 2016 Jul;10(7):1731-41. doi: 10.1038/ismej.2015.230. Epub 2016 Feb 5.

19.

Ancient horizontal gene transfer and the last common ancestors.

Fournier GP, Andam CP, Gogarten JP.

BMC Evol Biol. 2015 Apr 22;15:70. doi: 10.1186/s12862-015-0350-0.

20.

Mechanisms of genome evolution of Streptococcus.

Andam CP, Hanage WP.

Infect Genet Evol. 2015 Jul;33:334-42. doi: 10.1016/j.meegid.2014.11.007. Epub 2014 Nov 13. Review.

21.

Ancient origin of the divergent forms of leucyl-tRNA synthetases in the Halobacteriales.

Andam CP, Harlow TJ, Papke RT, Gogarten JP.

BMC Evol Biol. 2012 Jun 13;12:85. doi: 10.1186/1471-2148-12-85.

22.

Molecular evolution of aminoacyl tRNA synthetase proteins in the early history of life.

Fournier GP, Andam CP, Alm EJ, Gogarten JP.

Orig Life Evol Biosph. 2011 Dec;41(6):621-32. doi: 10.1007/s11084-011-9261-2. Epub 2011 Dec 27. Erratum in: Orig Life Evol Biosph. 2012 Aug;42(4):377.

PMID:
22200905
23.

Biased gene transfer and its implications for the concept of lineage.

Andam CP, Gogarten JP.

Biol Direct. 2011 Sep 23;6:47. doi: 10.1186/1745-6150-6-47.

24.

A rooted net of life.

Williams D, Fournier GP, Lapierre P, Swithers KS, Green AG, Andam CP, Gogarten JP.

Biol Direct. 2011 Sep 21;6:45. doi: 10.1186/1745-6150-6-45.

25.

Biased gene transfer in microbial evolution.

Andam CP, Gogarten JP.

Nat Rev Microbiol. 2011 Jun 13;9(7):543-55. doi: 10.1038/nrmicro2593. Review.

PMID:
21666709
26.

Multilevel populations and the evolution of antibiotic resistance through horizontal gene transfer.

Andam CP, Fournier GP, Gogarten JP.

FEMS Microbiol Rev. 2011 Sep;35(5):756-67. doi: 10.1111/j.1574-6976.2011.00274.x. Epub 2011 May 20. Review.

27.

Biased gene transfer mimics patterns created through shared ancestry.

Andam CP, Williams D, Gogarten JP.

Proc Natl Acad Sci U S A. 2010 Jun 8;107(23):10679-84. doi: 10.1073/pnas.1001418107. Epub 2010 May 21.

28.

Novel alphaproteobacterial root nodule symbiont associated with Lupinus texensis.

Andam CP, Parker MA.

Appl Environ Microbiol. 2007 Sep;73(17):5687-91. Epub 2007 Jul 6.

29.

Monophyly of nodA and nifH genes across Texan and Costa Rican populations of Cupriavidus nodule symbionts.

Andam CP, Mondo SJ, Parker MA.

Appl Environ Microbiol. 2007 Jul;73(14):4686-90. Epub 2007 May 25.

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