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Items: 47

1.

Clades of huge phages from across Earth's ecosystems.

Al-Shayeb B, Sachdeva R, Chen LX, Ward F, Munk P, Devoto A, Castelle CJ, Olm MR, Bouma-Gregson K, Amano Y, He C, Méheust R, Brooks B, Thomas A, Lavy A, Matheus-Carnevali P, Sun C, Goltsman DSA, Borton MA, Sharrar A, Jaffe AL, Nelson TC, Kantor R, Keren R, Lane KR, Farag IF, Lei S, Finstad K, Amundson R, Anantharaman K, Zhou J, Probst AJ, Power ME, Tringe SG, Li WJ, Wrighton K, Harrison S, Morowitz M, Relman DA, Doudna JA, Lehours AC, Warren L, Cate JHD, Santini JM, Banfield JF.

Nature. 2020 Feb 12. doi: 10.1038/s41586-020-2007-4. [Epub ahead of print]

PMID:
32051592
2.

Mediterranean grassland soil C-N compound turnover is dependent on rainfall and depth, and is mediated by genomically divergent microorganisms.

Diamond S, Andeer PF, Li Z, Crits-Christoph A, Burstein D, Anantharaman K, Lane KR, Thomas BC, Pan C, Northen TR, Banfield JF.

Nat Microbiol. 2019 Aug;4(8):1356-1367. doi: 10.1038/s41564-019-0449-y. Epub 2019 May 20.

3.

Author Correction: Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria.

Matheus Carnevali PB, Schulz F, Castelle CJ, Kantor RS, Shih PM, Sharon I, Santini JM, Olm MR, Amano Y, Thomas BC, Anantharaman K, Burstein D, Becraft ED, Stepanauskas R, Woyke T, Banfield JF.

Nat Commun. 2019 Mar 26;10(1):1451. doi: 10.1038/s41467-019-09423-3.

4.

Impacts of microbial assemblage and environmental conditions on the distribution of anatoxin-a producing cyanobacteria within a river network.

Bouma-Gregson K, Olm MR, Probst AJ, Anantharaman K, Power ME, Banfield JF.

ISME J. 2019 Jun;13(6):1618-1634. doi: 10.1038/s41396-019-0374-3. Epub 2019 Feb 26.

5.

Megaphages infect Prevotella and variants are widespread in gut microbiomes.

Devoto AE, Santini JM, Olm MR, Anantharaman K, Munk P, Tung J, Archie EA, Turnbaugh PJ, Seed KD, Blekhman R, Aarestrup FM, Thomas BC, Banfield JF.

Nat Microbiol. 2019 Apr;4(4):693-700. doi: 10.1038/s41564-018-0338-9. Epub 2019 Jan 28.

6.

Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria.

Matheus Carnevali PB, Schulz F, Castelle CJ, Kantor RS, Shih PM, Sharon I, Santini JM, Olm MR, Amano Y, Thomas BC, Anantharaman K, Burstein D, Becraft ED, Stepanauskas R, Woyke T, Banfield JF.

Nat Commun. 2019 Jan 28;10(1):463. doi: 10.1038/s41467-018-08246-y. Erratum in: Nat Commun. 2019 Mar 26;10(1):1451.

7.

Freshwater carbon and nutrient cycles revealed through reconstructed population genomes.

Linz AM, He S, Stevens SLR, Anantharaman K, Rohwer RR, Malmstrom RR, Bertilsson S, McMahon KD.

PeerJ. 2018 Dec 10;6:e6075. doi: 10.7717/peerj.6075. eCollection 2018.

8.

Biosynthetic capacity, metabolic variety and unusual biology in the CPR and DPANN radiations.

Castelle CJ, Brown CT, Anantharaman K, Probst AJ, Huang RH, Banfield JF.

Nat Rev Microbiol. 2018 Oct;16(10):629-645. doi: 10.1038/s41579-018-0076-2. Review.

9.

Evidence for Increased Magnetic Resonance Imaging Signal Intensity and Morphological Changes in the Brachial Plexus and Median Nerves of Patients With Chronic Arm and Neck Pain Following Whiplash Injury.

Greening J, Anantharaman K, Young R, Dilley A.

J Orthop Sports Phys Ther. 2018 Jul;48(7):523-532. doi: 10.2519/jospt.2018.7875. Epub 2018 Apr 24.

PMID:
29690828
10.

Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle.

Anantharaman K, Hausmann B, Jungbluth SP, Kantor RS, Lavy A, Warren LA, Rappé MS, Pester M, Loy A, Thomas BC, Banfield JF.

ISME J. 2018 Jun;12(7):1715-1728. doi: 10.1038/s41396-018-0078-0. Epub 2018 Feb 21.

11.

Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface.

Probst AJ, Ladd B, Jarett JK, Geller-McGrath DE, Sieber CMK, Emerson JB, Anantharaman K, Thomas BC, Malmstrom RR, Stieglmeier M, Klingl A, Woyke T, Ryan MC, Banfield JF.

Nat Microbiol. 2018 Mar;3(3):328-336. doi: 10.1038/s41564-017-0098-y. Epub 2018 Jan 29.

12.

Rice Paddy Nitrospirae Carry and Express Genes Related to Sulfate Respiration: Proposal of the New Genus "Candidatus Sulfobium".

Zecchin S, Mueller RC, Seifert J, Stingl U, Anantharaman K, von Bergen M, Cavalca L, Pester M.

Appl Environ Microbiol. 2018 Feb 14;84(5). pii: e02224-17. doi: 10.1128/AEM.02224-17. Print 2018 Mar 1.

13.

Complete 4.55-Megabase-Pair Genome of "Candidatus Fluviicola riflensis," Curated from Short-Read Metagenomic Sequences.

Banfield JF, Anantharaman K, Williams KH, Thomas BC.

Genome Announc. 2017 Nov 22;5(47). pii: e01299-17. doi: 10.1128/genomeA.01299-17.

14.

Potential for microbial H2 and metal transformations associated with novel bacteria and archaea in deep terrestrial subsurface sediments.

Hernsdorf AW, Amano Y, Miyakawa K, Ise K, Suzuki Y, Anantharaman K, Probst A, Burstein D, Thomas BC, Banfield JF.

ISME J. 2017 Aug;11(8):1915-1929. doi: 10.1038/ismej.2017.39. Epub 2017 Mar 28.

15.

Genome-Resolved Meta-Omics Ties Microbial Dynamics to Process Performance in Biotechnology for Thiocyanate Degradation.

Kantor RS, Huddy RJ, Iyer R, Thomas BC, Brown CT, Anantharaman K, Tringe S, Hettich RL, Harrison ST, Banfield JF.

Environ Sci Technol. 2017 Mar 7;51(5):2944-2953. doi: 10.1021/acs.est.6b04477. Epub 2017 Feb 13.

PMID:
28139919
16.

Asgard archaea illuminate the origin of eukaryotic cellular complexity.

Zaremba-Niedzwiedzka K, Caceres EF, Saw JH, Bäckström D, Juzokaite L, Vancaester E, Seitz KW, Anantharaman K, Starnawski P, Kjeldsen KU, Stott MB, Nunoura T, Banfield JF, Schramm A, Baker BJ, Spang A, Ettema TJ.

Nature. 2017 Jan 19;541(7637):353-358. doi: 10.1038/nature21031. Epub 2017 Jan 11.

17.

New CRISPR-Cas systems from uncultivated microbes.

Burstein D, Harrington LB, Strutt SC, Probst AJ, Anantharaman K, Thomas BC, Doudna JA, Banfield JF.

Nature. 2017 Feb 9;542(7640):237-241. doi: 10.1038/nature21059. Epub 2016 Dec 22.

18.

Diverse manganese(II)-oxidizing bacteria are prevalent in drinking water systems.

Marcus DN, Pinto A, Anantharaman K, Ruberg SA, Kramer EL, Raskin L, Dick GJ.

Environ Microbiol Rep. 2017 Apr;9(2):120-128. doi: 10.1111/1758-2229.12508. Epub 2017 Jan 25.

19.

Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system.

Anantharaman K, Brown CT, Hug LA, Sharon I, Castelle CJ, Probst AJ, Thomas BC, Singh A, Wilkins MJ, Karaoz U, Brodie EL, Williams KH, Hubbard SS, Banfield JF.

Nat Commun. 2016 Oct 24;7:13219. doi: 10.1038/ncomms13219.

20.

A new view of the tree of life.

Hug LA, Baker BJ, Anantharaman K, Brown CT, Probst AJ, Castelle CJ, Butterfield CN, Hernsdorf AW, Amano Y, Ise K, Suzuki Y, Dudek N, Relman DA, Finstad KM, Amundson R, Thomas BC, Banfield JF.

Nat Microbiol. 2016 Apr 11;1:16048. doi: 10.1038/nmicrobiol.2016.48.

PMID:
27572647
21.

Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO2 concentrations.

Probst AJ, Castelle CJ, Singh A, Brown CT, Anantharaman K, Sharon I, Hug LA, Burstein D, Emerson JB, Thomas BC, Banfield JF.

Environ Microbiol. 2017 Feb;19(2):459-474. doi: 10.1111/1462-2920.13362. Epub 2016 Jul 7.

22.

Analysis of five complete genome sequences for members of the class Peribacteria in the recently recognized Peregrinibacteria bacterial phylum.

Anantharaman K, Brown CT, Burstein D, Castelle CJ, Probst AJ, Thomas BC, Williams KH, Banfield JF.

PeerJ. 2016 Jan 28;4:e1607. doi: 10.7717/peerj.1607. eCollection 2016.

23.

Major bacterial lineages are essentially devoid of CRISPR-Cas viral defence systems.

Burstein D, Sun CL, Brown CT, Sharon I, Anantharaman K, Probst AJ, Thomas BC, Banfield JF.

Nat Commun. 2016 Feb 3;7:10613. doi: 10.1038/ncomms10613.

24.

Functional metagenomic selection of ribulose 1, 5-bisphosphate carboxylase/oxygenase from uncultivated bacteria.

Varaljay VA, Satagopan S, North JA, Witte B, Dourado MN, Anantharaman K, Arbing MA, Hoeft McCann S, Oremland RS, Banfield JF, Wrighton KC, Tabita FR.

Environ Microbiol. 2016 Apr;18(4):1187-99. doi: 10.1111/1462-2920.13138. Epub 2016 Jan 21.

25.

Genomic and transcriptomic evidence for scavenging of diverse organic compounds by widespread deep-sea archaea.

Li M, Baker BJ, Anantharaman K, Jain S, Breier JA, Dick GJ.

Nat Commun. 2015 Nov 17;6:8933. doi: 10.1038/ncomms9933.

26.

Metagenomic resolution of microbial functions in deep-sea hydrothermal plumes across the Eastern Lau Spreading Center.

Anantharaman K, Breier JA, Dick GJ.

ISME J. 2016 Jan;10(1):225-39. doi: 10.1038/ismej.2015.81. Epub 2015 Jun 5.

27.

Predicting the response of the deep-ocean microbiome to geochemical perturbations by hydrothermal vents.

Reed DC, Breier JA, Jiang H, Anantharaman K, Klausmeier CA, Toner BM, Hancock C, Speer K, Thurnherr AM, Dick GJ.

ISME J. 2015 Aug;9(8):1857-69. doi: 10.1038/ismej.2015.4. Epub 2015 Feb 6.

28.

Spatially resolved sampling reveals dynamic microbial communities in rising hydrothermal plumes across a back-arc basin.

Sheik CS, Anantharaman K, Breier JA, Sylvan JB, Edwards KJ, Dick GJ.

ISME J. 2015 Jun;9(6):1434-45. doi: 10.1038/ismej.2014.228. Epub 2014 Dec 9.

29.

Sulfur oxidation genes in diverse deep-sea viruses.

Anantharaman K, Duhaime MB, Breier JA, Wendt KA, Toner BM, Dick GJ.

Science. 2014 May 16;344(6185):757-60. doi: 10.1126/science.1252229. Epub 2014 May 1.

30.

Genomic and transcriptomic analyses of the facultative methanotroph Methylocystis sp. strain SB2 grown on methane or ethanol.

Vorobev A, Jagadevan S, Jain S, Anantharaman K, Dick GJ, Vuilleumier S, Semrau JD.

Appl Environ Microbiol. 2014 May;80(10):3044-52. doi: 10.1128/AEM.00218-14. Epub 2014 Mar 7.

31.

pH impact on reductive dechlorination of cis-dichloroethylene by Fe precipitates: an X-ray absorption spectroscopy study.

Jeong HY, Anantharaman K, Hyun SP, Son M, Hayes KF.

Water Res. 2013 Nov 1;47(17):6639-49. doi: 10.1016/j.watres.2013.08.035. Epub 2013 Sep 11.

PMID:
24074816
32.

The microbiology of deep-sea hydrothermal vent plumes: ecological and biogeographic linkages to seafloor and water column habitats.

Dick GJ, Anantharaman K, Baker BJ, Li M, Reed DC, Sheik CS.

Front Microbiol. 2013 May 21;4:124. doi: 10.3389/fmicb.2013.00124. eCollection 2013.

33.

Evidence for hydrogen oxidation and metabolic plasticity in widespread deep-sea sulfur-oxidizing bacteria.

Anantharaman K, Breier JA, Sheik CS, Dick GJ.

Proc Natl Acad Sci U S A. 2013 Jan 2;110(1):330-5. doi: 10.1073/pnas.1215340110. Epub 2012 Dec 20.

34.

The metatranscriptome of a deep-sea hydrothermal plume is dominated by water column methanotrophs and lithotrophs.

Lesniewski RA, Jain S, Anantharaman K, Schloss PD, Dick GJ.

ISME J. 2012 Dec;6(12):2257-68. doi: 10.1038/ismej.2012.63. Epub 2012 Jun 14.

35.

Abiotic reductive dechlorination of cis-dichloroethylene by Fe species formed during iron- or sulfate-reduction.

Jeong HY, Anantharaman K, Han YS, Hayes KF.

Environ Sci Technol. 2011 Jun 15;45(12):5186-94. doi: 10.1021/es104387w. Epub 2011 May 19.

PMID:
21595430
36.
37.

Glycogen storage capacity and de novo lipogenesis during massive carbohydrate overfeeding in man.

Acheson KJ, Schutz Y, Bessard T, Anantharaman K, Flatt JP, Jéquier E.

Am J Clin Nutr. 1988 Aug;48(2):240-7.

PMID:
3165600
38.

Behavioural responses of rats on high- and low-protein diets, as a function of period of weaning.

Enslen M, Decarli B, Anantharaman K.

Int J Vitam Nutr Res Suppl. 1986;29:99-108. No abstract available.

PMID:
3084679
39.

Energy/protein interrelation in experimental food restriction.

Anantharaman K.

Experientia Suppl. 1983;44:157-70.

PMID:
6580175
40.

Caffeine and coffee: their influence on metabolic rate and substrate utilization in normal weight and obese individuals.

Acheson KJ, Zahorska-Markiewicz B, Pittet P, Anantharaman K, Jéquier E.

Am J Clin Nutr. 1980 May;33(5):989-97.

PMID:
7369170
41.

Biochemical changes in a 100 km run: free amino acids, urea, and creatinine.

Décombaz J, Reinhardt P, Anantharaman K, von Glutz G, Poortmans JR.

Eur J Appl Physiol Occup Physiol. 1979 Apr 12;41(1):61-72.

PMID:
446472
42.

Effects of heat processing on the nutritional value of groundnut products. II. Individual amino acids.

Anantharaman K, Carpenter KJ.

J Sci Food Agric. 1971 Aug;22(8):412-8. No abstract available.

PMID:
5131530
43.

Availability for rats of the lysine in field beans (Vicia faba L.).

Anantharaman K.

Proc Nutr Soc. 1970 May;29(1):Suppl:5A-6A. No abstract available.

PMID:
5476579
44.

Effects of heat processing on the nutritional value of groundnut products. I. Protein quality of groundnut cotyledons for rats.

Anantharaman K, Carpenter KJ.

J Sci Food Agric. 1969 Dec;20(12):703-8. No abstract available.

PMID:
5373720
45.

Trypsin-inhibitory and growth-depressing activities of groundnut skins(testa).

Anantharaman K.

Proc Nutr Soc. 1969 Sep;28(2):46A-47A. No abstract available.

PMID:
5353339
46.

The nutritional value of poor proteins fed at high levels. II. Species differences.

Anantharaman K, Carpenter KJ, Nesheim MC.

Br J Nutr. 1968 May;22(2):199-205. No abstract available.

PMID:
5676947
47.

The nutritional value of poor proteins fed at high levels. I. The growth of rats.

Carpenter KJ, Anantharaman K.

Br J Nutr. 1968 May;22(2):183-97. No abstract available.

PMID:
5673540

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