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Items: 18

1.

A database of tissue-specific rhythmically expressed human genes has potential applications in circadian medicine.

Ruben MD, Wu G, Smith DF, Schmidt RE, Francey LJ, Lee YY, Anafi RC, Hogenesch JB.

Sci Transl Med. 2018 Sep 12;10(458). pii: eaat8806. doi: 10.1126/scitranslmed.aat8806.

PMID:
30209245
2.

Time-Dependent Molecular Responses Differ between Gastric Bypass and Dieting but Are Conserved Across Species.

Ben-Zvi D, Meoli L, Abidi WM, Nestoridi E, Panciotti C, Castillo E, Pizarro P, Shirley E, Gourash WF, Thompson CC, Munoz R, Clish CB, Anafi RC, Courcoulas AP, Stylopoulos N.

Cell Metab. 2018 Aug 7;28(2):310-323.e6. doi: 10.1016/j.cmet.2018.06.004. Epub 2018 Jun 28.

PMID:
30043755
3.

Clock Regulation of Metabolites Reveals Coupling between Transcription and Metabolism.

Krishnaiah SY, Wu G, Altman BJ, Growe J, Rhoades SD, Coldren F, Venkataraman A, Olarerin-George AO, Francey LJ, Mukherjee S, Girish S, Selby CP, Cal S, Er U, Sianati B, Sengupta A, Anafi RC, Kavakli IH, Sancar A, Baur JA, Dang CV, Hogenesch JB, Weljie AM.

Cell Metab. 2017 May 2;25(5):1206. doi: 10.1016/j.cmet.2017.04.023. No abstract available.

4.

CYCLOPS reveals human transcriptional rhythms in health and disease.

Anafi RC, Francey LJ, Hogenesch JB, Kim J.

Proc Natl Acad Sci U S A. 2017 May 16;114(20):5312-5317. doi: 10.1073/pnas.1619320114. Epub 2017 Apr 24.

5.

Clock Regulation of Metabolites Reveals Coupling between Transcription and Metabolism.

Krishnaiah SY, Wu G, Altman BJ, Growe J, Rhoades SD, Coldren F, Venkataraman A, Olarerin-George AO, Francey LJ, Mukherjee S, Girish S, Selby CP, Cal S, Er U, Sianati B, Sengupta A, Anafi RC, Kavakli IH, Sancar A, Baur JA, Dang CV, Hogenesch JB, Weljie AM.

Cell Metab. 2017 Apr 4;25(4):961-974.e4. doi: 10.1016/j.cmet.2017.03.019. Erratum in: Cell Metab. 2017 May 2;25(5):1206.

6.

MetaCycle: an integrated R package to evaluate periodicity in large scale data.

Wu G, Anafi RC, Hughes ME, Kornacker K, Hogenesch JB.

Bioinformatics. 2016 Nov 1;32(21):3351-3353. Epub 2016 Jul 4.

7.

Discovering Biology in Periodic Data through Phase Set Enrichment Analysis (PSEA).

Zhang R, Podtelezhnikov AA, Hogenesch JB, Anafi RC.

J Biol Rhythms. 2016 Jun;31(3):244-57. doi: 10.1177/0748730416631895. Epub 2016 Mar 8.

PMID:
26955841
8.

Blood-gene expression reveals reduced circadian rhythmicity in individuals resistant to sleep deprivation.

Arnardottir ES, Nikonova EV, Shockley KR, Podtelezhnikov AA, Anafi RC, Tanis KQ, Maislin G, Stone DJ, Renger JJ, Winrow CJ, Pack AI.

Sleep. 2014 Oct 1;37(10):1589-600. doi: 10.5665/sleep.4064.

9.

Machine learning helps identify CHRONO as a circadian clock component.

Anafi RC, Lee Y, Sato TK, Venkataraman A, Ramanathan C, Kavakli IH, Hughes ME, Baggs JE, Growe J, Liu AC, Kim J, Hogenesch JB.

PLoS Biol. 2014 Apr 15;12(4):e1001840. doi: 10.1371/journal.pbio.1001840. eCollection 2014 Apr.

10.

Design and analysis of large-scale biological rhythm studies: a comparison of algorithms for detecting periodic signals in biological data.

Deckard A, Anafi RC, Hogenesch JB, Haase SB, Harer J.

Bioinformatics. 2013 Dec 15;29(24):3174-80. doi: 10.1093/bioinformatics/btt541. Epub 2013 Sep 20.

11.

Sleep is not just for the brain: transcriptional responses to sleep in peripheral tissues.

Anafi RC, Pellegrino R, Shockley KR, Romer M, Tufik S, Pack AI.

BMC Genomics. 2013 May 30;14:362. doi: 10.1186/1471-2164-14-362.

12.

Balancing robustness against the dangers of multiple attractors in a Hopfield-type model of biological attractors.

Anafi RC, Bates JH.

PLoS One. 2010 Dec 22;5(12):e14413. doi: 10.1371/journal.pone.0014413.

13.

Effects of central airway shunting on the mechanical impedance of the mouse lung.

Schwartz BL, Anafi RC, Aliyeva M, Thompson-Figueroa JA, Allen GB, Lundblad LK, Bates JH.

Ann Biomed Eng. 2011 Jan;39(1):497-507. doi: 10.1007/s10439-010-0123-2. Epub 2010 Jul 17.

PMID:
20640513
14.

Transient oscillatory force-length behavior of activated airway smooth muscle.

Bates JH, Bullimore SR, Politi AZ, Sneyd J, Anafi RC, Lauzon AM.

Am J Physiol Lung Cell Mol Physiol. 2009 Aug;297(2):L362-72. doi: 10.1152/ajplung.00095.2009. Epub 2009 Jun 12.

15.

Impedance, gas mixing, and bimodal ventilation in constricted lungs.

Anafi RC, Beck KC, Wilson TA.

J Appl Physiol (1985). 2003 Mar;94(3):1003-11.

16.

Empirical model for dynamic force-length behavior of airway smooth muscle.

Anafi RC, Wilson TA.

J Appl Physiol (1985). 2002 Feb;92(2):455-60.

17.

Airway stability and heterogeneity in the constricted lung.

Anafi RC, Wilson TA.

J Appl Physiol (1985). 2001 Sep;91(3):1185-92.

18.

Mechanics of edematous lungs.

Wilson TA, Anafi RC, Hubmayr RD.

J Appl Physiol (1985). 2001 Jun;90(6):2088-93.

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