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Best matches for Ané C[au]:

PhyloNetworks: A Package for Phylogenetic Networks. Solís-Lemus C et al. Mol Biol Evol. (2017)

Statistical evidence for common ancestry: Application to primates. Baum DA et al. Evolution. (2016)

Evaluating and Characterizing Ancient Whole-Genome Duplications in Plants with Gene Count Data. Tiley GP et al. Genome Biol Evol. (2016)

Search results

Items: 42

1.

A Malvaceae mystery: A mallow maelstrom of genome multiplications and maybe misleading methods?

Conover JL, Karimi N, Stenz N, Ané C, Grover CE, Skema C, Tate JA, Wolff K, Logan SA, Wendel JF, Baum DA.

J Integr Plant Biol. 2019 Jan;61(1):12-31. doi: 10.1111/jipb.12746.

PMID:
30474311
2.

Monocot plastid phylogenomics, timeline, net rates of species diversification, the power of multi-gene analyses, and a functional model for the origin of monocots.

Givnish TJ, Zuluaga A, Spalink D, Soto Gomez M, Lam VKY, Saarela JM, Sass C, Iles WJD, de Sousa DJL, Leebens-Mack J, Chris Pires J, Zomlefer WB, Gandolfo MA, Davis JI, Stevenson DW, dePamphilis C, Specht CD, Graham SW, Barrett CF, Ané C.

Am J Bot. 2018 Nov;105(11):1888-1910. doi: 10.1002/ajb2.1178. Epub 2018 Oct 24.

PMID:
30368769
3.

Phylogenetic Comparative Methods on Phylogenetic Networks with Reticulations.

Bastide P, Solís-Lemus C, Kriebel R, William Sparks K, Ané C.

Syst Biol. 2018 Sep 1;67(5):800-820. doi: 10.1093/sysbio/syy033.

PMID:
29701821
4.

Inference of Adaptive Shifts for Multivariate Correlated Traits.

Bastide P, Ané C, Robin S, Mariadassou M.

Syst Biol. 2018 Jul 1;67(4):662-680. doi: 10.1093/sysbio/syy005.

PMID:
29385556
5.

PhyloNetworks: A Package for Phylogenetic Networks.

Solís-Lemus C, Bastide P, Ané C.

Mol Biol Evol. 2017 Dec 1;34(12):3292-3298. doi: 10.1093/molbev/msx235.

PMID:
28961984
6.

Phase transition on the convergence rate of parameter estimation under an Ornstein-Uhlenbeck diffusion on a tree.

Ané C, Ho LS, Roch S.

J Math Biol. 2017 Jan;74(1-2):355-385. doi: 10.1007/s00285-016-1029-x. Epub 2016 May 30.

PMID:
27241727
7.

Inconsistency of Species Tree Methods under Gene Flow.

Solís-Lemus C, Yang M, Ané C.

Syst Biol. 2016 Sep;65(5):843-51. doi: 10.1093/sysbio/syw030. Epub 2016 May 5.

PMID:
27151419
8.

Statistical evidence for common ancestry: Application to primates.

Baum DA, Ané C, Larget B, Solís-Lemus C, Ho LS, Boone P, Drummond CP, Bontrager M, Hunter SJ, Saucier W.

Evolution. 2016 Jun;70(6):1354-63. doi: 10.1111/evo.12934. Epub 2016 May 30.

PMID:
27139421
9.

Evaluating and Characterizing Ancient Whole-Genome Duplications in Plants with Gene Count Data.

Tiley GP, Ané C, Burleigh JG.

Genome Biol Evol. 2016 Apr 11;8(4):1023-37. doi: 10.1093/gbe/evw058.

10.

Inferring Phylogenetic Networks with Maximum Pseudolikelihood under Incomplete Lineage Sorting.

Solís-Lemus C, Ané C.

PLoS Genet. 2016 Mar 7;12(3):e1005896. doi: 10.1371/journal.pgen.1005896. eCollection 2016 Mar.

11.

Exploring Tree-Like and Non-Tree-Like Patterns Using Genome Sequences: An Example Using the Inbreeding Plant Species Arabidopsis thaliana (L.) Heynh.

Stenz NW, Larget B, Baum DA, Ané C.

Syst Biol. 2015 Sep;64(5):809-23. doi: 10.1093/sysbio/syv039. Epub 2015 Jun 27.

PMID:
26117705
12.

Bayesian species delimitation combining multiple genes and traits in a unified framework.

Solís-Lemus C, Knowles LL, Ané C.

Evolution. 2015 Feb;69(2):492-507. doi: 10.1111/evo.12582. Epub 2015 Jan 16.

13.

A linear-time algorithm for Gaussian and non-Gaussian trait evolution models.

Ho Ls, Ané C.

Syst Biol. 2014 May;63(3):397-408. doi: 10.1093/sysbio/syu005. Epub 2014 Feb 4.

PMID:
24500037
14.

Computing the joint distribution of tree shape and tree distance for gene tree inference and recombination detection.

Chung Y, Perna NT, Ané C.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Sep-Oct;10(5):1263-74. doi: 10.1109/TCBB.2013.109.

PMID:
24384712
15.

Detecting and locating whole genome duplications on a phylogeny: a probabilistic approach.

Rabier CE, Ta T, Ané C.

Mol Biol Evol. 2014 Mar;31(3):750-62. doi: 10.1093/molbev/mst263. Epub 2013 Dec 19.

16.

Using HSV-1 genome phylogenetics to track past human migrations.

Kolb AW, Ané C, Brandt CR.

PLoS One. 2013 Oct 16;8(10):e76267. doi: 10.1371/journal.pone.0076267. eCollection 2013.

17.

The evolution of hybrid incompatibilities along a phylogeny.

Wang RJ, Ané C, Payseur BA.

Evolution. 2013 Oct;67(10):2905-22. doi: 10.1111/evo.12173. Epub 2013 Jun 20.

18.

Locating evolutionary precursors on a phylogenetic tree.

Marazzi B, Ané C, Simon MF, Delgado-Salinas A, Luckow M, Sanderson MJ.

Evolution. 2012 Dec;66(12):3918-30. doi: 10.1111/j.1558-5646.2012.01720.x. Epub 2012 Aug 6.

PMID:
23206146
19.

Growth and survival parameter estimates and relation to RpoS levels in serotype O157:H7 and non-O157 Shiga toxin-producing Escherichia coli.

Mand TD, Döpfer D, Ingham B, Ané C, Kaspar CW.

J Appl Microbiol. 2013 Jan;114(1):242-55. doi: 10.1111/jam.12021. Epub 2012 Oct 19.

20.

Mapping quantitative trait loci onto a phylogenetic tree.

Broman KW, Kim S, Sen S, Ané C, Payseur BA.

Genetics. 2012 Sep;192(1):267-79. doi: 10.1534/genetics.112.142448. Epub 2012 Jun 28.

21.

Single copy nuclear gene analysis of polyploidy in wild potatoes (Solanum section Petota).

Cai D, Rodríguez F, Teng Y, Ané C, Bonierbale M, Mueller LA, Spooner DM.

BMC Evol Biol. 2012 May 24;12:70. doi: 10.1186/1471-2148-12-70.

22.

Comparison of bulk-tank standard plate count and somatic cell count for Wisconsin dairy farms in three size categories.

Ingham SC, Hu Y, Ané C.

J Dairy Sci. 2011 Aug;94(8):4237-41. doi: 10.3168/jds.2011-4310. Erratum in: J Dairy Sci. 2011 Oct;94(10):5247.

23.

Traumatic intrapericardial diaphragmatic hernia.

Joyeux F, Canaud L, Berthet JP, Ané CM.

Eur J Cardiothorac Surg. 2011 Jul;40(1):e69. doi: 10.1016/j.ejcts.2011.02.016. Epub 2011 Mar 21. No abstract available.

PMID:
21420875
24.

Comparing two Bayesian methods for gene tree/species tree reconstruction: simulations with incomplete lineage sorting and horizontal gene transfer.

Chung Y, Ané C.

Syst Biol. 2011 May;60(3):261-75. doi: 10.1093/sysbio/syr003. Epub 2011 Mar 2.

PMID:
21368324
25.

Detecting phylogenetic breakpoints and discordance from genome-wide alignments for species tree reconstruction.

Ané C.

Genome Biol Evol. 2011;3:246-58. doi: 10.1093/gbe/evr013. Epub 2011 Feb 28.

26.

The iPlant Collaborative: Cyberinfrastructure for Plant Biology.

Goff SA, Vaughn M, McKay S, Lyons E, Stapleton AE, Gessler D, Matasci N, Wang L, Hanlon M, Lenards A, Muir A, Merchant N, Lowry S, Mock S, Helmke M, Kubach A, Narro M, Hopkins N, Micklos D, Hilgert U, Gonzales M, Jordan C, Skidmore E, Dooley R, Cazes J, McLay R, Lu Z, Pasternak S, Koesterke L, Piel WH, Grene R, Noutsos C, Gendler K, Feng X, Tang C, Lent M, Kim SJ, Kvilekval K, Manjunath BS, Tannen V, Stamatakis A, Sanderson M, Welch SM, Cranston KA, Soltis P, Soltis D, O'Meara B, Ane C, Brutnell T, Kleibenstein DJ, White JW, Leebens-Mack J, Donoghue MJ, Spalding EP, Vision TJ, Myers CR, Lowenthal D, Enquist BJ, Boyle B, Akoglu A, Andrews G, Ram S, Ware D, Stein L, Stanzione D.

Front Plant Sci. 2011 Jul 25;2:34. doi: 10.3389/fpls.2011.00034. eCollection 2011.

27.

BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis.

Larget BR, Kotha SK, Dewey CN, Ané C.

Bioinformatics. 2010 Nov 15;26(22):2910-1. doi: 10.1093/bioinformatics/btq539. Epub 2010 Sep 21.

PMID:
20861028
28.

Predicting growth-no growth of Listeria monocytogenes on vacuum-packaged ready-to-eat meats.

Ingham SC, Borneman DL, Ané C, Ingham BH.

J Food Prot. 2010 Apr;73(4):708-14.

PMID:
20377960
29.

Fine-scale phylogenetic discordance across the house mouse genome.

White MA, Ané C, Dewey CN, Larget BR, Payseur BA.

PLoS Genet. 2009 Nov;5(11):e1000729. doi: 10.1371/journal.pgen.1000729. Epub 2009 Nov 20.

30.

Do potatoes and tomatoes have a single evolutionary history, and what proportion of the genome supports this history?

Rodriguez F, Wu F, Ané C, Tanksley S, Spooner DM.

BMC Evol Biol. 2009 Aug 7;9:191. doi: 10.1186/1471-2148-9-191.

32.

Predicting growth-no growth of Staphylococcus aureus on vacuum-packaged ready-to-eat meats.

Borneman DL, Ingham SC, Ane C.

J Food Prot. 2009 Mar;72(3):539-48.

PMID:
19343942
33.

A Bayesian perspective on a non-parsimonious parsimony model.

Huelsenbeck JP, Ané C, Larget B, Ronquist F.

Syst Biol. 2008 Jun;57(3):406-19. doi: 10.1080/10635150802166046.

PMID:
18570035
34.

Proteomic analysis of the winter-protected phenotype of hibernating ground squirrel intestine.

Martin SL, Epperson LE, Rose JC, Kurtz CC, Ané C, Carey HV.

Am J Physiol Regul Integr Comp Physiol. 2008 Jul;295(1):R316-28. doi: 10.1152/ajpregu.00418.2007. Epub 2008 Apr 23.

35.

The role of pollinator shifts in the floral diversification of Iochroma (Solanaceae).

Smith SD, Ané C, Baum DA.

Evolution. 2008 Apr;62(4):793-806. doi: 10.1111/j.1558-5646.2008.00327.x. Epub 2008 Jan 14. Erratum in: Evolution. 2009 Dec;63(12):3277.

PMID:
18208567
36.

Bayesian estimation of concordance among gene trees.

Ané C, Larget B, Baum DA, Smith SD, Rokas A.

Mol Biol Evol. 2007 Feb;24(2):412-26. Epub 2006 Nov 9. Erratum in: Mol Biol Evol. 2007 Jul;24(7):1575.

PMID:
17095535
37.

Testing for different rates of continuous trait evolution using likelihood.

O'Meara BC, Ané C, Sanderson MJ, Wainwright PC.

Evolution. 2006 May;60(5):922-33.

PMID:
16817533
39.

Covarion structure in plastid genome evolution: a new statistical test.

Ané C, Burleigh JG, McMahon MM, Sanderson MJ.

Mol Biol Evol. 2005 Apr;22(4):914-24. Epub 2004 Dec 29.

PMID:
15625184
40.

Prospects for building the tree of life from large sequence databases.

Driskell AC, Ané C, Burleigh JG, McMahon MM, O'meara BC, Sanderson MJ.

Science. 2004 Nov 12;306(5699):1172-4.

41.

Population pharmacokinetics/pharmacodynamics relationships of an anticancer drug.

Ané C, Concordet D.

Stat Med. 2003 Mar 30;22(6):833-46.

PMID:
12627403
42.

Organization of alpha-globin genes in Hb Hasharon (alpha 47 asp replaced by his) carriers.

Giglioni B, Comi P, Taramelli R, Ottolenghi S, Ciocca-Vasino MA, Anè C, Cappellini MD, Gianni AM.

Blood. 1980 Dec;56(6):1145-9.

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