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Expert specification of the ACMG/AMP variant interpretation guidelines for genetic hearing loss.

Oza AM, DiStefano MT, Hemphill SE, Cushman BJ, Grant AR, Siegert RK, Shen J, Chapin A, Boczek NJ, Schimmenti LA, Murry JB, Hasadsri L, Nara K, Kenna M, Booth KT, Azaiez H, Griffith A, Avraham KB, Kremer H, Rehm HL, Amr SS, Abou Tayoun AN; ClinGen Hearing Loss Clinical Domain Working Group.

Hum Mutat. 2018 Nov;39(11):1593-1613. doi: 10.1002/humu.23630.


The eMERGE genotype set of 83,717 subjects imputed to ~40 million variants genome wide and association with the herpes zoster medical record phenotype.

Stanaway IB, Hall TO, Rosenthal EA, Palmer M, Naranbhai V, Knevel R, Namjou-Khales B, Carroll RJ, Kiryluk K, Gordon AS, Linder J, Howell KM, Mapes BM, Lin FTJ, Joo YY, Hayes MG, Gharavi AG, Pendergrass SA, Ritchie MD, de Andrade M, Croteau-Chonka DC, Raychaudhuri S, Weiss ST, Lebo M, Amr SS, Carrell D, Larson EB, Chute CG, Rasmussen-Torvik LJ, Roy-Puckelwartz MJ, Sleiman P, Hakonarson H, Li R, Karlson EW, Peterson JF, Kullo IJ, Chisholm R, Denny JC, Jarvik GP; eMERGE Network, Crosslin DR.

Genet Epidemiol. 2018 Oct 8. doi: 10.1002/gepi.22167. [Epub ahead of print]


Gallbladder cancer in Eastern Province of Saudi Arabia: A retrospective cohort study.

Aldossary MY, Alayed AA, Amr SS, Alqahtani S, Alnahawi M, Alqahtani MS.

Ann Med Surg (Lond). 2018 Sep 26;35:117-123. doi: 10.1016/j.amsu.2018.09.020. eCollection 2018 Nov.


Primary squamous cell carcinoma of the gallbladder: Report of a rare neoplasm from the Eastern Province of Saudi Arabia.

Aldossary MY, Alayed AA, Amr S, Alqahtani MS.

Int J Surg Case Rep. 2018 Aug 30;51:186-189. doi: 10.1016/j.ijscr.2018.08.048. [Epub ahead of print]


Racial and Ethnic Differences in the Relationship Between Aspirin Use and Non-Small Cell Lung Cancer Risk and Survival.

Erickson P, Gardner LD, Loffredo CA, St George DM, Bowman ED, Deepak J, Mitchell KA, Meaney CL, Langenberg P, Bernat DH, Amr S, Ryan BM.

Cancer Epidemiol Biomarkers Prev. 2018 Aug 31. pii: cebp.0366.2018. doi: 10.1158/1055-9965.EPI-18-0366. [Epub ahead of print]


Curating Clinically Relevant Transcripts for the Interpretation of Sequence Variants.

DiStefano MT, Hemphill SE, Cushman BJ, Bowser MJ, Hynes E, Grant AR, Siegert RK, Oza AM, Gonzalez MA, Amr SS, Rehm HL, Abou Tayoun AN.

J Mol Diagn. 2018 Aug 8. pii: S1525-1578(18)30099-0. doi: 10.1016/j.jmoldx.2018.06.005. [Epub ahead of print]


Mediastinal Ectopic Pancreas with Abundant Endocrine Cells Coexisting with Mediastinal Cyst and Thymic Hyperplasia.

Snak Y, Dwianingsih EK, Sumpono ASB, Panji R, Rahman A, Ghozali A, Amr SS.

Case Rep Pathol. 2018 May 27;2018:8270516. doi: 10.1155/2018/8270516. eCollection 2018.


Comparison between radiofrequency ablation and chemical neurolysis of thoracic splanchnic nerves for the management of abdominal cancer pain, randomized trial.

Amr SA, Reyad RM, Othman AH, Mohamad MF, Mostafa MM, Alieldin NH, Hamed FA.

Eur J Pain. 2018 Jul 5. doi: 10.1002/ejp.1274. [Epub ahead of print]


Performance of combined persulfate/aluminum sulfate for landfill leachate treatment.

Abu Amr SS, Alkarkhi AFM, Alslaibi TM, Abujazar MSS.

Data Brief. 2018 May 24;19:951-958. doi: 10.1016/j.dib.2018.05.111. eCollection 2018 Aug.


Evaluation and comparison the performance of titanium and zirconium(IV) tetrachloride in textile wastewater treatment.

Aziz HA, Razak MHA, Rahim MZA, Kamar WISW, Abu Amr SS, Hussain S, Van Leeuwen J.

Data Brief. 2018 Mar 28;18:920-927. doi: 10.1016/j.dib.2018.03.113. eCollection 2018 Jun.


Associations between history of chronic lung disease and non-small cell lung carcinoma in Maryland: variations by sex and race.

Gardner LD, Loffredo PhD CA, Langenberg P, George DMS, Deepak J, Harris CC, Amr S.

Ann Epidemiol. 2018 Aug;28(8):543-548. doi: 10.1016/j.annepidem.2018.04.012. Epub 2018 May 7.


Urinary Bladder Cancer in Egypt: Are There Gender Differences in Its Histopathological Presentation?

Kyritsi F, Loffredo CA, Zheng YL, Philips G, Amr S.

Adv Urol. 2018 Mar 13;2018:3453808. doi: 10.1155/2018/3453808. eCollection 2018.


Analysis of intragenic USH2A copy number variation unveils broad spectrum of unique and recurrent variants.

Austin-Tse CA, Mandelker DL, Oza AM, Mason-Suares H, Rehm HL, Amr SS.

Eur J Med Genet. 2018 Oct;61(10):621-626. doi: 10.1016/j.ejmg.2018.04.006. Epub 2018 Apr 12.


Allele-Specific Droplet Digital PCR Combined with a Next-Generation Sequencing-Based Algorithm for Diagnostic Copy Number Analysis in Genes with High Homology: Proof of Concept Using Stereocilin.

Amr SS, Murphy E, Duffy E, Niazi R, Balciuniene J, Luo M, Rehm HL, Abou Tayoun AN.

Clin Chem. 2018 Apr;64(4):705-714. doi: 10.1373/clinchem.2017.280685. Epub 2018 Jan 16.


Postmarket Safety Outcomes for New Molecular Entity (NME) Drugs Approved by the Food and Drug Administration Between 2002 and 2014.

Pinnow E, Amr S, Bentzen SM, Brajovic S, Hungerford L, St George DM, Dal Pan G.

Clin Pharmacol Ther. 2018 Aug;104(2):390-400. doi: 10.1002/cpt.944. Epub 2017 Dec 20.


Empirical comparison of reduced representation bisulfite sequencing and Infinium BeadChip reproducibility and coverage of DNA methylation in humans.

Carmona JJ, Accomando WP Jr, Binder AM, Hutchinson JN, Pantano L, Izzi B, Just AC, Lin X, Schwartz J, Vokonas PS, Amr SS, Baccarelli AA, Michels KB.

NPJ Genom Med. 2017 Apr 19;2:13. doi: 10.1038/s41525-017-0012-9. eCollection 2017.


Recurrent variants in OTOF are significant contributors to prelingual nonsydromic hearing loss in Saudi patients.

Almontashiri NAM, Alswaid A, Oza A, Al-Mazrou KA, Elrehim O, Tayoun AA, Rehm HL, Amr SS.

Genet Med. 2018 Apr;20(5):536-544. doi: 10.1038/gim.2017.143. Epub 2017 Oct 19.


Cutaneous Erythema at Scar Site of Modified Radical Mastectomy: An Unexpected Manifestation of Recurrent Carcinoma.

Nasralla AM, Al-Duhileb MA, Arini AJ, Amr SS.

Case Rep Surg. 2017;2017:6879626. doi: 10.1155/2017/6879626. Epub 2017 Aug 10.


Risk assessment of nitrate transport through subsurface layers and groundwater using experimental and modeling approach.

Alslaibi TM, Abunada Z, Abu Amr SS, Abustan I.

Environ Technol. 2018 Nov;39(21):2691-2702. doi: 10.1080/09593330.2017.1365936. Epub 2017 Sep 22.


Novel frameshift variant in the IDUA gene underlies Mucopolysaccharidoses type I in a consanguineous Yemeni pedigree.

Azab B, Dardas Z, Hamarsheh M, Alsalem M, Kilani Z, Kilani F, Awidi A, Jafar H, Amr S.

Mol Genet Metab Rep. 2017 Jun 9;12:76-79. doi: 10.1016/j.ymgmr.2017.06.001. eCollection 2017 Sep.


Electro persulphate oxidation for polishing of biologically treated palm oil mill effluent (POME).

Bashir MJK, Wei CJ, Aun NC, Abu Amr SS.

J Environ Manage. 2017 May 15;193:458-469. doi: 10.1016/j.jenvman.2017.02.031. Epub 2017 Mar 2.


Post-treatment of palm oil mill effluent (POME) using combined persulphate with hydrogen peroxide (S2O82-/H2O2) oxidation.

Lin CK, Bashir MJ, Abu Amr SS, Sim LC.

Water Sci Technol. 2016 Dec;74(11):2675-2682.


Radical resection and improvised surgical reconstruction for a rare malignant triton tumour of intercostal nerve in a patient with neurofibromatosis type 1.

Chaudhry IU, Cheema AI, Mutari H, Amr SS.

BMJ Case Rep. 2016 Dec 8;2016. pii: bcr2016217868. doi: 10.1136/bcr-2016-217868.


Evaluating photo-degradation of COD and TOC in petroleum refinery wastewater by using TiO2/ZnO photo-catalyst.

Aljuboury DA, Palaniandy P, Abdul Aziz HB, Feroz S, Abu Amr SS.

Water Sci Technol. 2016 Sep;74(6):1312-1325.


Characteristics of Men Who Report Persistent Sexual Symptoms After Finasteride Use for Hair Loss.

Basaria S, Jasuja R, Huang G, Wharton W, Pan H, Pencina K, Li Z, Travison TG, Bhawan J, Gonthier R, Labrie F, Dury AY, Serra C, Papazian A, O'Leary M, Amr S, Storer TW, Stern E, Bhasin S.

J Clin Endocrinol Metab. 2016 Dec;101(12):4669-4680. Epub 2016 Sep 23.


Using large sequencing data sets to refine intragenic disease regions and prioritize clinical variant interpretation.

Amr SS, Al Turki SH, Lebo M, Sarmady M, Rehm HL, Abou Tayoun AN.

Genet Med. 2017 May;19(5):496-504. doi: 10.1038/gim.2016.134. Epub 2016 Sep 22.


CD10 and CD138 can be expressed in giant cell tumor of bone: An immunohistochemical study.

Al-Abbadi MA, Al-Yousef MJ, Yousef MM, Sheikh SS, Almasri NM, Amr SS.

Avicenna J Med. 2016 Jul-Sep;6(3):69-74. doi: 10.4103/2231-0770.184063.


Malignant peripheral nerve sheath tumor with extensive osteosarcomatous and chondrosarcomatous differentiation: A case report.

Meshikhes AW, Duhaileb MA, Amr SS.

Int J Surg Case Rep. 2016;25:188-91. doi: 10.1016/j.ijscr.2016.06.041. Epub 2016 Jun 29.


Polishing of treated palm oil mill effluent (POME) from ponding system by electrocoagulation process.

Bashir MJ, Mau Han T, Jun Wei L, Choon Aun N, Abu Amr SS.

Water Sci Technol. 2016;73(11):2704-12. doi: 10.2166/wst.2016.123.


Associations between Depressive Symptoms and 30-day Hospital Readmission among Older Adults.

Berges IM, Amr S, Abraham DS, Cannon DL, Ostir GV.

J Depress Anxiety. 2015 Apr;4(2). pii: 185. Epub 2015 Apr 24.


Next generation sequencing-based copy number analysis reveals low prevalence of deletions and duplications in 46 genes associated with genetic cardiomyopathies.

Ceyhan-Birsoy O, Pugh TJ, Bowser MJ, Hynes E, Frisella AL, Mahanta LM, Lebo MS, Amr SS, Funke BH.

Mol Genet Genomic Med. 2015 Dec 16;4(2):143-51. doi: 10.1002/mgg3.187. eCollection 2016 Mar.


Nonoccupational exposure to agricultural work and risk of urinary bladder cancer among Egyptian women.

Jackson SS, St George DM, Loffredo CA, Amr S.

Arch Environ Occup Health. 2017 May 4;72(3):166-172. doi: 10.1080/19338244.2016.1169155. Epub 2016 Mar 30.


The Translational Genomics Core at Partners Personalized Medicine: Facilitating the Transition of Research towards Personalized Medicine.

Blau A, Brown A, Mahanta L, Amr SS.

J Pers Med. 2016 Feb 26;6(1). pii: E10. doi: 10.3390/jpm6010010.


HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay.

Sunshine S, Kirchner R, Amr SS, Mansur L, Shakhbatyan R, Kim M, Bosque A, Siliciano RF, Planelles V, Hofmann O, Ho Sui S, Li JZ.

J Virol. 2016 Apr 14;90(9):4511-4519. doi: 10.1128/JVI.01617-15. Print 2016 May.


Response Surface Optimization of Bioethanol Production from Sugarcane Molasses by Pichia veronae Strain HSC-22.

Hamouda HI, Nassar HN, Madian HR, Abu Amr SS, El-Gendy NSh.

Biotechnol Res Int. 2015;2015:905792. doi: 10.1155/2015/905792. Epub 2015 Dec 8.


Optimization of leachate treatment using persulfate/H2O2 based advanced oxidation process: case study: Deir El-Balah Landfill Site, Gaza Strip, Palestine.

Hilles AH, Abu Amr SS, Hussein RA, Arafa AI, El-Sebaie OD.

Water Sci Technol. 2016;73(1):102-12. doi: 10.2166/wst.2015.468.


Comparison Between the Effects of Intravenous Morphine, Tramadol, and Ketorolac on Stress and Immune Responses in Patients Undergoing Modified Radical Mastectomy.

Bakr MA, Amr SA, Mohamed SA, Hamed HB, Abd El-Rahman AM, Mostafa MA, El Sherif FA.

Clin J Pain. 2016 Oct;32(10):889-97. doi: 10.1097/AJP.0000000000000338.


VisCap: inference and visualization of germ-line copy-number variants from targeted clinical sequencing data.

Pugh TJ, Amr SS, Bowser MJ, Gowrisankar S, Hynes E, Mahanta LM, Rehm HL, Funke B, Lebo MS.

Genet Med. 2016 Jul;18(7):712-9. doi: 10.1038/gim.2015.156. Epub 2015 Dec 17.


Performance of combined sodium persulfate/H2O2 based advanced oxidation process in stabilized landfill leachate treatment.

Hilles AH, Abu Amr SS, Hussein RA, El-Sebaie OD, Arafa AI.

J Environ Manage. 2016 Jan 15;166:493-8. doi: 10.1016/j.jenvman.2015.10.051. Epub 2015 Nov 12.


Improving hearing loss gene testing: a systematic review of gene evidence toward more efficient next-generation sequencing-based diagnostic testing and interpretation.

Abou Tayoun AN, Al Turki SH, Oza AM, Bowser MJ, Hernandez AL, Funke BH, Rehm HL, Amr SS.

Genet Med. 2016 Jun;18(6):545-53. doi: 10.1038/gim.2015.141. Epub 2015 Nov 12. Review.


Histopathology of the Human Inner Ear in a Patient With Sensorineural Hearing Loss Caused by a Variant in DFNA5.

Nadol JB Jr, Handzel O, Amr S.

Otol Neurotol. 2015 Dec;36(10):1616-21. doi: 10.1097/MAO.0000000000000888.


Implementation of an Integrative Medicine Curriculum for Preventive Medicine Residents.

Chiaramonte DR, D'Adamo C, Amr S.

Am J Prev Med. 2015 Nov;49(5 Suppl 3):S249-56. doi: 10.1016/j.amepre.2015.07.018.


Integrative Medicine in Preventive Medicine Education: Implementation Analysis.

Burton D, Trask J, Sandvold I, Amr S, Chaudry SS, Debay M.

Am J Prev Med. 2015 Nov;49(5 Suppl 3):S241-8. doi: 10.1016/j.amepre.2015.07.026.


Viral transmission risk factors in an Egyptian population with high hepatitis C prevalence.

Mohlman MK, Saleh DA, Ezzat S, Abdel-Hamid M, Korba B, Shetty K, Amr S, Loffredo CA.

BMC Public Health. 2015 Oct 7;15:1030. doi: 10.1186/s12889-015-2369-y.


Targeted Droplet-Digital PCR as a Tool for Novel Deletion Discovery at the DFNB1 Locus.

Tayoun AN, Mason-Suares H, Frisella AL, Bowser M, Duffy E, Mahanta L, Funke B, Rehm HL, Amr SS.

Hum Mutat. 2016 Jan;37(1):119-26. doi: 10.1002/humu.22912. Epub 2015 Oct 29.


Preventing hepatocellular carcinoma in Egypt: results of a Pilot Health Education Intervention Study.

Saleh DA, Amr S, Jillson IA, Wang JH, Crowell N, Loffredo CA.

BMC Res Notes. 2015 Aug 29;8:384. doi: 10.1186/s13104-015-1351-1.


Effect of persulfate and persulfate/H₂O₂ on biodegradability of an anaerobic stabilized landfill leachate.

Hilles AH, Abu Amr SS, Hussein RA, Arafa AI, El-Sebaie OD.

Waste Manag. 2015 Oct;44:172-7. doi: 10.1016/j.wasman.2015.07.046. Epub 2015 Aug 3.


Manubrioclavicular and Manubriosternal Reconstruction After Radical Resection for Chondrosarcoma of Manubriosternum: A Modified Surgical Technique.

Chaudhry Iu, Alhajji Z, Aldulaijan F, Mutairi H, Amr SS.

Ann Thorac Surg. 2015 Jun;99(6):e137-9. doi: 10.1016/j.athoracsur.2015.02.119.


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