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CDK and MAPK Synergistically Regulate Signaling Dynamics via a Shared Multi-site Phosphorylation Region on the Scaffold Protein Ste5.

Repetto MV, Winters MJ, Bush A, Reiter W, Hollenstein DM, Ammerer G, Pryciak PM, Colman-Lerner A.

Mol Cell. 2018 Mar 15;69(6):938-952.e6. doi: 10.1016/j.molcel.2018.02.018.


Identifying protein kinase-specific effectors of the osmostress response in yeast.

Romanov N, Hollenstein DM, Janschitz M, Ammerer G, Anrather D, Reiter W.

Sci Signal. 2017 Mar 7;10(469). pii: eaag2435. doi: 10.1126/scisignal.aag2435.


The Late S-Phase Transcription Factor Hcm1 Is Regulated through Phosphorylation by the Cell Wall Integrity Checkpoint.

Negishi T, Veis J, Hollenstein D, Sekiya M, Ammerer G, Ohya Y.

Mol Cell Biol. 2016 Jan 4;36(6):941-53. doi: 10.1128/MCB.00952-15.


TORC1 and TORC2 work together to regulate ribosomal protein S6 phosphorylation in Saccharomyces cerevisiae.

Yerlikaya S, Meusburger M, Kumari R, Huber A, Anrather D, Costanzo M, Boone C, Ammerer G, Baranov PV, Loewith R.

Mol Biol Cell. 2016 Jan 15;27(2):397-409. doi: 10.1091/mbc.E15-08-0594. Epub 2015 Nov 18.


Sumoylation regulates EXO1 stability and processing of DNA damage.

Bologna S, Altmannova V, Valtorta E, Koenig C, Liberali P, Gentili C, Anrather D, Ammerer G, Pelkmans L, Krejci L, Ferrari S.

Cell Cycle. 2015 Aug 3;14(15):2439-50. doi: 10.1080/15384101.2015.1060381. Epub 2015 Jun 17.


Identification of Novel Proteins Co-Purifying with Cockayne Syndrome Group B (CSB) Reveals Potential Roles for CSB in RNA Metabolism and Chromatin Dynamics.

Nicolai S, Filippi S, Caputo M, Cipak L, Gregan J, Ammerer G, Frontini M, Willems D, Prantera G, Balajee AS, Proietti-De-Santis L.

PLoS One. 2015 Jun 1;10(6):e0128558. doi: 10.1371/journal.pone.0128558. eCollection 2015.


H3K4 monomethylation dictates nucleosome dynamics and chromatin remodeling at stress-responsive genes.

Nadal-Ribelles M, Mas G, Millán-Zambrano G, Solé C, Ammerer G, Chávez S, Posas F, de Nadal E.

Nucleic Acids Res. 2015 May 26;43(10):4937-49. doi: 10.1093/nar/gkv220. Epub 2015 Mar 26.


Msb2 is a Ste11 membrane concentrator required for full activation of the HOG pathway.

Zuzuarregui A, Li T, Friedmann C, Ammerer G, Alepuz P.

Biochim Biophys Acta. 2015 Jun;1849(6):722-30. doi: 10.1016/j.bbagrm.2015.02.001. Epub 2015 Feb 14.


An in vivo detection system for transient and low-abundant protein interactions and their kinetics in budding yeast.

Brezovich A, Schuschnig M, Ammerer G, Kraft C.

Yeast. 2015 Mar;32(3):355-65. doi: 10.1002/yea.3063. Epub 2015 Feb 10.


A versatile scaffold contributes to damage survival via sumoylation and nuclease interactions.

Sarangi P, Altmannova V, Holland C, Bartosova Z, Hao F, Anrather D, Ammerer G, Lee SE, Krejci L, Zhao X.

Cell Rep. 2014 Oct 9;9(1):143-152. doi: 10.1016/j.celrep.2014.08.054. Epub 2014 Sep 25.


Conserved features and major differences in the outer membrane protein composition of chlamydiae.

Aistleitner K, Anrather D, Schott T, Klose J, Bright M, Ammerer G, Horn M.

Environ Microbiol. 2015 Apr;17(4):1397-413. doi: 10.1111/1462-2920.12621. Epub 2014 Oct 22.


Hrr25 kinase promotes selective autophagy by phosphorylating the cargo receptor Atg19.

Pfaffenwimmer T, Reiter W, Brach T, Nogellova V, Papinski D, Schuschnig M, Abert C, Ammerer G, Martens S, Kraft C.

EMBO Rep. 2014 Aug;15(8):862-70. doi: 10.15252/embr.201438932. Epub 2014 Jun 26.


Early steps in autophagy depend on direct phosphorylation of Atg9 by the Atg1 kinase.

Papinski D, Schuschnig M, Reiter W, Wilhelm L, Barnes CA, Maiolica A, Hansmann I, Pfaffenwimmer T, Kijanska M, Stoffel I, Lee SS, Brezovich A, Lou JH, Turk BE, Aebersold R, Ammerer G, Peter M, Kraft C.

Mol Cell. 2014 Feb 6;53(3):471-83. doi: 10.1016/j.molcel.2013.12.011. Epub 2014 Jan 16. Erratum in: Mol Cell. 2014 Feb 6;53(3):515.


Genotoxic stress prevents Ndd1-dependent transcriptional activation of G2/M-specific genes in Saccharomyces cerevisiae.

Yelamanchi SK, Veis J, Anrather D, Klug H, Ammerer G.

Mol Cell Biol. 2014 Feb;34(4):711-24. doi: 10.1128/MCB.01090-13. Epub 2013 Dec 9.


MAPK Hog1 closes the S. cerevisiae glycerol channel Fps1 by phosphorylating and displacing its positive regulators.

Lee J, Reiter W, Dohnal I, Gregori C, Beese-Sims S, Kuchler K, Ammerer G, Levin DE.

Genes Dev. 2013 Dec 1;27(23):2590-601. doi: 10.1101/gad.229310.113.


Transcriptome and proteome quantification of a tumor model provides novel insights into post-transcriptional gene regulation.

Jüschke C, Dohnal I, Pichler P, Harzer H, Swart R, Ammerer G, Mechtler K, Knoblich JA.

Genome Biol. 2013 Nov 30;14(11):r133. doi: 10.1186/gb-2013-14-11-r133.


Quantitative phosphoproteomics reveals the role of protein arginine phosphorylation in the bacterial stress response.

Schmidt A, Trentini DB, Spiess S, Fuhrmann J, Ammerer G, Mechtler K, Clausen T.

Mol Cell Proteomics. 2014 Feb;13(2):537-50. doi: 10.1074/mcp.M113.032292. Epub 2013 Nov 20.


A reversible gene trap collection empowers haploid genetics in human cells.

Bürckstümmer T, Banning C, Hainzl P, Schobesberger R, Kerzendorfer C, Pauler FM, Chen D, Them N, Schischlik F, Rebsamen M, Smida M, Fece de la Cruz F, Lapao A, Liszt M, Eizinger B, Guenzl PM, Blomen VA, Konopka T, Gapp B, Parapatics K, Maier B, Stöckl J, Fischl W, Salic S, Taba Casari MR, Knapp S, Bennett KL, Bock C, Colinge J, Kralovics R, Ammerer G, Casari G, Brummelkamp TR, Superti-Furga G, Nijman SM.

Nat Methods. 2013 Oct;10(10):965-71. doi: 10.1038/nmeth.2609. Epub 2013 Aug 25.


The Hog1 stress-activated protein kinase targets nucleoporins to control mRNA export upon stress.

Regot S, de Nadal E, Rodríguez-Navarro S, González-Novo A, Pérez-Fernandez J, Gadal O, Seisenbacher G, Ammerer G, Posas F.

J Biol Chem. 2013 Jun 14;288(24):17384-98. doi: 10.1074/jbc.M112.444042. Epub 2013 May 3. Erratum in: J Biol Chem. 2015 Jan 23;290(4):2301.


Crosstalk between casein kinase II and Ste20-related kinase Nak1.

Cipak L, Gupta S, Rajovic I, Jin QW, Anrather D, Ammerer G, McCollum D, Gregan J.

Cell Cycle. 2013 Mar 15;12(6):884-8. doi: 10.4161/cc.24095. Epub 2013 Mar 5.


Yeast protein phosphatase 2A-Cdc55 regulates the transcriptional response to hyperosmolarity stress by regulating Msn2 and Msn4 chromatin recruitment.

Reiter W, Klopf E, De Wever V, Anrather D, Petryshyn A, Roetzer A, Niederacher G, Roitinger E, Dohnal I, Görner W, Mechtler K, Brocard C, Schüller C, Ammerer G.

Mol Cell Biol. 2013 Mar;33(5):1057-72. doi: 10.1128/MCB.00834-12. Epub 2012 Dec 28.


Studying the fragmentation behavior of peptides with arginine phosphorylation and its influence on phospho-site localization.

Schmidt A, Ammerer G, Mechtler K.

Proteomics. 2013 Mar;13(6):945-54. doi: 10.1002/pmic.201200240. Epub 2013 Feb 18.


Validation of regulated protein phosphorylation events in yeast by quantitative mass spectrometry analysis of purified proteins.

Reiter W, Anrather D, Dohnal I, Pichler P, Veis J, Grøtli M, Posas F, Ammerer G.

Proteomics. 2012 Oct;12(19-20):3030-43. doi: 10.1002/pmic.201200185. Epub 2012 Sep 19.


Binding of the Atg1/ULK1 kinase to the ubiquitin-like protein Atg8 regulates autophagy.

Kraft C, Kijanska M, Kalie E, Siergiejuk E, Lee SS, Semplicio G, Stoffel I, Brezovich A, Verma M, Hansmann I, Ammerer G, Hofmann K, Tooze S, Peter M.

EMBO J. 2012 Sep 12;31(18):3691-703. doi: 10.1038/emboj.2012.225. Epub 2012 Aug 10.


M-Track: detecting short-lived protein-protein interactions in vivo.

Zuzuarregui A, Kupka T, Bhatt B, Dohnal I, Mudrak I, Friedmann C, Schüchner S, Frohner IE, Ammerer G, Ogris E.

Nat Methods. 2012 Jun;9(6):594-6. doi: 10.1038/nmeth.2017. Epub 2012 May 13.


ATM-dependent phosphorylation of SNEVhPrp19/hPso4 is involved in extending cellular life span and suppression of apoptosis.

Dellago H, Khan A, Nussbacher M, Gstraunthaler A, Lämmermann I, Schosserer M, Mück C, Anrather D, Scheffold A, Ammerer G, Jansen-Dürr P, Rudolph KL, Voglauer-Grillari R, Grillari J.

Aging (Albany NY). 2012 Apr;4(4):290-304.


Controlling gene expression in response to stress.

de Nadal E, Ammerer G, Posas F.

Nat Rev Genet. 2011 Nov 3;12(12):833-45. doi: 10.1038/nrg3055. Review.


Proteomic analysis reveals a virtually complete set of proteins for translation and energy generation in elementary bodies of the amoeba symbiont Protochlamydia amoebophila.

Sixt BS, Heinz C, Pichler P, Heinz E, Montanaro J, Op den Camp HJ, Ammerer G, Mechtler K, Wagner M, Horn M.

Proteomics. 2011 May;11(10):1868-92. doi: 10.1002/pmic.201000510. Epub 2011 Apr 18.


Improved precision of iTRAQ and TMT quantification by an axial extraction field in an Orbitrap HCD cell.

Pichler P, Köcher T, Holzmann J, Möhring T, Ammerer G, Mechtler K.

Anal Chem. 2011 Feb 15;83(4):1469-74. doi: 10.1021/ac102265w. Epub 2011 Jan 28.


Proteomic analysis of the outer membrane of Protochlamydia amoebophila elementary bodies.

Heinz E, Pichler P, Heinz C, Op den Camp HJ, Toenshoff ER, Ammerer G, Mechtler K, Wagner M, Horn M.

Proteomics. 2010 Dec;10(24):4363-76. doi: 10.1002/pmic.201000302. Epub 2010 Nov 23.


Activation of Atg1 kinase in autophagy by regulated phosphorylation.

Kijanska M, Dohnal I, Reiter W, Kaspar S, Stoffel I, Ammerer G, Kraft C, Peter M.

Autophagy. 2010 Nov;6(8):1168-78. Epub 2010 Nov 16.


Weak organic acid stress triggers hyperphosphorylation of the yeast zinc-finger transcription factor War1 and dampens stress adaptation.

Frohner IE, Gregori C, Anrather D, Roitinger E, Schüller C, Ammerer G, Kuchler K.

OMICS. 2010 Oct;14(5):575-86. doi: 10.1089/omi.2010.0032. Epub 2010 Aug 20.


Peptide labeling with isobaric tags yields higher identification rates using iTRAQ 4-plex compared to TMT 6-plex and iTRAQ 8-plex on LTQ Orbitrap.

Pichler P, Köcher T, Holzmann J, Mazanek M, Taus T, Ammerer G, Mechtler K.

Anal Chem. 2010 Aug 1;82(15):6549-58. doi: 10.1021/ac100890k.


Casein kinase 1 is required for efficient removal of Rec8 during meiosis I.

Rumpf C, Cipak L, Dudas A, Benko Z, Pozgajova M, Riedel CG, Ammerer G, Mechtler K, Gregan J.

Cell Cycle. 2010 Jul 1;9(13):2657-62. doi: 10.4161/cc.9.13.12146.


High-throughput knockout screen in Schizosaccharomyces pombe identifies a novel gene required for efficient homolog disjunction during meiosis I.

Rumpf C, Cipak L, Novatchkova M, Li Z, Polakova S, Dudas A, Kovacikova I, Miadokova E, Ammerer G, Gregan J.

Cell Cycle. 2010 May;9(9):1802-8. Epub 2010 May 15.


Meiotic chromosome homology search involves modifications of the nuclear envelope protein Matefin/SUN-1.

Penkner AM, Fridkin A, Gloggnitzer J, Baudrimont A, Machacek T, Woglar A, Csaszar E, Pasierbek P, Ammerer G, Gruenbaum Y, Jantsch V.

Cell. 2009 Nov 25;139(5):920-33. doi: 10.1016/j.cell.2009.10.045. Epub 2009 Nov 12.


An improved strategy for tandem affinity purification-tagging of Schizosaccharomyces pombe genes.

Cipak L, Spirek M, Novatchkova M, Chen Z, Rumpf C, Lugmayr W, Mechtler K, Ammerer G, Csaszar E, Gregan J.

Proteomics. 2009 Oct;9(20):4825-8. doi: 10.1002/pmic.200800948.


Cooperation between the INO80 complex and histone chaperones determines adaptation of stress gene transcription in the yeast Saccharomyces cerevisiae.

Klopf E, Paskova L, Solé C, Mas G, Petryshyn A, Posas F, Wintersberger U, Ammerer G, Schüller C.

Mol Cell Biol. 2009 Sep;29(18):4994-5007. doi: 10.1128/MCB.01858-08. Epub 2009 Jul 20.


Sfp1 interaction with TORC1 and Mrs6 reveals feedback regulation on TOR signaling.

Lempiäinen H, Uotila A, Urban J, Dohnal I, Ammerer G, Loewith R, Shore D.

Mol Cell. 2009 Mar 27;33(6):704-16. doi: 10.1016/j.molcel.2009.01.034.


Recruitment of a chromatin remodelling complex by the Hog1 MAP kinase to stress genes.

Mas G, de Nadal E, Dechant R, Rodríguez de la Concepción ML, Logie C, Jimeno-González S, Chávez S, Ammerer G, Posas F.

EMBO J. 2009 Feb 18;28(4):326-36. doi: 10.1038/emboj.2008.299. Epub 2009 Jan 15. Erratum in: EMBO J. 2009 Apr 22;28(8):1191.


Arsenic toxicity to Saccharomyces cerevisiae is a consequence of inhibition of the TORC1 kinase combined with a chronic stress response.

Hosiner D, Lempiäinen H, Reiter W, Urban J, Loewith R, Ammerer G, Schweyen R, Shore D, Schüller C.

Mol Biol Cell. 2009 Feb;20(3):1048-57. doi: 10.1091/mbc.E08-04-0438. Epub 2008 Dec 10.


Enhanced detection and identification of multiply phosphorylated peptides using TiO2 enrichment in combination with MALDI TOF/TOF MS.

Schmidt A, Csaszar E, Ammerer G, Mechtler K.

Proteomics. 2008 Nov;8(21):4577-92. doi: 10.1002/pmic.200800279.


Weak organic acids trigger conformational changes of the yeast transcription factor War1 in vivo to elicit stress adaptation.

Gregori C, Schüller C, Frohner IE, Ammerer G, Kuchler K.

J Biol Chem. 2008 Sep 12;283(37):25752-64. doi: 10.1074/jbc.M803095200. Epub 2008 Jul 11.


Candida glabrata environmental stress response involves Saccharomyces cerevisiae Msn2/4 orthologous transcription factors.

Roetzer A, Gregori C, Jennings AM, Quintin J, Ferrandon D, Butler G, Kuchler K, Ammerer G, Schüller C.

Mol Microbiol. 2008 Aug;69(3):603-20. doi: 10.1111/j.1365-2958.2008.06301.x. Epub 2008 Jun 28.


14-3-3 proteins recognize a histone code at histone H3 and are required for transcriptional activation.

Winter S, Simboeck E, Fischle W, Zupkovitz G, Dohnal I, Mechtler K, Ammerer G, Seiser C.

EMBO J. 2008 Jan 9;27(1):88-99. Epub 2007 Dec 6.


Activation of the G2/M-specific gene CLB2 requires multiple cell cycle signals.

Veis J, Klug H, Koranda M, Ammerer G.

Mol Cell Biol. 2007 Dec;27(23):8364-73. Epub 2007 Oct 1.


The high-osmolarity glycerol response pathway in the human fungal pathogen Candida glabrata strain ATCC 2001 lacks a signaling branch that operates in baker's yeast.

Gregori C, Schüller C, Roetzer A, Schwarzmüller T, Ammerer G, Kuchler K.

Eukaryot Cell. 2007 Sep;6(9):1635-45. Epub 2007 Jul 6.


Sch9 is a major target of TORC1 in Saccharomyces cerevisiae.

Urban J, Soulard A, Huber A, Lippman S, Mukhopadhyay D, Deloche O, Wanke V, Anrather D, Ammerer G, Riezman H, Broach JR, De Virgilio C, Hall MN, Loewith R.

Mol Cell. 2007 Jun 8;26(5):663-74.


Application of different fragmentation techniques for the analysis of phosphopeptides using a hybrid linear ion trap-FTICR mass spectrometer.

Stingl C, Ihling C, Ammerer G, Sinz A, Mechtler K.

Biochim Biophys Acta. 2006 Dec;1764(12):1842-52. Epub 2006 Oct 3.


A dual role for PP1 in shaping the Msn2-dependent transcriptional response to glucose starvation.

De Wever V, Reiter W, Ballarini A, Ammerer G, Brocard C.

EMBO J. 2005 Dec 7;24(23):4115-23. Epub 2005 Nov 10.

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