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Items: 1 to 50 of 346

1.

Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes.

Amato KR, G Sanders J, Song SJ, Nute M, Metcalf JL, Thompson LR, Morton JT, Amir A, J McKenzie V, Humphrey G, Gogul G, Gaffney J, L Baden A, A O Britton G, P Cuozzo F, Di Fiore A, J Dominy N, L Goldberg T, Gomez A, Kowalewski MM, J Lewis R, Link A, L Sauther M, Tecot S, A White B, E Nelson K, M Stumpf R, Knight R, R Leigh S.

ISME J. 2018 Jul 11. doi: 10.1038/s41396-018-0175-0. [Epub ahead of print]

PMID:
29995839
2.

Adverse eating behavior and its association with obesity in Indian adolescents: Evidence from a nonmetropolitan city in India.

Faizi N, Shah MS, Ahmad A, Ansari MA, Amir A, Khalique N.

J Family Med Prim Care. 2018 Jan-Feb;7(1):198-204. doi: 10.4103/jfmpc.jfmpc_139_17.

3.

High and low body mass index may predict severe disease course in children with inflammatory bowel disease.

Yerushalmy-Feler A, Ben-Tov A, Weintraub Y, Amir A, Galai T, Moran-Lev H, Cohen S.

Scand J Gastroenterol. 2018 Jun;53(6):708-713. doi: 10.1080/00365521.2018.1464595. Epub 2018 Apr 24.

PMID:
29688090
4.

KatharoSeq Enables High-Throughput Microbiome Analysis from Low-Biomass Samples.

Minich JJ, Zhu Q, Janssen S, Hendrickson R, Amir A, Vetter R, Hyde J, Doty MM, Stillwell K, Benardini J, Kim JH, Allen EE, Venkateswaran K, Knight R.

mSystems. 2018 Mar 13;3(3). pii: e00218-17. doi: 10.1128/mSystems.00218-17. eCollection 2018 May-Jun.

5.

Mitigate risk for Malaysia's mangroves.

Amir AA.

Science. 2018 Mar 23;359(6382):1342-1343. doi: 10.1126/science.aas9139. No abstract available.

PMID:
29567699
6.

Learning from Noise: How Observing Stochasticity May Aid Microbiology.

Amir A, Balaban NQ.

Trends Microbiol. 2018 Apr;26(4):376-385. doi: 10.1016/j.tim.2018.02.003. Epub 2018 Mar 9. Review.

PMID:
29526404
7.

Modeling Cell Size Regulation: From Single-Cell-Level Statistics to Molecular Mechanisms and Population-Level Effects.

Ho PY, Lin J, Amir A.

Annu Rev Biophys. 2018 May 20;47:251-271. doi: 10.1146/annurev-biophys-070317-032955. Epub 2018 Mar 8.

PMID:
29517919
8.

Reduced red blood cell deformability in Plasmodium knowlesi malaria.

Barber BE, Russell B, Grigg MJ, Zhang R, William T, Amir A, Lau YL, Chatfield MD, Dondorp AM, Anstey NM, Yeo TW.

Blood Adv. 2018 Feb 27;2(4):433-443. doi: 10.1182/bloodadvances.2017013730.

9.

MreB filaments align along greatest principal membrane curvature to orient cell wall synthesis.

Hussain S, Wivagg CN, Szwedziak P, Wong F, Schaefer K, Izoré T, Renner LD, Holmes MJ, Sun Y, Bisson-Filho AW, Walker S, Amir A, Löwe J, Garner EC.

Elife. 2018 Feb 22;7. pii: e32471. doi: 10.7554/eLife.32471.

10.

Phyto-oestrogens affect fertilisation and embryo development in vitro in sheep.

Amir AA, Kelly JM, Kleemann DO, Durmic Z, Blache D, Martin GB.

Reprod Fertil Dev. 2018 Feb 16. doi: 10.1071/RD16481. [Epub ahead of print]

PMID:
29448974
11.

Vigilance-Associated Gamma Oscillations Coordinate the Ensemble Activity of Basolateral Amygdala Neurons.

Amir A, Headley DB, Lee SC, Haufler D, Paré D.

Neuron. 2018 Feb 7;97(3):656-669.e7. doi: 10.1016/j.neuron.2017.12.035.

PMID:
29420934
12.

Gluten-free diet may improve obstructive sleep apnea-related symptoms in children with celiac disease.

Yerushalmy-Feler A, Tauman R, Derowe A, Averbuch E, Ben-Tov A, Weintraub Y, Weiner D, Amir A, Moran-Lev H, Cohen S.

BMC Pediatr. 2018 Feb 7;18(1):35. doi: 10.1186/s12887-018-1039-5.

13.

Gut Microbiota Offers Universal Biomarkers across Ethnicity in Inflammatory Bowel Disease Diagnosis and Infliximab Response Prediction.

Zhou Y, Xu ZZ, He Y, Yang Y, Liu L, Lin Q, Nie Y, Li M, Zhi F, Liu S, Amir A, González A, Tripathi A, Chen M, Wu GD, Knight R, Zhou H, Chen Y.

mSystems. 2018 Jan 30;3(1). pii: e00188-17. doi: 10.1128/mSystems.00188-17. eCollection 2018 Jan-Feb.

14.

De Novo Allergy and Immune-Mediated Disorders Following Solid-Organ Transplantation-Prevalence, Natural History, and Risk Factors.

Marcus N, Amir AZ, Grunebaum E, Dipchand A, Hebert D, Ng VL, Walters T, Avitzur Y.

J Pediatr. 2018 May;196:154-160.e2. doi: 10.1016/j.jpeds.2017.11.026. Epub 2018 Feb 1.

PMID:
29395171
15.

Combining 16S rRNA gene variable regions enables high-resolution microbial community profiling.

Fuks G, Elgart M, Amir A, Zeisel A, Turnbaugh PJ, Soen Y, Shental N.

Microbiome. 2018 Jan 26;6(1):17. doi: 10.1186/s40168-017-0396-x.

16.

Diagnostic tools in childhood malaria.

Amir A, Cheong FW, De Silva JR, Lau YL.

Parasit Vectors. 2018 Jan 23;11(1):53. doi: 10.1186/s13071-018-2617-y. Review.

17.

Structural and quantum mechanical computations to elucidate the altered binding mechanism of metal and drug with pyrazinamidase from Mycobacterium tuberculosis due to mutagenicity.

Rasool N, Iftikhar S, Amir A, Hussain W.

J Mol Graph Model. 2018 Mar;80:126-131. doi: 10.1016/j.jmgm.2017.12.011. Epub 2017 Dec 24.

PMID:
29331879
18.

Archaeal cells share common size control with bacteria despite noisier growth and division.

Eun YJ, Ho PY, Kim M, LaRussa S, Robert L, Renner LD, Schmid A, Garner E, Amir A.

Nat Microbiol. 2018 Feb;3(2):148-154. doi: 10.1038/s41564-017-0082-6. Epub 2017 Dec 18.

PMID:
29255255
19.

Kidney stone composition in the Kingdom of Saudi Arabia
.

Amir A, Matlaga BR, Ziemba JB, Sheikh S.

Clin Nephrol. 2018 May;89(5):345-348. doi: 10.5414/CN109313.

PMID:
29249235
20.

A Story of Migration of a Surgically Implanted Aortic Sutureless Valve.

Amir A, Moore A, Carvalho G, Codère-Marayuma T, Schricker T, Villeneuve V, Hatzakorzian R.

J Cardiothorac Vasc Anesth. 2018 Feb;32(1):464-466. doi: 10.1053/j.jvca.2017.06.038. Epub 2017 Jun 21. No abstract available.

PMID:
29221975
21.

Discrete False-Discovery Rate Improves Identification of Differentially Abundant Microbes.

Jiang L, Amir A, Morton JT, Heller R, Arias-Castro E, Knight R.

mSystems. 2017 Nov 21;2(6). pii: e00092-17. doi: 10.1128/mSystems.00092-17. eCollection 2017 Nov-Dec.

22.

Details Matter: Noise and Model Structure Set the Relationship between Cell Size and Cell Cycle Timing.

Barber F, Ho PY, Murray AW, Amir A.

Front Cell Dev Biol. 2017 Nov 3;5:92. doi: 10.3389/fcell.2017.00092. eCollection 2017.

23.

Diagnostic accuracy of serum miR-122 and miR-199a in women with endometriosis.

Maged AM, Deeb WS, El Amir A, Zaki SS, El Sawah H, Al Mohamady M, Metwally AA, Katta MA.

Int J Gynaecol Obstet. 2018 Apr;141(1):14-19. doi: 10.1002/ijgo.12392. Epub 2017 Dec 16.

PMID:
29149541
24.

Evaluating the impact of domestication and captivity on the horse gut microbiome.

Metcalf JL, Song SJ, Morton JT, Weiss S, Seguin-Orlando A, Joly F, Feh C, Taberlet P, Coissac E, Amir A, Willerslev E, Knight R, McKenzie V, Orlando L.

Sci Rep. 2017 Nov 14;7(1):15497. doi: 10.1038/s41598-017-15375-9.

25.

A Parallel Adder Coordinates Mycobacterial Cell-Cycle Progression and Cell-Size Homeostasis in the Context of Asymmetric Growth and Organization.

Logsdon MM, Ho PY, Papavinasasundaram K, Richardson K, Cokol M, Sassetti CM, Amir A, Aldridge BB.

Curr Biol. 2017 Nov 6;27(21):3367-3374.e7. doi: 10.1016/j.cub.2017.09.046. Epub 2017 Oct 26.

PMID:
29107550
26.

A communal catalogue reveals Earth's multiscale microbial diversity.

Thompson LR, Sanders JG, McDonald D, Amir A, Ladau J, Locey KJ, Prill RJ, Tripathi A, Gibbons SM, Ackermann G, Navas-Molina JA, Janssen S, Kopylova E, Vázquez-Baeza Y, González A, Morton JT, Mirarab S, Zech Xu Z, Jiang L, Haroon MF, Kanbar J, Zhu Q, Jin Song S, Kosciolek T, Bokulich NA, Lefler J, Brislawn CJ, Humphrey G, Owens SM, Hampton-Marcell J, Berg-Lyons D, McKenzie V, Fierer N, Fuhrman JA, Clauset A, Stevens RL, Shade A, Pollard KS, Goodwin KD, Jansson JK, Gilbert JA, Knight R; Earth Microbiome Project Consortium.

Nature. 2017 Nov 23;551(7681):457-463. doi: 10.1038/nature24621. Epub 2017 Nov 1.

PMID:
29088705
27.

Derivation and validation of a universal vital assessment (UVA) score: a tool for predicting mortality in adult hospitalised patients in sub-Saharan Africa.

Moore CC, Hazard R, Saulters KJ, Ainsworth J, Adakun SA, Amir A, Andrews B, Auma M, Baker T, Banura P, Crump JA, Grobusch MP, Huson MAM, Jacob ST, Jarrett OD, Kellett J, Lakhi S, Majwala A, Opio M, Rubach MP, Rylance J, Michael Scheld W, Schieffelin J, Ssekitoleko R, Wheeler I, Barnes LE.

BMJ Glob Health. 2017 Jul 28;2(2):e000344. doi: 10.1136/bmjgh-2017-000344. eCollection 2017.

28.

Perinatal Bisphenol A Exposure Induces Chronic Inflammation in Rabbit Offspring via Modulation of Gut Bacteria and Their Metabolites.

Reddivari L, Veeramachaneni DNR, Walters WA, Lozupone C, Palmer J, Hewage MKK, Bhatnagar R, Amir A, Kennett MJ, Knight R, Vanamala JKP.

mSystems. 2017 Oct 10;2(5). pii: e00093-17. doi: 10.1128/mSystems.00093-17. eCollection 2017 Sep-Oct.

29.

Oral health: Treating refugees.

Hussain SM, Sheikh H, Amir A, Hassan AA.

Br Dent J. 2017 Oct 13;223(7):463. doi: 10.1038/sj.bdj.2017.843. No abstract available.

PMID:
29026244
30.

The sponge microbiome project.

Moitinho-Silva L, Nielsen S, Amir A, Gonzalez A, Ackermann GL, Cerrano C, Astudillo-Garcia C, Easson C, Sipkema D, Liu F, Steinert G, Kotoulas G, McCormack GP, Feng G, Bell JJ, Vicente J, Björk JR, Montoya JM, Olson JB, Reveillaud J, Steindler L, Pineda MC, Marra MV, Ilan M, Taylor MW, Polymenakou P, Erwin PM, Schupp PJ, Simister RL, Knight R, Thacker RW, Costa R, Hill RT, Lopez-Legentil S, Dailianis T, Ravasi T, Hentschel U, Li Z, Webster NS, Thomas T.

Gigascience. 2017 Oct 1;6(10):1-7. doi: 10.1093/gigascience/gix077.

31.

The Effects of Stochasticity at the Single-Cell Level and Cell Size Control on the Population Growth.

Lin J, Amir A.

Cell Syst. 2017 Oct 25;5(4):358-367.e4. doi: 10.1016/j.cels.2017.08.015. Epub 2017 Oct 4.

PMID:
28988800
32.

Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium.

Sinha R, Abu-Ali G, Vogtmann E, Fodor AA, Ren B, Amir A, Schwager E, Crabtree J, Ma S; Microbiome Quality Control Project Consortium, Abnet CC, Knight R, White O, Huttenhower C.

Nat Biotechnol. 2017 Nov;35(11):1077-1086. doi: 10.1038/nbt.3981. Epub 2017 Oct 2.

33.

Differential Recruitment of Competing Valence-Related Amygdala Networks during Anxiety.

Lee SC, Amir A, Haufler D, Pare D.

Neuron. 2017 Sep 27;96(1):81-88.e5. doi: 10.1016/j.neuron.2017.09.002.

PMID:
28957678
34.

Concurrent administration effect of antibiotic and anti-inflammatory drugs on the immunotoxicity of bacterial endotoxins.

El Amir AM, Tanious DG, Mansour HA.

Int Immunopharmacol. 2017 Nov;52:176-184. doi: 10.1016/j.intimp.2017.09.006. Epub 2017 Sep 18.

PMID:
28926774
35.

Fluid resuscitation of patients with severe infection in Uganda: less is more.

Amir A, Saulters KJ, Muhindo R, Moore CC.

J Crit Care. 2017 Dec;42:348-349. doi: 10.1016/j.jcrc.2017.08.041. Epub 2017 Sep 5. No abstract available.

PMID:
28893440
36.
37.

End-stage renal disease in patients with sickle cell disease.

Alkhunaizi AM, Al-Khatti AA, Al-Mueilo SH, Amir A, Yousif B.

Saudi J Kidney Dis Transpl. 2017 Jul-Aug;28(4):751-757.

38.

Mechanical strain sensing implicated in cell shape recovery in Escherichia coli.

Wong F, Renner LD, Özbaykal G, Paulose J, Weibel DB, van Teeffelen S, Amir A.

Nat Microbiol. 2017 Jul 24;2:17115. doi: 10.1038/nmicrobiol.2017.115.

39.

Case Report: A Symptomatic Case of Hymenolepis diminuta Infection in an Urban-Dwelling Adult in Malaysia.

Ahmad AF, Ngui R, Ong J, Sarip F, Ismail WHW, Omar H, Nor ZM, Amir A, Lim YAL, Mahmud R.

Am J Trop Med Hyg. 2017 Jul;97(1):163-165. doi: 10.4269/ajtmh.15-0877.

40.

DNA extraction for streamlined metagenomics of diverse environmental samples.

Marotz C, Amir A, Humphrey G, Gaffney J, Gogul G, Knight R.

Biotechniques. 2017 Jun 1;62(6):290-293. doi: 10.2144/000114559.

41.

Effects of immunonutrition on biomarkers in traumatic brain injury patients in Malaysia: a prospective randomized controlled trial.

Rai VRH, Phang LF, Sia SF, Amir A, Veerakumaran JS, Kassim MKA, Othman R, Tah PC, Loh PS, Jailani MIO, Ong G.

BMC Anesthesiol. 2017 Jun 15;17(1):81. doi: 10.1186/s12871-017-0369-4.

42.

Ocular Surface Changes After Sulfur Mustard Exposure in Rabbits, Monitored by Impression Cytology.

Dachir S, Gutman H, Gore A, Cohen L, Cohen M, Amir A, Horwitz V, Kadar T.

Cornea. 2017 Aug;36(8):980-987. doi: 10.1097/ICO.0000000000001234.

PMID:
28582373
43.

Digitizing mass spectrometry data to explore the chemical diversity and distribution of marine cyanobacteria and algae.

Luzzatto-Knaan T, Garg N, Wang M, Glukhov E, Peng Y, Ackermann G, Amir A, Duggan BM, Ryazanov S, Gerwick L, Knight R, Alexandrov T, Bandeira N, Gerwick WH, Dorrestein PC.

Elife. 2017 May 11;6. pii: e24214. doi: 10.7554/eLife.24214.

44.

Overexpression of fibrinogen-like protein 2 protects against T cell-induced colitis.

Bartczak A, Zhang J, Adeyi O, Amir A, Grant D, Gorczynski R, Selzner N, Chruscinski A, Levy GA.

World J Gastroenterol. 2017 Apr 21;23(15):2673-2684. doi: 10.3748/wjg.v23.i15.2673.

45.
46.

Mosquito Microbiome Dynamics, a Background for Prevalence and Seasonality of West Nile Virus.

Novakova E, Woodhams DC, Rodríguez-Ruano SM, Brucker RM, Leff JW, Maharaj A, Amir A, Knight R, Scott J.

Front Microbiol. 2017 Apr 4;8:526. doi: 10.3389/fmicb.2017.00526. eCollection 2017.

47.

The natural history of primary sclerosing cholangitis in 781 children: A multicenter, international collaboration.

Deneau MR, El-Matary W, Valentino PL, Abdou R, Alqoaer K, Amin M, Amir AZ, Auth M, Bazerbachi F, Broderick A, Chan A, Cotter J, Doan S, El-Youssef M, Ferrari F, Furuya KN, Gottrand M, Gottrand F, Gupta N, Homan M, Kamath BM, Kim KM, Kolho KL, Konidari A, Koot B, Iorio R, Ledder O, Mack C, Martinez M, Miloh T, Mohan P, O'Cathain N, Papadopoulou A, Ricciuto A, Saubermann L, Sathya P, Shteyer E, Smolka V, Tanaka A, Varier R, Venkat V, Vitola B, Vos MB, Woynarowski M, Yap J, Jensen MK.

Hepatology. 2017 Aug;66(2):518-527. doi: 10.1002/hep.29204. Epub 2017 Jun 26.

PMID:
28390159
48.

Correcting for Microbial Blooms in Fecal Samples during Room-Temperature Shipping.

Amir A, McDonald D, Navas-Molina JA, Debelius J, Morton JT, Hyde E, Robbins-Pianka A, Knight R.

mSystems. 2017 Mar 7;2(2). pii: e00199-16. doi: 10.1128/mSystems.00199-16. eCollection 2017 Mar-Apr.

49.

Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns.

Amir A, McDonald D, Navas-Molina JA, Kopylova E, Morton JT, Zech Xu Z, Kightley EP, Thompson LR, Hyde ER, Gonzalez A, Knight R.

mSystems. 2017 Mar 7;2(2). pii: e00191-16. doi: 10.1128/mSystems.00191-16. eCollection 2017 Mar-Apr.

50.

Nonmonotonic Aging and Memory Retention in Disordered Mechanical Systems.

Lahini Y, Gottesman O, Amir A, Rubinstein SM.

Phys Rev Lett. 2017 Feb 24;118(8):085501. doi: 10.1103/PhysRevLett.118.085501. Epub 2017 Feb 21.

PMID:
28282188

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