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Items: 47

1.

Genome Sequence of Mariprofundus sp. Strain EBB-1, a Novel Marine Autotroph Isolated from an Iron-Sulfur Mineral.

Lopez A, Albino D, Beraki S, Broomell S, Canela R, Dingmon T, Estrada S, Fernandez M, Savalia P, Nealson K, Emerson D, Barco R, Tully BJ, Amend JP.

Microbiol Resour Announc. 2019 Sep 26;8(39). pii: e00995-19. doi: 10.1128/MRA.00995-19.

2.

Minireview: demystifying microbial reaction energetics.

Amend JP, LaRowe DE.

Environ Microbiol. 2019 Oct;21(10):3539-3547. doi: 10.1111/1462-2920.14778. Epub 2019 Aug 27. Review.

PMID:
31403238
3.

The Cell and the Sum of Its Parts: Patterns of Complexity in Biosignatures as Revealed by Deep UV Raman Spectroscopy.

Sapers HM, Razzell Hollis J, Bhartia R, Beegle LW, Orphan VJ, Amend JP.

Front Microbiol. 2019 May 14;10:679. doi: 10.3389/fmicb.2019.00679. eCollection 2019.

4.

Nanocalorimetry Reveals the Growth Dynamics of Escherichia coli Cells Undergoing Adaptive Evolution during Long-Term Stationary Phase.

Robador A, Amend JP, Finkel SE.

Appl Environ Microbiol. 2019 Jul 18;85(15). pii: e00968-19. doi: 10.1128/AEM.00968-19. Print 2019 Aug 1.

PMID:
31152016
5.

Methane-Linked Mechanisms of Electron Uptake from Cathodes by Methanosarcina barkeri.

Rowe AR, Xu S, Gardel E, Bose A, Girguis P, Amend JP, El-Naggar MY.

MBio. 2019 Mar 12;10(2). pii: e02448-18. doi: 10.1128/mBio.02448-18.

6.

Divergent methyl-coenzyme M reductase genes in a deep-subseafloor Archaeoglobi.

Boyd JA, Jungbluth SP, Leu AO, Evans PN, Woodcroft BJ, Chadwick GL, Orphan VJ, Amend JP, Rappé MS, Tyson GW.

ISME J. 2019 May;13(5):1269-1279. doi: 10.1038/s41396-018-0343-2. Epub 2019 Jan 16.

7.

Microbial Organic Matter Degradation Potential in Baltic Sea Sediments Is Influenced by Depositional Conditions and In Situ Geochemistry.

Zinke LA, Glombitza C, Bird JT, Røy H, Jørgensen BB, Lloyd KG, Amend JP, Reese BK.

Appl Environ Microbiol. 2019 Feb 6;85(4). pii: e02164-18. doi: 10.1128/AEM.02164-18. Print 2019 Feb 15.

8.

Survival of the fewest: Microbial dormancy and maintenance in marine sediments through deep time.

Bradley JA, Amend JP, LaRowe DE.

Geobiology. 2019 Jan;17(1):43-59. doi: 10.1111/gbi.12313. Epub 2018 Sep 24.

9.

Genomic Description of 'Candidatus Abyssubacteria,' a Novel Subsurface Lineage Within the Candidate Phylum Hydrogenedentes.

Momper L, Aronson HS, Amend JP.

Front Microbiol. 2018 Aug 28;9:1993. doi: 10.3389/fmicb.2018.01993. eCollection 2018.

10.

Sediment Microbial Communities Influenced by Cool Hydrothermal Fluid Migration.

Zinke LA, Reese BK, McManus J, Wheat CG, Orcutt BN, Amend JP.

Front Microbiol. 2018 Jun 13;9:1249. doi: 10.3389/fmicb.2018.01249. eCollection 2018.

11.

Bioenergetic Controls on Microbial Ecophysiology in Marine Sediments.

Bradley JA, Amend JP, LaRowe DE.

Front Microbiol. 2018 Feb 13;9:180. doi: 10.3389/fmicb.2018.00180. eCollection 2018.

12.

Changes in Microbial Energy Metabolism Measured by Nanocalorimetry during Growth Phase Transitions.

Robador A, LaRowe DE, Finkel SE, Amend JP, Nealson KH.

Front Microbiol. 2018 Feb 1;9:109. doi: 10.3389/fmicb.2018.00109. eCollection 2018.

13.

Thriving or surviving? Evaluating active microbial guilds in Baltic Sea sediment.

Zinke LA, Mullis MM, Bird JT, Marshall IPG, Jørgensen BB, Lloyd KG, Amend JP, Kiel Reese B.

Environ Microbiol Rep. 2017 Oct;9(5):528-536. doi: 10.1111/1758-2229.12578. Epub 2017 Sep 19.

PMID:
28836742
14.

Major phylum-level differences between porefluid and host rock bacterial communities in the terrestrial deep subsurface.

Momper L, Kiel Reese B, Zinke L, Wanger G, Osburn MR, Moser D, Amend JP.

Environ Microbiol Rep. 2017 Oct;9(5):501-511. doi: 10.1111/1758-2229.12563. Epub 2017 Aug 14.

PMID:
28677247
15.

Corrigendum: Metagenome sequencing and 98 microbial genomes from Juan de Fuca Ridge flank subsurface fluids.

Jungbluth SP, Amend JP, Rappé MS.

Sci Data. 2017 Jul 4;4:170080. doi: 10.1038/sdata.2017.80.

16.

Energy and carbon metabolisms in a deep terrestrial subsurface fluid microbial community.

Momper L, Jungbluth SP, Lee MD, Amend JP.

ISME J. 2017 Oct;11(10):2319-2333. doi: 10.1038/ismej.2017.94. Epub 2017 Jun 23.

17.

Metagenome sequencing and 98 microbial genomes from Juan de Fuca Ridge flank subsurface fluids.

Jungbluth SP, Amend JP, Rappé MS.

Sci Data. 2017 Mar 28;4:170037. doi: 10.1038/sdata.2017.37. Erratum in: Sci Data. 2017 Jul 04;4:170080.

18.

In situ electrochemical enrichment and isolation of a magnetite-reducing bacterium from a high pH serpentinizing spring.

Rowe AR, Yoshimura M, LaRowe DE, Bird LJ, Amend JP, Hashimoto K, Nealson KH, Okamoto A.

Environ Microbiol. 2017 Jun;19(6):2272-2285. doi: 10.1111/1462-2920.13723. Epub 2017 May 5.

PMID:
28276203
19.

Isolation and Characterization of Electrochemically Active Subsurface Delftia and Azonexus Species.

Jangir Y, French S, Momper LM, Moser DP, Amend JP, El-Naggar MY.

Front Microbiol. 2016 May 23;7:756. doi: 10.3389/fmicb.2016.00756. eCollection 2016.

20.

Nanocalorimetric Characterization of Microbial Activity in Deep Subsurface Oceanic Crustal Fluids.

Robador A, LaRowe DE, Jungbluth SP, Lin HT, Rappé MS, Nealson KH, Amend JP.

Front Microbiol. 2016 Apr 5;7:454. doi: 10.3389/fmicb.2016.00454. eCollection 2016.

21.

Evolutionary tradeoffs in cellular composition across diverse bacteria.

Kempes CP, Wang L, Amend JP, Doyle J, Hoehler T.

ISME J. 2016 Sep;10(9):2145-57. doi: 10.1038/ismej.2016.21. Epub 2016 Apr 5.

22.

The energetics of anabolism in natural settings.

LaRowe DE, Amend JP.

ISME J. 2016 Jun;10(6):1285-95. doi: 10.1038/ismej.2015.227. Epub 2016 Feb 9.

23.

Thermal and geochemical influences on microbial biogeography in the hydrothermal sediments of Guaymas Basin, Gulf of California.

McKay L, Klokman VW, Mendlovitz HP, LaRowe DE, Hoer DR, Albert D, Amend JP, Teske A.

Environ Microbiol Rep. 2016 Feb;8(1):150-61. doi: 10.1111/1758-2229.12365. Epub 2016 Jan 22.

PMID:
26637109
24.

Power limits for microbial life.

LaRowe DE, Amend JP.

Front Microbiol. 2015 Jul 15;6:718. doi: 10.3389/fmicb.2015.00718. eCollection 2015.

25.

Bacillus rigiliprofundi sp. nov., an endospore-forming, Mn-oxidizing, moderately halophilic bacterium isolated from deep subseafloor basaltic crust.

Sylvan JB, Hoffman CL, Momper LM, Toner BM, Amend JP, Edwards KJ.

Int J Syst Evol Microbiol. 2015 Jun;65(Pt 6):1992-8. doi: 10.1099/ijs.0.000211. Epub 2015 Mar 26.

PMID:
25813363
26.

Activity and phylogenetic diversity of sulfate-reducing microorganisms in low-temperature subsurface fluids within the upper oceanic crust.

Robador A, Jungbluth SP, LaRowe DE, Bowers RM, Rappé MS, Amend JP, Cowen JP.

Front Microbiol. 2015 Jan 14;5:748. doi: 10.3389/fmicb.2014.00748. eCollection 2014.

27.

Chemolithotrophy in the continental deep subsurface: Sanford Underground Research Facility (SURF), USA.

Osburn MR, LaRowe DE, Momper LM, Amend JP.

Front Microbiol. 2014 Nov 12;5:610. doi: 10.3389/fmicb.2014.00610. eCollection 2014.

28.

Burkholderia insulsa sp. nov., a facultatively chemolithotrophic bacterium isolated from an arsenic-rich shallow marine hydrothermal system.

Rusch A, Islam S, Savalia P, Amend JP.

Int J Syst Evol Microbiol. 2015 Jan;65(Pt 1):189-94. doi: 10.1099/ijs.0.064477-0. Epub 2014 Oct 16.

PMID:
25323596
29.

Sulfur and oxygen isotope insights into sulfur cycling in shallow-sea hydrothermal vents, Milos, Greece.

Gilhooly WP, Fike DA, Druschel GK, Kafantaris FC, Price RE, Amend JP.

Geochem Trans. 2014 Aug 12;15:12. doi: 10.1186/s12932-014-0012-y. eCollection 2014.

30.

Geochemistry and microbial ecology in alkaline hot springs of Ambitle Island, Papua New Guinea.

Meyer-Dombard DR, Amend JP.

Extremophiles. 2014 Jul;18(4):763-78. doi: 10.1007/s00792-014-0657-6. Epub 2014 Jun 6.

PMID:
24903703
31.

The potential for biologically catalyzed anaerobic methane oxidation on ancient Mars.

Marlow JJ, Larowe DE, Ehlmann BL, Amend JP, Orphan VJ.

Astrobiology. 2014 Apr;14(4):292-307. doi: 10.1089/ast.2013.1078. Epub 2014 Mar 31.

PMID:
24684241
32.

Archaeal and bacterial diversity in an arsenic-rich shallow-sea hydrothermal system undergoing phase separation.

Price RE, Lesniewski R, Nitzsche KS, Meyerdierks A, Saltikov C, Pichler T, Amend JP.

Front Microbiol. 2013 Jul 9;4:158. doi: 10.3389/fmicb.2013.00158. eCollection 2013.

33.

The energetics of organic synthesis inside and outside the cell.

Amend JP, LaRowe DE, McCollom TM, Shock EL.

Philos Trans R Soc Lond B Biol Sci. 2013 Jun 10;368(1622):20120255. doi: 10.1098/rstb.2012.0255. Print 2013 Jul 19. Review.

34.

Effects of trace element concentrations on culturing thermophiles.

Meyer-Dombard DR, Shock EL, Amend JP.

Extremophiles. 2012 Mar;16(2):317-31. doi: 10.1007/s00792-012-0432-5. Epub 2012 Feb 4.

PMID:
22311159
35.

Energy sources for chemolithotrophs in an arsenic- and iron-rich shallow-sea hydrothermal system.

Akerman NH, Price RE, Pichler T, Amend JP.

Geobiology. 2011 Sep;9(5):436-45. doi: 10.1111/j.1472-4669.2011.00291.x.

PMID:
21884364
36.

Preservation of martian organic and environmental records: final report of the Mars biosignature working group.

Summons RE, Amend JP, Bish D, Buick R, Cody GD, Des Marais DJ, Dromart G, Eigenbrode JL, Knoll AH, Sumner DY.

Astrobiology. 2011 Mar;11(2):157-81. doi: 10.1089/ast.2010.0506. Epub 2011 Mar 9. Review.

PMID:
21417945
37.

Thermogladius shockii gen. nov., sp. nov., a hyperthermophilic crenarchaeote from Yellowstone National Park, USA.

Osburn MR, Amend JP.

Arch Microbiol. 2011 Jan;193(1):45-52. doi: 10.1007/s00203-010-0639-8. Epub 2010 Oct 27.

PMID:
20978744
38.

Temporal changes in fluid chemistry and energy profiles in the vulcano island hydrothermal system.

Rogers KL, Amend JP, Gurrieri S.

Astrobiology. 2007 Dec;7(6):905-32. doi: 10.1089/ast.2007.0128.

PMID:
18163870
39.

A "follow the energy" approach for astrobiology.

Hoehler TM, Amend JP, Shock EL.

Astrobiology. 2007 Dec;7(6):819-23. No abstract available.

PMID:
18069913
40.
41.

Order-specific 16S rRNA-targeted oligonucleotide probes for (hyper)thermophilic archaea and bacteria.

Rusch A, Amend JP.

Extremophiles. 2004 Oct;8(5):357-66. Epub 2004 May 27.

PMID:
15168171
42.

Metabolism of organic compounds in anaerobic, hydrothermal sulphate-reducing marine sediments.

Tor JM, Amend JP, Lovley DR.

Environ Microbiol. 2003 Jul;5(7):583-91.

PMID:
12823190
43.

Palaeococcus helgesonii sp. nov., a facultatively anaerobic, hyperthermophilic archaeon from a geothermal well on Vulcano Island, Italy.

Amend JP, Meyer-Dombard DR, Sheth SN, Zolotova N, Amend AC.

Arch Microbiol. 2003 Jun;179(6):394-401. Epub 2003 Apr 8.

PMID:
12682713
44.
45.

Energetics of overall metabolic reactions of thermophilic and hyperthermophilic Archaea and bacteria.

Amend JP, Shock EL.

FEMS Microbiol Rev. 2001 Apr;25(2):175-243. Review.

47.

Energetics of amino acid synthesis in hydrothermal ecosystems.

Amend JP, Shock EL.

Science. 1998 Sep 11;281(5383):1659-62.

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