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Items: 29

1.

Correction for Gladue et al., "Foot-and-Mouth Disease Virus Modulates Cellular Vimentin for Virus Survival".

Gladue DP, O'Donnell V, Baker-Branstetter R, Holinka LG, Pacheco JM, Fernández Sainz I, Lu Z, Ambroggio X, Rodriguez L, Borca MV.

J Virol. 2019 Jan 4;93(2). pii: e01799-18. doi: 10.1128/JVI.01799-18. Print 2019 Jan 15. No abstract available.

2.

Ebola virus VP24 interacts with NP to facilitate nucleocapsid assembly and genome packaging.

Banadyga L, Hoenen T, Ambroggio X, Dunham E, Groseth A, Ebihara H.

Sci Rep. 2017 Aug 9;7(1):7698. doi: 10.1038/s41598-017-08167-8.

3.

Functional Class I and II amino acid-activating enzymes can be coded by opposite strands of the same gene.

Martinez-Rodriguez L, Erdogan O, Jimenez-Rodriguez M, Gonzalez-Rivera K, Williams T, Li L, Weinreb V, Collier M, Chandrasekaran SN, Ambroggio X, Kuhlman B, Carter CW Jr.

J Biol Chem. 2016 Nov 4;291(45):23830-23831. No abstract available.

4.

Structural and Immunological Characterization of Recombinant 6-Cysteine Domains of the Plasmodium falciparum Sexual Stage Protein Pfs230.

MacDonald NJ, Nguyen V, Shimp R, Reiter K, Herrera R, Burkhardt M, Muratova O, Kumar K, Aebig J, Rausch K, Lambert L, Dawson N, Sattabongkot J, Ambroggio X, Duffy PE, Wu Y, Narum DL.

J Biol Chem. 2016 Sep 16;291(38):19913-22. doi: 10.1074/jbc.M116.732305. Epub 2016 Jul 18.

5.

Tyrosine-sulfated V2 peptides inhibit HIV-1 infection via coreceptor mimicry.

Cimbro R, Peterson FC, Liu Q, Guzzo C, Zhang P, Miao H, Van Ryk D, Ambroggio X, Hurt DE, De Gioia L, Volkman BF, Dolan MA, Lusso P.

EBioMedicine. 2016 Aug;10:45-54. doi: 10.1016/j.ebiom.2016.06.037. Epub 2016 Jun 26.

6.

Functional Class I and II Amino Acid-activating Enzymes Can Be Coded by Opposite Strands of the Same Gene.

Martinez-Rodriguez L, Erdogan O, Jimenez-Rodriguez M, Gonzalez-Rivera K, Williams T, Li L, Weinreb V, Collier M, Chandrasekaran SN, Ambroggio X, Kuhlman B, Carter CW Jr.

J Biol Chem. 2015 Aug 7;290(32):19710-25. doi: 10.1074/jbc.M115.642876. Epub 2015 Jun 18. Erratum in: J Biol Chem. 2016 Nov 4;291(45):23830-23831.

7.

The Rodin-Ohno hypothesis that two enzyme superfamilies descended from one ancestral gene: an unlikely scenario for the origins of translation that will not be dismissed.

Carter CW Jr, Li L, Weinreb V, Collier M, Gonzalez-Rivera K, Jimenez-Rodriguez M, Erdogan O, Kuhlman B, Ambroggio X, Williams T, Chandrasekharan SN.

Biol Direct. 2014 Jun 14;9:11. doi: 10.1186/1745-6150-9-11.

8.

Nucleotide excision repair/transcription gene defects in the fetus and impaired TFIIH-mediated function in transcription in placenta leading to preeclampsia.

Moslehi R, Ambroggio X, Nagarajan V, Kumar A, Dzutsev A.

BMC Genomics. 2014 May 15;15:373. doi: 10.1186/1471-2164-15-373.

9.

Metals in protein-protein interfaces.

Song WJ, Sontz PA, Ambroggio XI, Tezcan FA.

Annu Rev Biophys. 2014;43:409-31. doi: 10.1146/annurev-biophys-051013-023038. Review.

PMID:
24773016
10.

Regulatory protein BBD18 of the lyme disease spirochete: essential role during tick acquisition?

Hayes BM, Dulebohn DP, Sarkar A, Tilly K, Bestor A, Ambroggio X, Rosa PA.

MBio. 2014 Apr 1;5(2):e01017-14. doi: 10.1128/mBio.01017-14. Erratum in: MBio. 2014;5(4):doi: 10.1128/mBio.01608-14.

11.

Integrative transcriptome analysis reveals dysregulation of canonical cancer molecular pathways in placenta leading to preeclampsia.

Moslehi R, Mills JL, Signore C, Kumar A, Ambroggio X, Dzutsev A.

Sci Rep. 2013;3:2407. doi: 10.1038/srep02407.

12.

HASP server: a database and structural visualization platform for comparative models of influenza A hemagglutinin proteins.

Ambroggio XI, Dommer J, Gopalan V, Dunham EJ, Taubenberger JK, Hurt DE.

BMC Bioinformatics. 2013 Jun 18;14:197. doi: 10.1186/1471-2105-14-197.

13.

Foot-and-mouth disease virus modulates cellular vimentin for virus survival.

Gladue DP, O'Donnell V, Baker-Branstetter R, Holinka LG, Pacheco JM, Fernández Sainz I, Lu Z, Ambroggio X, Rodriguez L, Borca MV.

J Virol. 2013 Jun;87(12):6794-803. doi: 10.1128/JVI.00448-13. Epub 2013 Apr 10. Erratum in: J Virol. 2019 Jan 4;93(2):.

14.

An accurate binding interaction model in de novo computational protein design of interactions: if you build it, they will bind.

London N, Ambroggio X.

J Struct Biol. 2014 Feb;185(2):136-46. doi: 10.1016/j.jsb.2013.03.012. Epub 2013 Apr 1. Review.

PMID:
23558036
15.

The epitope of monoclonal antibodies blocking erythrocyte invasion by Plasmodium falciparum map to the dimerization and receptor glycan binding sites of EBA-175.

Ambroggio X, Jiang L, Aebig J, Obiakor H, Lukszo J, Narum DL.

PLoS One. 2013;8(2):e56326. doi: 10.1371/journal.pone.0056326. Epub 2013 Feb 15.

16.

Both genome segments contribute to the pathogenicity of very virulent infectious bursal disease virus.

Escaffre O, Le Nouën C, Amelot M, Ambroggio X, Ogden KM, Guionie O, Toquin D, Müller H, Islam MR, Eterradossi N.

J Virol. 2013 Mar;87(5):2767-80. doi: 10.1128/JVI.02360-12. Epub 2012 Dec 26.

17.

Metal-directed, chemically tunable assembly of one-, two- and three-dimensional crystalline protein arrays.

Brodin JD, Ambroggio XI, Tang C, Parent KN, Baker TS, Tezcan FA.

Nat Chem. 2012 Mar 4;4(5):375-82. doi: 10.1038/nchem.1290.

18.

Classical swine fever virus p7 protein is a viroporin involved in virulence in swine.

Gladue DP, Holinka LG, Largo E, Fernandez Sainz I, Carrillo C, O'Donnell V, Baker-Branstetter R, Lu Z, Ambroggio X, Risatti GR, Nieva JL, Borca MV.

J Virol. 2012 Jun;86(12):6778-91. doi: 10.1128/JVI.00560-12. Epub 2012 Apr 11.

19.

Analysis of the conformation and function of the Plasmodium falciparum merozoite proteins MTRAP and PTRAMP.

Uchime O, Herrera R, Reiter K, Kotova S, Shimp RL Jr, Miura K, Jones D, Lebowitz J, Ambroggio X, Hurt DE, Jin AJ, Long C, Miller LH, Narum DL.

Eukaryot Cell. 2012 May;11(5):615-25. doi: 10.1128/EC.00039-12. Epub 2012 Mar 30.

20.

Phenotype-specific adverse effects of XPD mutations on human prenatal development implicate impairment of TFIIH-mediated functions in placenta.

Moslehi R, Kumar A, Mills JL, Ambroggio X, Signore C, Dzutsev A.

Eur J Hum Genet. 2012 Jun;20(6):626-31. doi: 10.1038/ejhg.2011.249. Epub 2012 Jan 11.

21.

Autopsy series of 68 cases dying before and during the 1918 influenza pandemic peak.

Sheng ZM, Chertow DS, Ambroggio X, McCall S, Przygodzki RM, Cunningham RE, Maximova OA, Kash JC, Morens DM, Taubenberger JK.

Proc Natl Acad Sci U S A. 2011 Sep 27;108(39):16416-21. doi: 10.1073/pnas.1111179108. Epub 2011 Sep 19.

22.

Binding of Plasmodium merozoite proteins RON2 and AMA1 triggers commitment to invasion.

Srinivasan P, Beatty WL, Diouf A, Herrera R, Ambroggio X, Moch JK, Tyler JS, Narum DL, Pierce SK, Boothroyd JC, Haynes JD, Miller LH.

Proc Natl Acad Sci U S A. 2011 Aug 9;108(32):13275-80. doi: 10.1073/pnas.1110303108. Epub 2011 Jul 25.

23.

Evolution of metal selectivity in templated protein interfaces.

Brodin JD, Medina-Morales A, Ni T, Salgado EN, Ambroggio XI, Tezcan FA.

J Am Chem Soc. 2010 Jun 30;132(25):8610-7. doi: 10.1021/ja910844n.

24.

Metal templated design of protein interfaces.

Salgado EN, Ambroggio XI, Brodin JD, Lewis RA, Kuhlman B, Tezcan FA.

Proc Natl Acad Sci U S A. 2010 Feb 2;107(5):1827-32. doi: 10.1073/pnas.0906852107. Epub 2009 Dec 23.

25.

Structural organization of the 19S proteasome lid: insights from MS of intact complexes.

Sharon M, Taverner T, Ambroggio XI, Deshaies RJ, Robinson CV.

PLoS Biol. 2006 Aug;4(8):e267.

26.

Design of protein conformational switches.

Ambroggio XI, Kuhlman B.

Curr Opin Struct Biol. 2006 Aug;16(4):525-30. Epub 2006 Jun 12. Review.

PMID:
16765587
27.

Computational design of a single amino acid sequence that can switch between two distinct protein folds.

Ambroggio XI, Kuhlman B.

J Am Chem Soc. 2006 Feb 1;128(4):1154-61.

PMID:
16433531
28.

JAMM: a metalloprotease-like zinc site in the proteasome and signalosome.

Ambroggio XI, Rees DC, Deshaies RJ.

PLoS Biol. 2004 Jan;2(1):E2. Epub 2003 Nov 24.

29.

High resolution crystal structures of the wild type and Cys-55-->Ser and Cys-59-->Ser variants of the thioredoxin-like [2Fe-2S] ferredoxin from Aquifex aeolicus.

Yeh AP, Ambroggio XI, Andrade SL, Einsle O, Chatelet C, Meyer J, Rees DC.

J Biol Chem. 2002 Sep 13;277(37):34499-507. Epub 2002 Jun 27.

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