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Best matches for Ambjörnsson T[au]:

The resistomes of six carbapenem-resistant pathogens - a critical genotype-phenotype analysis. Johnning A et al. Microb Genom. (2018)

Noise reduction in single time frame optical DNA maps. Torche PC et al. PLoS One. (2017)

Fitting a function to time-dependent ensemble averaged data. Fogelmark K et al. Sci Rep. (2018)

Search results

Items: 46

1.

Optical DNA Mapping Combined with Cas9-Targeted Resistance Gene Identification for Rapid Tracking of Resistance Plasmids in a Neonatal Intensive Care Unit Outbreak.

Bikkarolla SK, Nordberg V, Rajer F, Müller V, Kabir MH, Kk S, Dvirnas A, Ambjörnsson T, Giske CG, Navér L, Sandegren L, Westerlund F.

MBio. 2019 Jul 9;10(4). pii: e00347-19. doi: 10.1128/mBio.00347-19.

2.

Enzyme-free optical DNA mapping of the human genome using competitive binding.

Müller V, Dvirnas A, Andersson J, Singh V, Kk S, Johansson P, Ebenstein Y, Ambjörnsson T, Westerlund F.

Nucleic Acids Res. 2019 Sep 5;47(15):e89. doi: 10.1093/nar/gkz489.

3.

Stochastic unfolding of nanoconfined DNA: Experiments, model and Bayesian analysis.

Krog J, Alizadehheidari M, Werner E, Bikkarolla SK, Tegenfeldt JO, Mehlig B, Lomholt MA, Westerlund F, Ambjörnsson T.

J Chem Phys. 2018 Dec 7;149(21):215101. doi: 10.1063/1.5051319.

PMID:
30525714
4.

The resistomes of six carbapenem-resistant pathogens - a critical genotype-phenotype analysis.

Johnning A, Karami N, Tång Hallbäck E, Müller V, Nyberg L, Buongermino Pereira M, Stewart C, Ambjörnsson T, Westerlund F, Adlerberth I, Kristiansson E.

Microb Genom. 2018 Nov;4(11). doi: 10.1099/mgen.0.000233. Epub 2018 Nov 21.

5.

Zero-crossing statistics for non-Markovian time series.

Nyberg M, Lizana L, Ambjörnsson T.

Phys Rev E. 2018 Mar;97(3-1):032114. doi: 10.1103/PhysRevE.97.032114.

PMID:
29776037
6.

Fitting a function to time-dependent ensemble averaged data.

Fogelmark K, Lomholt MA, Irbäck A, Ambjörnsson T.

Sci Rep. 2018 May 3;8(1):6984. doi: 10.1038/s41598-018-24983-y.

7.

Facilitated sequence assembly using densely labeled optical DNA barcodes: A combinatorial auction approach.

Dvirnas A, Pichler C, Stewart CL, Quaderi S, Nyberg LK, Müller V, Kumar Bikkarolla S, Kristiansson E, Sandegren L, Westerlund F, Ambjörnsson T.

PLoS One. 2018 Mar 9;13(3):e0193900. doi: 10.1371/journal.pone.0193900. eCollection 2018.

8.

Corrigendum: Rapid identification of intact bacterial resistance plasmids via optical mapping of single DNA molecules.

Nyberg LK, Quaderi S, Emilsson G, Karami N, Lagerstedt E, Müller V, Noble C, Hammarberg S, Nilsson AN, Sjöberg F, Fritzsche J, Kristiansson E, Sandegren L, Ambjörnsson T, Westerlund F.

Sci Rep. 2017 Dec 22;7:46911. doi: 10.1038/srep46911.

9.

Noise reduction in single time frame optical DNA maps.

Torche PC, Müller V, Westerlund F, Ambjörnsson T.

PLoS One. 2017 Jun 22;12(6):e0179041. doi: 10.1371/journal.pone.0179041. eCollection 2017.

10.

Direct identification of antibiotic resistance genes on single plasmid molecules using CRISPR/Cas9 in combination with optical DNA mapping.

Müller V, Rajer F, Frykholm K, Nyberg LK, Quaderi S, Fritzsche J, Kristiansson E, Ambjörnsson T, Sandegren L, Westerlund F.

Sci Rep. 2016 Dec 1;6:37938. doi: 10.1038/srep37938.

11.

Super-Resolution Genome Mapping in Silicon Nanochannels.

Jeffet J, Kobo A, Su T, Grunwald A, Green O, Nilsson AN, Eisenberg E, Ambjörnsson T, Westerlund F, Weinhold E, Shabat D, Purohit PK, Ebenstein Y.

ACS Nano. 2016 Nov 22;10(11):9823-9830. Epub 2016 Sep 23.

PMID:
27646634
12.

Rapid Tracing of Resistance Plasmids in a Nosocomial Outbreak Using Optical DNA Mapping.

Müller V, Karami N, Nyberg LK, Pichler C, Torche Pedreschi PC, Quaderi S, Fritzsche J, Ambjörnsson T, Åhrén C, Westerlund F.

ACS Infect Dis. 2016 May 13;2(5):322-8. doi: 10.1021/acsinfecdis.6b00017. Epub 2016 Mar 29.

PMID:
27627201
13.

Rapid identification of intact bacterial resistance plasmids via optical mapping of single DNA molecules.

Nyberg LK, Quaderi S, Emilsson G, Karami N, Lagerstedt E, Müller V, Noble C, Hammarberg S, Nilsson AN, Sjöberg F, Fritzsche J, Kristiansson E, Sandegren L, Ambjörnsson T, Westerlund F.

Sci Rep. 2016 Jul 27;6:30410. doi: 10.1038/srep30410. Erratum in: Sci Rep. 2017 Dec 22;7:46911.

14.

Extension of nanoconfined DNA: Quantitative comparison between experiment and theory.

Iarko V, Werner E, Nyberg LK, Müller V, Fritzsche J, Ambjörnsson T, Beech JP, Tegenfeldt JO, Mehlig K, Westerlund F, Mehlig B.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Dec;92(6):062701. doi: 10.1103/PhysRevE.92.062701. Epub 2015 Dec 2.

PMID:
26764721
15.

How nanochannel confinement affects the DNA melting transition within the Poland-Scheraga model.

Reiter-Schad M, Werner E, Tegenfeldt JO, Mehlig B, Ambjörnsson T.

J Chem Phys. 2015 Sep 21;143(11):115101. doi: 10.1063/1.4930220.

PMID:
26395739
16.

Visualizing the entire DNA from a chromosome in a single frame.

Freitag C, Noble C, Fritzsche J, Persson F, Reiter-Schad M, Nilsson AN, Granéli A, Ambjörnsson T, Mir KU, Tegenfeldt JO.

Biomicrofluidics. 2015 Aug 5;9(4):044114. doi: 10.1063/1.4923262. eCollection 2015 Jul.

17.

Model for melting of confined DNA.

Werner E, Reiter-Schad M, Ambjörnsson T, Mehlig B.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Jun;91(6):060702. Epub 2015 Jun 26.

PMID:
26172649
18.

Bacteriophage strain typing by rapid single molecule analysis.

Grunwald A, Dahan M, Giesbertz A, Nilsson A, Nyberg LK, Weinhold E, Ambjörnsson T, Westerlund F, Ebenstein Y.

Nucleic Acids Res. 2015 Oct 15;43(18):e117. doi: 10.1093/nar/gkv563. Epub 2015 May 27.

19.

Fast size-determination of intact bacterial plasmids using nanofluidic channels.

Frykholm K, Nyberg LK, Lagerstedt E, Noble C, Fritzsche J, Karami N, Ambjörnsson T, Sandegren L, Westerlund F.

Lab Chip. 2015 Jul 7;15(13):2739-43. doi: 10.1039/c5lc00378d. Epub 2015 May 21.

PMID:
25997119
20.

A fast and scalable kymograph alignment algorithm for nanochannel-based optical DNA mappings.

Noble C, Nilsson AN, Freitag C, Beech JP, Tegenfeldt JO, Ambjörnsson T.

PLoS One. 2015 Apr 13;10(4):e0121905. doi: 10.1371/journal.pone.0121905. eCollection 2015.

21.

Non-Markovian effects in the first-passage dynamics of obstructed tracer particle diffusion in one-dimensional systems.

Forsling R, Sanders LP, Ambjörnsson T, Lizana L.

J Chem Phys. 2014 Sep 7;141(9):094902. doi: 10.1063/1.4894117.

PMID:
25194389
22.

Competitive binding-based optical DNA mapping for fast identification of bacteria--multi-ligand transfer matrix theory and experimental applications on Escherichia coli.

Nilsson AN, Emilsson G, Nyberg LK, Noble C, Stadler LS, Fritzsche J, Moore ER, Tegenfeldt JO, Ambjörnsson T, Westerlund F.

Nucleic Acids Res. 2014 Sep;42(15):e118. doi: 10.1093/nar/gku556. Epub 2014 Jul 10.

23.

Universality and nonuniversality of mobility in heterogeneous single-file systems and Rouse chains.

Lomholt MA, Ambjörnsson T.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Mar;89(3):032101. Epub 2014 Mar 3.

PMID:
24730784
24.

Perturbative solution to susceptible-infected-susceptible epidemics on networks.

Sanders LP, Söderberg B, Brockmann D, Ambjörnsson T.

Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Sep;88(3):032713. Epub 2013 Sep 23.

PMID:
24125300
25.

Microscopic origin of the logarithmic time evolution of aging processes in complex systems.

Lomholt MA, Lizana L, Metzler R, Ambjörnsson T.

Phys Rev Lett. 2013 May 17;110(20):208301. Epub 2013 May 14.

PMID:
25167457
26.

First passage times for a tracer particle in single file diffusion and fractional Brownian motion.

Sanders LP, Ambjörnsson T.

J Chem Phys. 2012 May 7;136(17):175103. doi: 10.1063/1.4707349.

PMID:
22583268
27.

Dissimilar bouncy walkers.

Lomholt MA, Lizana L, Ambjörnsson T.

J Chem Phys. 2011 Jan 28;134(4):045101. doi: 10.1063/1.3526941. Erratum in: J Chem Phys. 2011 Feb 28;134(8):089902.

PMID:
21280802
28.

Foundation of fractional Langevin equation: harmonization of a many-body problem.

Lizana L, Ambjörnsson T, Taloni A, Barkai E, Lomholt MA.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 May;81(5 Pt 1):051118. Epub 2010 May 14.

PMID:
20866196
29.

Diffusion of finite-sized hard-core interacting particles in a one-dimensional box: Tagged particle dynamics.

Lizana L, Ambjörnsson T.

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Nov;80(5 Pt 1):051103. Epub 2009 Nov 5.

PMID:
20364943
30.

Observing plasmonic-molecular resonance coupling on single gold nanorods.

Ni W, Ambjörnsson T, Apell SP, Chen H, Wang J.

Nano Lett. 2010 Jan;10(1):77-84. doi: 10.1021/nl902851b.

PMID:
19957966
31.

Bubble merging in breathing DNA as a vicious walker problem in opposite potentials.

Pedersen JN, Hansen MS, Novotný T, Ambjörnsson T, Metzler R.

J Chem Phys. 2009 Apr 28;130(16):164117. doi: 10.1063/1.3117922.

PMID:
19405571
32.

Single DNA denaturation and bubble dynamics.

Metzler R, Ambjörnsson T, Hanke A, Fogedby HC.

J Phys Condens Matter. 2009 Jan 21;21(3):034111. doi: 10.1088/0953-8984/21/3/034111. Epub 2008 Dec 17.

PMID:
21817256
33.

Single-file dynamics with different diffusion constants.

Ambjörnsson T, Lizana L, Lomholt MA, Silbey RJ.

J Chem Phys. 2008 Nov 14;129(18):185106. doi: 10.1063/1.3009853.

PMID:
19045434
34.

Diffusion of two particles with a finite interaction potential in one dimension.

Ambjörnsson T, Silbey RJ.

J Chem Phys. 2008 Oct 28;129(16):165103. doi: 10.1063/1.2999602.

PMID:
19045318
35.

Single-file diffusion in a box.

Lizana L, Ambjörnsson T.

Phys Rev Lett. 2008 May 23;100(20):200601. Epub 2008 May 19.

PMID:
18518519
36.

Applying a potential across a biomembrane: electrostatic contribution to the bending rigidity and membrane instability.

Ambjörnsson T, Lomholt MA, Hansen PL.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 May;75(5 Pt 1):051916. Epub 2007 May 25.

PMID:
17677107
37.

Master equation approach to DNA breathing in heteropolymer DNA.

Ambjörnsson T, Banik SK, Lomholt MA, Metzler R.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Feb;75(2 Pt 1):021908. Epub 2007 Feb 16.

PMID:
17358368
38.

Breathing dynamics in heteropolymer DNA.

Ambjörnsson T, Banik SK, Krichevsky O, Metzler R.

Biophys J. 2007 Apr 15;92(8):2674-84. Epub 2007 Jan 19.

39.

Sequence sensitivity of breathing dynamics in heteropolymer DNA.

Ambjörnsson T, Banik SK, Krichevsky O, Metzler R.

Phys Rev Lett. 2006 Sep 22;97(12):128105. Epub 2006 Sep 21.

PMID:
17026004
40.

Optimal target search on a fast-folding polymer chain with volume exchange.

Lomholt MA, Ambjörnsson T, Metzler R.

Phys Rev Lett. 2005 Dec 31;95(26):260603. Epub 2005 Dec 22.

PMID:
16486329
41.

Dynamic approach to DNA breathing.

Metzler R, Ambjörnsson T.

J Biol Phys. 2005 Dec;31(3-4):339-50. doi: 10.1007/s10867-005-2410-y.

42.

Directed motion emerging from two coupled random processes: translocation of a chain through a membrane nanopore driven by binding proteins.

Ambjörnsson T, Lomholt MA, Metzler R.

J Phys Condens Matter. 2005 Nov 30;17(47):S3945-64. doi: 10.1088/0953-8984/17/47/021. Epub 2005 Nov 4.

PMID:
21690734
43.

Coupled dynamics of DNA breathing and of proteins that selectively bind to single-stranded DNA.

Ambjörnsson T, Metzler R.

Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Sep;72(3 Pt 1):030901. Epub 2005 Sep 27.

PMID:
16241404
44.

Chaperone-assisted translocation.

Ambjörnsson T, Metzler R.

Phys Biol. 2004 Jun;1(1-2):77-88.

PMID:
16204825
45.

Electromagnetic response of a dipole-coupled ellipsoidal bilayer.

Ambjörnsson T, Apell SP, Mukhopadhyay G.

Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Mar;69(3 Pt 1):031914. Epub 2004 Mar 31.

PMID:
15089329
46.

Ellipsoidal particles driven by intensity gradients through viscous fluids.

Ambjörnsson T, Apell SP.

Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Mar;67(3 Pt 1):031917. Epub 2003 Mar 25.

PMID:
12689111

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