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Items: 38

1.

Shifting Climates, Foods, and Diseases: The Human Microbiome through Evolution.

Amato KR, Jeyakumar T, Poinar H, Gros P.

Bioessays. 2019 Sep 16:e1900034. doi: 10.1002/bies.201900034. [Epub ahead of print] Review.

PMID:
31524305
2.

Plasticity in the Human Gut Microbiome Defies Evolutionary Constraints.

Gomez A, Sharma AK, Mallott EK, Petrzelkova KJ, Jost Robinson CA, Yeoman CJ, Carbonero F, Pafco B, Rothman JM, Ulanov A, Vlckova K, Amato KR, Schnorr SL, Dominy NJ, Modry D, Todd A, Torralba M, Nelson KE, Burns MB, Blekhman R, Remis M, Stumpf RM, Wilson BA, Gaskins HR, Garber PA, White BA, Leigh SR.

mSphere. 2019 Jul 31;4(4). pii: e00271-19. doi: 10.1128/mSphere.00271-19.

3.

Missing Links: the Role of Primates in Understanding the Human Microbiome.

Amato KR.

mSystems. 2019 May 21;4(3). pii: e00165-19. doi: 10.1128/mSystems.00165-19.

4.

Gut microbiota in wild and captive Guizhou snub-nosed monkeys, Rhinopithecus brelichi.

Hale VL, Tan CL, Niu K, Yang Y, Zhang Q, Knight R, Amato KR.

Am J Primatol. 2019 May 20:e22989. doi: 10.1002/ajp.22989. [Epub ahead of print]

PMID:
31106872
5.

Multidisciplinarity in Microbiome Research: A Challenge and Opportunity to Rethink Causation, Variability, and Scale.

Amato KR, Maurice CF, Guillemin K, Giles-Vernick T.

Bioessays. 2019 May 17:e1900007. doi: 10.1002/bies.201900007. [Epub ahead of print] Review.

PMID:
31099415
6.

The unique composition of Indian gut microbiome, gene catalogue, and associated fecal metabolome deciphered using multi-omics approaches.

Dhakan DB, Maji A, Sharma AK, Saxena R, Pulikkan J, Grace T, Gomez A, Scaria J, Amato KR, Sharma VK.

Gigascience. 2019 Mar 1;8(3). pii: giz004. doi: 10.1093/gigascience/giz004.

7.

Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes.

Amato KR, G Sanders J, Song SJ, Nute M, Metcalf JL, Thompson LR, Morton JT, Amir A, J McKenzie V, Humphrey G, Gogul G, Gaffney J, L Baden A, A O Britton G, P Cuozzo F, Di Fiore A, J Dominy N, L Goldberg T, Gomez A, Kowalewski MM, J Lewis R, Link A, L Sauther M, Tecot S, A White B, E Nelson K, M Stumpf R, Knight R, R Leigh S.

ISME J. 2019 Mar;13(3):576-587. doi: 10.1038/s41396-018-0175-0. Epub 2018 Jul 11.

PMID:
29995839
8.

The microbial reproductive ecology of white-faced capuchins (Cebus capucinus).

Mallott EK, Amato KR.

Am J Primatol. 2018 Aug;80(8):e22896. doi: 10.1002/ajp.22896. Epub 2018 Jul 9.

PMID:
29984842
9.

Influence of fruit and invertebrate consumption on the gut microbiota of wild white-faced capuchins (Cebus capucinus).

Mallott EK, Amato KR, Garber PA, Malhi RS.

Am J Phys Anthropol. 2018 Mar;165(3):576-588. doi: 10.1002/ajpa.23395. Epub 2018 Jan 4.

PMID:
29313897
10.

The human microbiome in evolution.

Davenport ER, Sanders JG, Song SJ, Amato KR, Clark AG, Knight R.

BMC Biol. 2017 Dec 27;15(1):127. doi: 10.1186/s12915-017-0454-7. Review.

11.

The Effects of Captivity on the Mammalian Gut Microbiome.

McKenzie VJ, Song SJ, Delsuc F, Prest TL, Oliverio AM, Korpita TM, Alexiev A, Amato KR, Metcalf JL, Kowalewski M, Avenant NL, Link A, Di Fiore A, Seguin-Orlando A, Feh C, Orlando L, Mendelson JR, Sanders J, Knight R.

Integr Comp Biol. 2017 Oct 1;57(4):690-704. doi: 10.1093/icb/icx090.

12.

Erratum to: Diet Versus Phylogeny: a Comparison of Gut Microbiota in Captive Colobine Monkey Species.

Hale VL, Tan CL, Niu K, Yang Y, Knight R, Zhang Q, Cui D, Amato KR.

Microb Ecol. 2018 Feb;75(2):528. doi: 10.1007/s00248-017-1070-3. No abstract available.

PMID:
28894881
13.

Patterns of seasonality and group membership characterize the gut microbiota in a longitudinal study of wild Verreaux's sifakas (Propithecus verreauxi).

Springer A, Fichtel C, Al-Ghalith GA, Koch F, Amato KR, Clayton JB, Knights D, Kappeler PM.

Ecol Evol. 2017 Jun 15;7(15):5732-5745. doi: 10.1002/ece3.3148. eCollection 2017 Aug.

14.

Diet Versus Phylogeny: a Comparison of Gut Microbiota in Captive Colobine Monkey Species.

Hale VL, Tan CL, Niu K, Yang Y, Knight R, Zhang Q, Cui D, Amato KR.

Microb Ecol. 2018 Feb;75(2):515-527. doi: 10.1007/s00248-017-1041-8. Epub 2017 Jul 22. Erratum in: Microb Ecol. 2017 Sep 11;:.

PMID:
28735426
15.

Patterns in Gut Microbiota Similarity Associated with Degree of Sociality among Sex Classes of a Neotropical Primate.

Amato KR, Van Belle S, Di Fiore A, Estrada A, Stumpf R, White B, Nelson KE, Knight R, Leigh SR.

Microb Ecol. 2017 Jul;74(1):250-258. doi: 10.1007/s00248-017-0938-6. Epub 2017 Jan 26.

PMID:
28124727
16.

Impending extinction crisis of the world's primates: Why primates matter.

Estrada A, Garber PA, Rylands AB, Roos C, Fernandez-Duque E, Di Fiore A, Nekaris KA, Nijman V, Heymann EW, Lambert JE, Rovero F, Barelli C, Setchell JM, Gillespie TR, Mittermeier RA, Arregoitia LV, de Guinea M, Gouveia S, Dobrovolski R, Shanee S, Shanee N, Boyle SA, Fuentes A, MacKinnon KC, Amato KR, Meyer AL, Wich S, Sussman RW, Pan R, Kone I, Li B.

Sci Adv. 2017 Jan 18;3(1):e1600946. doi: 10.1126/sciadv.1600946. eCollection 2017 Jan. Review.

17.

Metabolomic data suggest regulation of black howler monkey (Alouatta pigra) diet composition at the molecular level.

Amato KR, Ulanov A, Ju KS, Garber PA.

Am J Primatol. 2017 Apr;79(4):1-10. doi: 10.1002/ajp.22616. Epub 2016 Dec 9.

PMID:
27936282
18.

Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies.

Song SJ, Amir A, Metcalf JL, Amato KR, Xu ZZ, Humphrey G, Knight R.

mSystems. 2016 May 3;1(3). pii: e00021-16. eCollection 2016 May-Jun.

19.

An introduction to microbiome analysis for human biology applications.

Amato KR.

Am J Hum Biol. 2017 Jan;29(1). doi: 10.1002/ajhb.22931. Epub 2016 Oct 20.

PMID:
27762069
20.

Effects of field conditions on fecal microbiota.

Hale VL, Tan CL, Niu K, Yang Y, Cui D, Zhao H, Knight R, Amato KR.

J Microbiol Methods. 2016 Nov;130:180-188. doi: 10.1016/j.mimet.2016.09.017. Epub 2016 Sep 26.

PMID:
27686380
21.

Host age, social group, and habitat type influence the gut microbiota of wild ring-tailed lemurs (Lemur catta).

Bennett G, Malone M, Sauther ML, Cuozzo FP, White B, Nelson KE, Stumpf RM, Knight R, Leigh SR, Amato KR.

Am J Primatol. 2016 Aug;78(8):883-92. doi: 10.1002/ajp.22555. Epub 2016 May 13.

PMID:
27177345
22.

Human metapneumovirus small hydrophobic (SH) protein downregulates type I IFN pathway signaling by affecting STAT1 expression and phosphorylation.

Hastings AK, Amato KR, Wen SC, Peterson LS, Williams JV.

Virology. 2016 Jul;494:248-56. doi: 10.1016/j.virol.2016.04.022. Epub 2016 Apr 27.

23.

Gut Microbiome of Coexisting BaAka Pygmies and Bantu Reflects Gradients of Traditional Subsistence Patterns.

Gomez A, Petrzelkova KJ, Burns MB, Yeoman CJ, Amato KR, Vlckova K, Modry D, Todd A, Jost Robinson CA, Remis MJ, Torralba MG, Morton E, UmaƱa JD, Carbonero F, Gaskins HR, Nelson KE, Wilson BA, Stumpf RM, White BA, Leigh SR, Blekhman R.

Cell Rep. 2016 Mar 8;14(9):2142-2153. doi: 10.1016/j.celrep.2016.02.013. Epub 2016 Feb 25.

24.

Incorporating the gut microbiota into models of human and non-human primate ecology and evolution.

Amato KR.

Am J Phys Anthropol. 2016 Jan;159(Suppl 61):S196-215. doi: 10.1002/ajpa.22908. Review.

PMID:
26808106
25.

EPHA2 Blockade Overcomes Acquired Resistance to EGFR Kinase Inhibitors in Lung Cancer.

Amato KR, Wang S, Tan L, Hastings AK, Song W, Lovly CM, Meador CB, Ye F, Lu P, Balko JM, Colvin DC, Cates JM, Pao W, Gray NS, Chen J.

Cancer Res. 2016 Jan 15;76(2):305-18. doi: 10.1158/0008-5472.CAN-15-0717. Epub 2016 Jan 7.

26.

Phylogenetic and ecological factors impact the gut microbiota of two Neotropical primate species.

Amato KR, Martinez-Mota R, Righini N, Raguet-Schofield M, Corcione FP, Marini E, Humphrey G, Gogul G, Gaffney J, Lovelace E, Williams L, Luong A, Dominguez-Bello MG, Stumpf RM, White B, Nelson KE, Knight R, Leigh SR.

Oecologia. 2016 Mar;180(3):717-33. doi: 10.1007/s00442-015-3507-z. Epub 2015 Nov 24.

PMID:
26597549
27.

Variable responses of human and non-human primate gut microbiomes to a Western diet.

Amato KR, Yeoman CJ, Cerda G, Schmitt CA, Cramer JD, Miller ME, Gomez A, Turner TR, Wilson BA, Stumpf RM, Nelson KE, White BA, Knight R, Leigh SR.

Microbiome. 2015 Nov 16;3:53. doi: 10.1186/s40168-015-0120-7.

28.

Effect of preservation method on spider monkey (Ateles geoffroyi) fecal microbiota over 8 weeks.

Hale VL, Tan CL, Knight R, Amato KR.

J Microbiol Methods. 2015 Jun;113:16-26. doi: 10.1016/j.mimet.2015.03.021. Epub 2015 Mar 27.

PMID:
25819008
29.

Regulation of endothelial cell proliferation and vascular assembly through distinct mTORC2 signaling pathways.

Wang S, Amato KR, Song W, Youngblood V, Lee K, Boothby M, Brantley-Sieders DM, Chen J.

Mol Cell Biol. 2015 Apr;35(7):1299-313. doi: 10.1128/MCB.00306-14. Epub 2015 Jan 12.

30.

The gut microbiota appears to compensate for seasonal diet variation in the wild black howler monkey (Alouatta pigra).

Amato KR, Leigh SR, Kent A, Mackie RI, Yeoman CJ, Stumpf RM, Wilson BA, Nelson KE, White BA, Garber PA.

Microb Ecol. 2015 Feb;69(2):434-43. doi: 10.1007/s00248-014-0554-7. Epub 2014 Dec 19.

PMID:
25524570
31.

The role of gut microbes in satisfying the nutritional demands of adult and juvenile wild, black howler monkeys (Alouatta pigra).

Amato KR, Leigh SR, Kent A, Mackie RI, Yeoman CJ, Stumpf RM, Wilson BA, Nelson KE, White BA, Garber PA.

Am J Phys Anthropol. 2014 Dec;155(4):652-64. doi: 10.1002/ajpa.22621. Epub 2014 Sep 23.

PMID:
25252073
32.

Nutrition and foraging strategies of the black howler monkey (Alouatta pigra) in Palenque National Park, Mexico.

Amato KR, Garber PA.

Am J Primatol. 2014 Aug;76(8):774-87. doi: 10.1002/ajp.22268. Epub 2014 Apr 24.

PMID:
24763976
33.

Genetic and pharmacologic inhibition of EPHA2 promotes apoptosis in NSCLC.

Amato KR, Wang S, Hastings AK, Youngblood VM, Santapuram PR, Chen H, Cates JM, Colvin DC, Ye F, Brantley-Sieders DM, Cook RS, Tan L, Gray NS, Chen J.

J Clin Invest. 2014 May;124(5):2037-49. doi: 10.1172/JCI72522. Epub 2014 Apr 8.

34.

A comparison of scan and focal sampling for the description of wild primate activity, diet and intragroup spatial relationships.

Amato KR, Van Belle S, Wilkinson B.

Folia Primatol (Basel). 2013;84(2):87-101. doi: 10.1159/000348305. Epub 2013 Mar 28.

PMID:
23548732
35.

Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes.

Amato KR, Yeoman CJ, Kent A, Righini N, Carbonero F, Estrada A, Gaskins HR, Stumpf RM, Yildirim S, Torralba M, Gillis M, Wilson BA, Nelson KE, White BA, Leigh SR.

ISME J. 2013 Jul;7(7):1344-53. doi: 10.1038/ismej.2013.16. Epub 2013 Mar 14.

36.

Optimization of dosing for EGFR-mutant non-small cell lung cancer with evolutionary cancer modeling.

Chmielecki J, Foo J, Oxnard GR, Hutchinson K, Ohashi K, Somwar R, Wang L, Amato KR, Arcila M, Sos ML, Socci ND, Viale A, de Stanchina E, Ginsberg MS, Thomas RK, Kris MG, Inoue A, Ladanyi M, Miller VA, Michor F, Pao W.

Sci Transl Med. 2011 Jul 6;3(90):90ra59. doi: 10.1126/scitranslmed.3002356.

37.

Analysis of the hydrogenotrophic microbiota of wild and captive black howler monkeys (Alouatta pigra) in palenque national park, Mexico.

Nakamura N, Amato KR, Garber P, Estrada A, Mackie RI, Gaskins HR.

Am J Primatol. 2011 Sep;73(9):909-19. doi: 10.1002/ajp.20961. Epub 2011 May 9.

PMID:
21557284
38.

Combination chemotherapy in relapsed childhood acute lymphoblastic leukemia.

Amato KR, Sallan SE, Lipton JM.

Cancer Treat Rep. 1984 Feb;68(2):411-2.

PMID:
6583001

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