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Items: 36

1.

In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes.

Krüger K, Chafee M, Ben Francis T, Glavina Del Rio T, Becher D, Schweder T, Amann RI, Teeling H.

ISME J. 2019 Jul 17. doi: 10.1038/s41396-019-0476-y. [Epub ahead of print]

PMID:
31316134
2.

Consent insufficient for data release-Response.

Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I.

Science. 2019 May 3;364(6439):446. doi: 10.1126/science.aax7509. No abstract available.

PMID:
31048484
3.

Toward unrestricted use of public genomic data.

Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I.

Science. 2019 Jan 25;363(6425):350-352. doi: 10.1126/science.aaw1280. No abstract available.

4.

Alpha- and beta-mannan utilization by marine Bacteroidetes.

Chen J, Robb CS, Unfried F, Kappelmann L, Markert S, Song T, Harder J, Avcı B, Becher D, Xie P, Amann RI, Hehemann JH, Schweder T, Teeling H.

Environ Microbiol. 2018 Nov;20(11):4127-4140. doi: 10.1111/1462-2920.14414. Epub 2018 Oct 16.

PMID:
30246424
5.

Candidatus Prosiliicoccus vernus, a spring phytoplankton bloom associated member of the Flavobacteriaceae.

Francis TB, Krüger K, Fuchs BM, Teeling H, Amann RI.

Syst Appl Microbiol. 2019 Jan;42(1):41-53. doi: 10.1016/j.syapm.2018.08.007. Epub 2018 Aug 20.

PMID:
30193855
6.

Polysaccharide utilization loci of North Sea Flavobacteriia as basis for using SusC/D-protein expression for predicting major phytoplankton glycans.

Kappelmann L, Krüger K, Hehemann JH, Harder J, Markert S, Unfried F, Becher D, Shapiro N, Schweder T, Amann RI, Teeling H.

ISME J. 2019 Jan;13(1):76-91. doi: 10.1038/s41396-018-0242-6. Epub 2018 Aug 15.

7.

Adaptive mechanisms that provide competitive advantages to marine bacteroidetes during microalgal blooms.

Unfried F, Becker S, Robb CS, Hehemann JH, Markert S, Heiden SE, Hinzke T, Becher D, Reintjes G, Krüger K, Avcı B, Kappelmann L, Hahnke RL, Fischer T, Harder J, Teeling H, Fuchs B, Barbeyron T, Amann RI, Schweder T.

ISME J. 2018 Dec;12(12):2894-2906. doi: 10.1038/s41396-018-0243-5. Epub 2018 Jul 30.

8.

Recurrent patterns of microdiversity in a temperate coastal marine environment.

Chafee M, Fernàndez-Guerra A, Buttigieg PL, Gerdts G, Eren AM, Teeling H, Amann RI.

ISME J. 2018 Jan;12(1):237-252. doi: 10.1038/ismej.2017.165. Epub 2017 Oct 24.

9.

Genomic and physiological analyses of 'Reinekea forsetii' reveal a versatile opportunistic lifestyle during spring algae blooms.

Avcı B, Hahnke RL, Chafee M, Fischer T, Gruber-Vodicka H, Tegetmeyer HE, Harder J, Fuchs BM, Amann RI, Teeling H.

Environ Microbiol. 2017 Mar;19(3):1209-1221. doi: 10.1111/1462-2920.13646. Epub 2017 Feb 3.

PMID:
28000419
10.

Description of Gramella forsetii sp. nov., a marine Flavobacteriaceae isolated from North Sea water, and emended description of Gramella gaetbulicola Cho et al. 2011.

Panschin I, Becher M, Verbarg S, Spröer C, Rohde M, Schüler M, Amann RI, Harder J, Tindall BJ, Hahnke RL.

Int J Syst Evol Microbiol. 2017 Mar;67(3):697-703. doi: 10.1099/ijsem.0.001700. Epub 2017 Apr 3.

PMID:
27902319
11.

Polysaccharide utilisation loci of Bacteroidetes from two contrasting open ocean sites in the North Atlantic.

Bennke CM, Krüger K, Kappelmann L, Huang S, Gobet A, Schüler M, Barbe V, Fuchs BM, Michel G, Teeling H, Amann RI.

Environ Microbiol. 2016 Dec;18(12):4456-4470. doi: 10.1111/1462-2920.13429. Epub 2016 Jul 18.

PMID:
27348854
12.

Recurring patterns in bacterioplankton dynamics during coastal spring algae blooms.

Teeling H, Fuchs BM, Bennke CM, Krüger K, Chafee M, Kappelmann L, Reintjes G, Waldmann J, Quast C, Glöckner FO, Lucas J, Wichels A, Gerdts G, Wiltshire KH, Amann RI.

Elife. 2016 Apr 7;5:e11888. doi: 10.7554/eLife.11888.

13.

The effect of nutrients on carbon and nitrogen fixation by the UCYN-A-haptophyte symbiosis.

Krupke A, Mohr W, LaRoche J, Fuchs BM, Amann RI, Kuypers MM.

ISME J. 2015 Jul;9(7):1635-47. doi: 10.1038/ismej.2014.253. Epub 2014 Dec 23.

14.

Niches of two polysaccharide-degrading Polaribacter isolates from the North Sea during a spring diatom bloom.

Xing P, Hahnke RL, Unfried F, Markert S, Huang S, Barbeyron T, Harder J, Becher D, Schweder T, Glöckner FO, Amann RI, Teeling H.

ISME J. 2015 Jun;9(6):1410-22. doi: 10.1038/ismej.2014.225. Epub 2014 Dec 5.

15.

Distribution of a consortium between unicellular algae and the N2 fixing cyanobacterium UCYN-A in the North Atlantic Ocean.

Krupke A, Lavik G, Halm H, Fuchs BM, Amann RI, Kuypers MM.

Environ Microbiol. 2014 Oct;16(10):3153-67. doi: 10.1111/1462-2920.12431. Epub 2014 Apr 17.

PMID:
24612325
16.

Functional characterization of polysaccharide utilization loci in the marine Bacteroidetes 'Gramella forsetii' KT0803.

Kabisch A, Otto A, König S, Becher D, Albrecht D, Schüler M, Teeling H, Amann RI, Schweder T.

ISME J. 2014 Jul;8(7):1492-502. doi: 10.1038/ismej.2014.4. Epub 2014 Feb 13.

17.

Evaluation of the 23S rRNA gene as target for qPCR based quantification of Frankia in soils.

Samant S, Amann RI, Hahn D.

Syst Appl Microbiol. 2014 May;37(3):229-34. doi: 10.1016/j.syapm.2013.11.001. Epub 2013 Dec 4.

PMID:
24315016
18.

The genome of the alga-associated marine flavobacterium Formosa agariphila KMM 3901T reveals a broad potential for degradation of algal polysaccharides.

Mann AJ, Hahnke RL, Huang S, Werner J, Xing P, Barbeyron T, Huettel B, Stüber K, Reinhardt R, Harder J, Glöckner FO, Amann RI, Teeling H.

Appl Environ Microbiol. 2013 Nov;79(21):6813-22. doi: 10.1128/AEM.01937-13. Epub 2013 Aug 30.

19.

In situ identification and N₂ and C fixation rates of uncultivated cyanobacteria populations.

Krupke A, Musat N, Laroche J, Mohr W, Fuchs BM, Amann RI, Kuypers MM, Foster RA.

Syst Appl Microbiol. 2013 Jun;36(4):259-71. doi: 10.1016/j.syapm.2013.02.002. Epub 2013 Mar 27.

PMID:
23541027
20.

Whole genome analysis of the marine Bacteroidetes'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter.

Bauer M, Kube M, Teeling H, Richter M, Lombardot T, Allers E, Würdemann CA, Quast C, Kuhl H, Knaust F, Woebken D, Bischof K, Mussmann M, Choudhuri JV, Meyer F, Reinhardt R, Amann RI, Glöckner FO.

Environ Microbiol. 2006 Dec;8(12):2201-13.

PMID:
17107561
21.

Archaea-like genes for C1-transfer enzymes in Planctomycetes: phylogenetic implications of their unexpected presence in this phylum.

Bauer M, Lombardot T, Teeling H, Ward NL, Amann RI, Glöckner FO.

J Mol Evol. 2004 Nov;59(5):571-86.

PMID:
15693614
22.

Phylogeny and distribution of nitrate-storing Beggiatoa spp. in coastal marine sediments.

Mussmann M, Schulz HN, Strotmann B, Kjaer T, Nielsen LP, Rosselló-Mora RA, Amann RI, Jørgensen BB.

Environ Microbiol. 2003 Jun;5(6):523-33.

PMID:
12755720
23.
24.

Identification and in situ detection of intracellular bacteria in the environment.

Brand BC, Amann RI, Steinert M, Grimm D, Hacker J.

Subcell Biochem. 2000;33:601-24. Review. No abstract available.

PMID:
10804871
25.

Specific detection of Candida albicans and Candida tropicalis by fluorescent in situ hybridization with an 18S rRNA-targeted oligonucleotide probe.

Lischewski A, Amann RI, Harmsen D, Merkert H, Hacker J, Morschhäuser J.

Microbiology. 1996 Oct;142 ( Pt 10):2731-40.

PMID:
8885388
26.

Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis.

Nübel U, Engelen B, Felske A, Snaidr J, Wieshuber A, Amann RI, Ludwig W, Backhaus H.

J Bacteriol. 1996 Oct;178(19):5636-43.

27.

Phylogenetic identification and in situ detection of individual microbial cells without cultivation.

Amann RI, Ludwig W, Schleifer KH.

Microbiol Rev. 1995 Mar;59(1):143-69. Review.

28.
29.

Detection of mRNA in streptomyces cells by whole-cell hybridization with digoxigenin-labeled probes.

Hahn D, Amann RI, Zeyer J.

Appl Environ Microbiol. 1993 Aug;59(8):2753-7.

30.
31.

Identification of individual prokaryotic cells by using enzyme-labeled, rRNA-targeted oligonucleotide probes.

Amann RI, Zarda B, Stahl DA, Schleifer KH.

Appl Environ Microbiol. 1992 Sep;58(9):3007-11.

33.

Detection of micro-organisms in soil after in situ hybridization with rRNA-targeted, fluorescently labelled oligonucleotides.

Hahn D, Amann RI, Ludwig W, Akkermans AD, Schleifer KH.

J Gen Microbiol. 1992 May;138(5):879-87.

PMID:
1379623
34.

Molecular and microscopic identification of sulfate-reducing bacteria in multispecies biofilms.

Amann RI, Stromley J, Devereux R, Key R, Stahl DA.

Appl Environ Microbiol. 1992 Feb;58(2):614-23.

35.

Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations.

Amann RI, Binder BJ, Olson RJ, Chisholm SW, Devereux R, Stahl DA.

Appl Environ Microbiol. 1990 Jun;56(6):1919-25.

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