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Items: 1 to 50 of 587

1.

Niche differentiation among annually recurrent coastal Marine Group II Euryarchaeota.

Orellana LH, Ben Francis T, Krüger K, Teeling H, Müller MC, Fuchs BM, Konstantinidis KT, Amann RI.

ISME J. 2019 Aug 26. doi: 10.1038/s41396-019-0491-z. [Epub ahead of print]

PMID:
31447484
2.

Predominance of deterministic microbial community dynamics in salterns exposed to different light intensities.

Viver T, Orellana LH, Díaz S, Urdiain M, Ramos-Barbero MD, González-Pastor JE, Oren A, Hatt JK, Amann R, Antón J, Konstantinidis KT, Rosselló-Móra R.

Environ Microbiol. 2019 Aug 24. doi: 10.1111/1462-2920.14790. [Epub ahead of print]

PMID:
31444990
3.

In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes.

Krüger K, Chafee M, Ben Francis T, Glavina Del Rio T, Becher D, Schweder T, Amann RI, Teeling H.

ISME J. 2019 Jul 17. doi: 10.1038/s41396-019-0476-y. [Epub ahead of print]

PMID:
31316134
4.

In situ abundance and carbon fixation activity of distinct anoxygenic phototrophs in the stratified seawater lake Rogoznica.

Pjevac P, Dyksma S, Goldhammer T, Mujakić I, Koblížek M, Mußmann M, Amann R, Orlić S.

Environ Microbiol. 2019 Jul 12. doi: 10.1111/1462-2920.14739. [Epub ahead of print]

PMID:
31299137
5.

On-Site Analysis of Bacterial Communities of the Ultraoligotrophic South Pacific Gyre.

Reintjes G, Tegetmeyer HE, Bürgisser M, Orlić S, Tews I, Zubkov M, Voß D, Zielinski O, Quast C, Glöckner FO, Amann R, Ferdelman TG, Fuchs BM.

Appl Environ Microbiol. 2019 Jul 1;85(14). pii: e00184-19. doi: 10.1128/AEM.00184-19. Print 2019 Jul 15.

PMID:
31076426
6.

First description of two moderately halophilic and psychrotolerant Mycoplasma species isolated from cephalopods and proposal of Mycoplasma marinum sp. nov. and Mycoplasma todarodis sp. nov.

Ramírez AS, Vega-Orellana OM, Viver T, Poveda JB, Rosales RS, Poveda CG, Spergser J, Szostak MP, Caballero MJ, Ressel L, Bradbury JM, Mar Tavío M, Karthikeyan S, Amann R, Konstantinidis KT, Rossello-Mora R.

Syst Appl Microbiol. 2019 Jul;42(4):457-467. doi: 10.1016/j.syapm.2019.04.003. Epub 2019 Apr 12.

PMID:
31072660
7.

Consent insufficient for data release-Response.

Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I.

Science. 2019 May 3;364(6439):446. doi: 10.1126/science.aax7509. No abstract available.

PMID:
31048484
8.

Children's Transport Built Environments: A Mixed Methods Study of Associations between Perceived and Objective Measures and Relationships with Parent Licence for Independent Mobility in Auckland, New Zealand.

Smith M, Amann R, Cavadino A, Raphael D, Kearns R, Mackett R, Mackay L, Carroll P, Forsyth E, Mavoa S, Zhao J, Ikeda E, Witten K.

Int J Environ Res Public Health. 2019 Apr 16;16(8). pii: E1361. doi: 10.3390/ijerph16081361.

9.

A systematic follow-up protocol achieving a low hemodialysis graft thrombosis rate.

Caro Acevedo P, Marchante R, Thuissard IJ, Sanz-Rosa D, Amann R, Hernandez B, Delgado R.

J Vasc Access. 2019 Apr 19:1129729819838795. doi: 10.1177/1129729819838795. [Epub ahead of print]

PMID:
31002279
10.

Single cell fluorescence imaging of glycan uptake by intestinal bacteria.

Hehemann JH, Reintjes G, Klassen L, Smith AD, Ndeh D, Arnosti C, Amann R, Abbott DW.

ISME J. 2019 Jul;13(7):1883-1889. doi: 10.1038/s41396-019-0406-z. Epub 2019 Apr 1.

PMID:
30936421
11.

Genomic Characterization of Orf Virus Strain D1701-V (Parapoxvirus) and Development of Novel Sites for Multiple Transgene Expression.

Rziha HJ, Büttner M, Müller M, Salomon F, Reguzova A, Laible D, Amann R.

Viruses. 2019 Jan 30;11(2). pii: E127. doi: 10.3390/v11020127.

12.

Toward unrestricted use of public genomic data.

Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I.

Science. 2019 Jan 25;363(6425):350-352. doi: 10.1126/science.aaw1280. No abstract available.

13.

Microbial metal-sulfide oxidation in inactive hydrothermal vent chimneys suggested by metagenomic and metaproteomic analyses.

Meier DV, Pjevac P, Bach W, Markert S, Schweder T, Jamieson J, Petersen S, Amann R, Meyerdierks A.

Environ Microbiol. 2019 Feb;21(2):682-701. doi: 10.1111/1462-2920.14514. Epub 2019 Jan 21.

PMID:
30585382
14.

Moving the cataloguing of the "uncultivated majority" forward.

Konstantinidis KT, Rossello-Mora R, Amann R.

Syst Appl Microbiol. 2019 Jan;42(1):3-4. doi: 10.1016/j.syapm.2018.12.001. Epub 2018 Dec 10. No abstract available.

PMID:
30558959
15.

Selfish, sharing and scavenging bacteria in the Atlantic Ocean: a biogeographical study of bacterial substrate utilisation.

Reintjes G, Arnosti C, Fuchs B, Amann R.

ISME J. 2019 May;13(5):1119-1132. doi: 10.1038/s41396-018-0326-3. Epub 2018 Dec 7.

PMID:
30531893
16.

Alpha- and beta-mannan utilization by marine Bacteroidetes.

Chen J, Robb CS, Unfried F, Kappelmann L, Markert S, Song T, Harder J, Avcı B, Becher D, Xie P, Amann RI, Hehemann JH, Schweder T, Teeling H.

Environ Microbiol. 2018 Nov;20(11):4127-4140. doi: 10.1111/1462-2920.14414. Epub 2018 Oct 16.

PMID:
30246424
17.

Candidatus Prosiliicoccus vernus, a spring phytoplankton bloom associated member of the Flavobacteriaceae.

Francis TB, Krüger K, Fuchs BM, Teeling H, Amann RI.

Syst Appl Microbiol. 2019 Jan;42(1):41-53. doi: 10.1016/j.syapm.2018.08.007. Epub 2018 Aug 20.

PMID:
30193855
18.

Polysaccharide utilization loci of North Sea Flavobacteriia as basis for using SusC/D-protein expression for predicting major phytoplankton glycans.

Kappelmann L, Krüger K, Hehemann JH, Harder J, Markert S, Unfried F, Becher D, Shapiro N, Schweder T, Amann RI, Teeling H.

ISME J. 2019 Jan;13(1):76-91. doi: 10.1038/s41396-018-0242-6. Epub 2018 Aug 15.

19.

Adaptive mechanisms that provide competitive advantages to marine bacteroidetes during microalgal blooms.

Unfried F, Becker S, Robb CS, Hehemann JH, Markert S, Heiden SE, Hinzke T, Becher D, Reintjes G, Krüger K, Avcı B, Kappelmann L, Hahnke RL, Fischer T, Harder J, Teeling H, Fuchs B, Barbeyron T, Amann RI, Schweder T.

ISME J. 2018 Dec;12(12):2894-2906. doi: 10.1038/s41396-018-0243-5. Epub 2018 Jul 30.

20.

Metaproteogenomic Profiling of Microbial Communities Colonizing Actively Venting Hydrothermal Chimneys.

Pjevac P, Meier DV, Markert S, Hentschker C, Schweder T, Becher D, Gruber-Vodicka HR, Richter M, Bach W, Amann R, Meyerdierks A.

Front Microbiol. 2018 Apr 6;9:680. doi: 10.3389/fmicb.2018.00680. eCollection 2018.

21.

Genomic comparison between members of the Salinibacteraceae family, and description of a new species of Salinibacter (Salinibacter altiplanensis sp. nov.) isolated from high altitude hypersaline environments of the Argentinian Altiplano.

Viver T, Orellana L, González-Torres P, Díaz S, Urdiain M, Farías ME, Benes V, Kaempfer P, Shahinpei A, Ali Amoozegar M, Amann R, Antón J, Konstantinidis KT, Rosselló-Móra R.

Syst Appl Microbiol. 2018 May;41(3):198-212. doi: 10.1016/j.syapm.2017.12.004. Epub 2018 Jan 31.

PMID:
29429564
22.

Reply to the commentary "Uncultivated microbes-in need of their own nomenclature?"

Konstantinidis KT, Rosselló-Móra R, Amann R.

ISME J. 2018 Mar;12(3):653-654. doi: 10.1038/s41396-017-0011-y. Epub 2018 Jan 15. No abstract available.

23.

Microbial life on a sand grain: from bulk sediment to single grains.

Probandt D, Eickhorst T, Ellrott A, Amann R, Knittel K.

ISME J. 2018 Feb;12(2):623-633. doi: 10.1038/ismej.2017.197. Epub 2017 Dec 1.

24.

Measuring Male-to-Male Differences in Fertility or Effects of Semen Treatments.

Amann RP, Saacke RG, Barbato GF, Waberski D.

Annu Rev Anim Biosci. 2018 Feb 15;6:255-286. doi: 10.1146/annurev-animal-030117-014829. Epub 2017 Nov 13. Review.

PMID:
29131658
25.

Recurrent patterns of microdiversity in a temperate coastal marine environment.

Chafee M, Fernàndez-Guerra A, Buttigieg PL, Gerdts G, Eren AM, Teeling H, Amann RI.

ISME J. 2018 Jan;12(1):237-252. doi: 10.1038/ismej.2017.165. Epub 2017 Oct 24.

26.

Uncultivated microbes in need of their own taxonomy.

Konstantinidis KT, Rosselló-Móra R, Amann R.

ISME J. 2017 Nov;11(11):2399-2406. doi: 10.1038/ismej.2017.113. Epub 2017 Jul 21.

27.

Microbial Community Response to Simulated Petroleum Seepage in Caspian Sea Sediments.

Stagars MH, Mishra S, Treude T, Amann R, Knittel K.

Front Microbiol. 2017 Apr 28;8:764. doi: 10.3389/fmicb.2017.00764. eCollection 2017.

28.

Long-term outcome of paediatric flexor tendon injuries of the hand.

Singer G, Zwetti T, Amann R, Castellani C, Till H, Schmidt B.

J Plast Reconstr Aesthet Surg. 2017 Jul;70(7):908-913. doi: 10.1016/j.bjps.2017.03.014. Epub 2017 Apr 8.

PMID:
28461087
29.

The low diverse gastric microbiome of the jellyfish Cotylorhiza tuberculata is dominated by four novel taxa.

Viver T, Orellana LH, Hatt JK, Urdiain M, Díaz S, Richter M, Antón J, Avian M, Amann R, Konstantinidis KT, Rosselló-Móra R.

Environ Microbiol. 2017 Aug;19(8):3039-3058. doi: 10.1111/1462-2920.13763. Epub 2017 May 11.

PMID:
28419691
30.

Determining the bacterial cell biology of Planctomycetes.

Boedeker C, Schüler M, Reintjes G, Jeske O, van Teeseling MC, Jogler M, Rast P, Borchert D, Devos DP, Kucklick M, Schaffer M, Kolter R, van Niftrik L, Engelmann S, Amann R, Rohde M, Engelhardt H, Jogler C.

Nat Commun. 2017 Apr 10;8:14853. doi: 10.1038/ncomms14853. Review.

31.

Corrigendum to "Revised phylogeny of Bacteroidetes and proposal of sixteen new taxa and two new combinations including Rhodothermaeota phyl. nov" [Syst. Appl. Microbiol. 39 (7) (2016) 491-492].

Munoz R, Rosselló-Móra R, Amann R.

Syst Appl Microbiol. 2017 Apr;40(3):190. doi: 10.1016/j.syapm.2017.03.001. No abstract available.

PMID:
28391801
32.

Niche partitioning of diverse sulfur-oxidizing bacteria at hydrothermal vents.

Meier DV, Pjevac P, Bach W, Hourdez S, Girguis PR, Vidoudez C, Amann R, Meyerdierks A.

ISME J. 2017 Jul;11(7):1545-1558. doi: 10.1038/ismej.2017.37. Epub 2017 Apr 4.

33.

An alternative polysaccharide uptake mechanism of marine bacteria.

Reintjes G, Arnosti C, Fuchs BM, Amann R.

ISME J. 2017 Jul;11(7):1640-1650. doi: 10.1038/ismej.2017.26. Epub 2017 Mar 21.

34.

Aquatic adaptation of a laterally acquired pectin degradation pathway in marine gammaproteobacteria.

Hehemann JH, Truong LV, Unfried F, Welsch N, Kabisch J, Heiden SE, Junker S, Becher D, Thürmer A, Daniel R, Amann R, Schweder T.

Environ Microbiol. 2017 Jun;19(6):2320-2333. doi: 10.1111/1462-2920.13726. Epub 2017 Apr 3.

PMID:
28276126
35.

Permeability shapes bacterial communities in sublittoral surface sediments.

Probandt D, Knittel K, Tegetmeyer HE, Ahmerkamp S, Holtappels M, Amann R.

Environ Microbiol. 2017 Apr;19(4):1584-1599. doi: 10.1111/1462-2920.13676. Epub 2017 Feb 7.

PMID:
28120371
36.

Genomic and physiological analyses of 'Reinekea forsetii' reveal a versatile opportunistic lifestyle during spring algae blooms.

Avcı B, Hahnke RL, Chafee M, Fischer T, Gruber-Vodicka H, Tegetmeyer HE, Harder J, Fuchs BM, Amann RI, Teeling H.

Environ Microbiol. 2017 Mar;19(3):1209-1221. doi: 10.1111/1462-2920.13646. Epub 2017 Feb 3.

PMID:
28000419
37.

Description of Gramella forsetii sp. nov., a marine Flavobacteriaceae isolated from North Sea water, and emended description of Gramella gaetbulicola Cho et al. 2011.

Panschin I, Becher M, Verbarg S, Spröer C, Rohde M, Schüler M, Amann RI, Harder J, Tindall BJ, Hahnke RL.

Int J Syst Evol Microbiol. 2017 Mar;67(3):697-703. doi: 10.1099/ijsem.0.001700. Epub 2017 Apr 3.

PMID:
27902319
38.

Habitat and taxon as driving forces of carbohydrate catabolism in marine heterotrophic bacteria: example of the model algae-associated bacterium Zobellia galactanivorans DsijT.

Barbeyron T, Thomas F, Barbe V, Teeling H, Schenowitz C, Dossat C, Goesmann A, Leblanc C, Oliver Glöckner F, Czjzek M, Amann R, Michel G.

Environ Microbiol. 2016 Dec;18(12):4610-4627. doi: 10.1111/1462-2920.13584. Epub 2016 Nov 13.

PMID:
27768819
39.

Reply to "The Underestimation of Global Microbial Diversity".

Amann R, Rossello-Mora R.

MBio. 2016 Sep 27;7(5). pii: e01623-16. doi: 10.1128/mBio.01623-16. No abstract available.

40.

Corrigendum to "Revised phylogeny of Bacteroidetes and proposal of sixteen new taxa and two new combinations including Rhodothermaeota phyl. nov." [Syst. Appl. Microbiol. 39 (5) (2016) 281-296].

Munoz R, Rosselló-Móra R, Amann R.

Syst Appl Microbiol. 2016 Oct;39(7):491-492. doi: 10.1016/j.syapm.2016.08.006. Epub 2016 Sep 14. No abstract available. Erratum in: Syst Appl Microbiol. 2017 Apr;40(3):190.

PMID:
27639921
41.

After All, Only Millions?

Amann R, Rosselló-Móra R.

MBio. 2016 Jul 5;7(4). pii: e00999-16. doi: 10.1128/mBio.00999-16.

42.

Polysaccharide utilisation loci of Bacteroidetes from two contrasting open ocean sites in the North Atlantic.

Bennke CM, Krüger K, Kappelmann L, Huang S, Gobet A, Schüler M, Barbe V, Fuchs BM, Michel G, Teeling H, Amann RI.

Environ Microbiol. 2016 Dec;18(12):4456-4470. doi: 10.1111/1462-2920.13429. Epub 2016 Jul 18.

PMID:
27348854
43.

Direct-geneFISH: a simplified protocol for the simultaneous detection and quantification of genes and rRNA in microorganisms.

Barrero-Canosa J, Moraru C, Zeugner L, Fuchs BM, Amann R.

Environ Microbiol. 2017 Jan;19(1):70-82. doi: 10.1111/1462-2920.13432. Epub 2016 Jul 18.

PMID:
27348074
44.

Revised phylogeny of Bacteroidetes and proposal of sixteen new taxa and two new combinations including Rhodothermaeota phyl. nov.

Munoz R, Rosselló-Móra R, Amann R.

Syst Appl Microbiol. 2016 Jul;39(5):281-96. doi: 10.1016/j.syapm.2016.04.004. Epub 2016 May 12. Erratum in: Syst Appl Microbiol. 2016 Oct;39(7):491-492.

PMID:
27287844
45.

Recurring patterns in bacterioplankton dynamics during coastal spring algae blooms.

Teeling H, Fuchs BM, Bennke CM, Krüger K, Chafee M, Kappelmann L, Reintjes G, Waldmann J, Quast C, Glöckner FO, Lucas J, Wichels A, Gerdts G, Wiltshire KH, Amann RI.

Elife. 2016 Apr 7;5:e11888. doi: 10.7554/eLife.11888.

46.

Heterotrophic Proteobacteria in the vicinity of diffuse hydrothermal venting.

Meier DV, Bach W, Girguis PR, Gruber-Vodicka HR, Reeves EP, Richter M, Vidoudez C, Amann R, Meyerdierks A.

Environ Microbiol. 2016 Dec;18(12):4348-4368. doi: 10.1111/1462-2920.13304. Epub 2016 Apr 28.

PMID:
27001712
47.

High Diversity of Anaerobic Alkane-Degrading Microbial Communities in Marine Seep Sediments Based on (1-methylalkyl)succinate Synthase Genes.

Stagars MH, Ruff SE, Amann R, Knittel K.

Front Microbiol. 2016 Jan 7;6:1511. doi: 10.3389/fmicb.2015.01511. eCollection 2015.

48.

Chlamydial seasonal dynamics and isolation of 'Candidatus Neptunochlamydia vexilliferae' from a Tyrrhenian coastal lake.

Pizzetti I, Schulz F, Tyml T, Fuchs BM, Amann R, Horn M, Fazi S.

Environ Microbiol. 2016 Sep;18(8):2405-17. doi: 10.1111/1462-2920.13111. Epub 2015 Dec 21.

PMID:
26530333
49.

Generation and Selection of Orf Virus (ORFV) Recombinants.

Rziha HJ, Rohde J, Amann R.

Methods Mol Biol. 2016;1349:177-200. doi: 10.1007/978-1-4939-3008-1_12.

PMID:
26458837
50.

Rapid and sensitive identification of marine bacteria by an improved in situ DNA hybridization chain reaction (quickHCR-FISH).

Yamaguchi T, Fuchs BM, Amann R, Kawakami S, Kubota K, Hatamoto M, Yamaguchi T.

Syst Appl Microbiol. 2015 Sep;38(6):400-5. doi: 10.1016/j.syapm.2015.06.007. Epub 2015 Jul 13.

PMID:
26215142

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