Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 42

1.

Expression of Phosphofructokinase Is Not Sufficient to Enable Embden-Meyerhof-Parnas Glycolysis in Zymomonas mobilis ZM4.

Felczak MM, Jacobson TB, Ong WK, Amador-Noguez D, TerAvest MA.

Front Microbiol. 2019 Sep 27;10:2270. doi: 10.3389/fmicb.2019.02270. eCollection 2019.

2.

Genome Wide Phosphoproteome Analysis of Zymomonas mobilis Under Anaerobic, Aerobic, and N2-Fixing Conditions.

Tatli M, Hebert AS, Coon JJ, Amador-Noguez D.

Front Microbiol. 2019 Sep 4;10:1986. doi: 10.3389/fmicb.2019.01986. eCollection 2019.

3.

Near-equilibrium glycolysis supports metabolic homeostasis and energy yield.

Park JO, Tanner LB, Wei MH, Khana DB, Jacobson TB, Zhang Z, Rubin SA, Li SH, Higgins MB, Stevenson DM, Amador-Noguez D, Rabinowitz JD.

Nat Chem Biol. 2019 Oct;15(10):1001-1008. doi: 10.1038/s41589-019-0364-9. Epub 2019 Sep 23.

PMID:
31548693
4.

Genetic determinants of gut microbiota composition and bile acid profiles in mice.

Kemis JH, Linke V, Barrett KL, Boehm FJ, Traeger LL, Keller MP, Rabaglia ME, Schueler KL, Stapleton DS, Gatti DM, Churchill GA, Amador-Noguez D, Russell JD, Yandell BS, Broman KW, Coon JJ, Attie AD, Rey FE.

PLoS Genet. 2019 Aug 29;15(8):e1008073. doi: 10.1371/journal.pgen.1008073. eCollection 2019 Aug.

5.

Thermodynamic analysis of the pathway for ethanol production from cellobiose in Clostridium thermocellum.

Dash S, Olson DG, Joshua Chan SH, Amador-Noguez D, Lynd LR, Maranas CD.

Metab Eng. 2019 Sep;55:161-169. doi: 10.1016/j.ymben.2019.06.006. Epub 2019 Jun 17.

PMID:
31220663
6.

Cytochrome P450 Monooxygenase-Mediated Metabolic Utilization of Benzo[a]Pyrene by Aspergillus Species.

Ostrem Loss EM, Lee MK, Wu MY, Martien J, Chen W, Amador-Noguez D, Jefcoate C, Remucal C, Jung S, Kim SC, Yu JH.

MBio. 2019 May 28;10(3). pii: e00558-19. doi: 10.1128/mBio.00558-19.

7.

Metabolic Remodeling during Biofilm Development of Bacillus subtilis.

Pisithkul T, Schroeder JW, Trujillo EA, Yeesin P, Stevenson DM, Chaiamarit T, Coon JJ, Wang JD, Amador-Noguez D.

MBio. 2019 May 21;10(3). pii: e00623-19. doi: 10.1128/mBio.00623-19.

8.

The thermophilic biomass-degrading bacterium Caldicellulosiruptor bescii utilizes two enzymes to oxidize glyceraldehyde 3-phosphate during glycolysis.

Scott IM, Rubinstein GM, Poole FL 2nd, Lipscomb GL, Schut GJ, Williams-Rhaesa AM, Stevenson DM, Amador-Noguez D, Kelly RM, Adams MWW.

J Biol Chem. 2019 Jun 21;294(25):9995-10005. doi: 10.1074/jbc.RA118.007120. Epub 2019 May 16.

PMID:
31097544
9.

2H and 13C metabolic flux analysis elucidates in vivo thermodynamics of the ED pathway in Zymomonas mobilis.

Jacobson TB, Adamczyk PA, Stevenson DM, Regner M, Ralph J, Reed JL, Amador-Noguez D.

Metab Eng. 2019 Jul;54:301-316. doi: 10.1016/j.ymben.2019.05.006. Epub 2019 May 10.

10.

Systems-Level Analysis of Oxygen Exposure in Zymomonas mobilis: Implications for Isoprenoid Production.

Martien JI, Hebert AS, Stevenson DM, Regner MR, Khana DB, Coon JJ, Amador-Noguez D.

mSystems. 2019 Feb 12;4(1). pii: e00284-18. doi: 10.1128/mSystems.00284-18. eCollection 2019 Jan-Feb.

11.

OptSSeq explores enzyme expression and function landscapes to maximize isobutanol production rate.

Ghosh IN, Martien J, Hebert AS, Zhang Y, Coon JJ, Amador-Noguez D, Landick R.

Metab Eng. 2019 Mar;52:324-340. doi: 10.1016/j.ymben.2018.12.008. Epub 2018 Dec 27.

12.

acI Actinobacteria Assemble a Functional Actinorhodopsin with Natively Synthesized Retinal.

Dwulit-Smith JR, Hamilton JJ, Stevenson DM, He S, Oyserman BO, Moya-Flores F, Garcia SL, Amador-Noguez D, McMahon KD, Forest KT.

Appl Environ Microbiol. 2018 Nov 30;84(24). pii: e01678-18. doi: 10.1128/AEM.01678-18. Print 2018 Dec 15.

13.

Few Differences in Metabolic Network Use Found Between Salmonella enterica Colonization of Plants and Typhoidal Mice.

Kwan G, Plagenz B, Cowles K, Pisithkul T, Amador-Noguez D, Barak JD.

Front Microbiol. 2018 May 8;9:695. doi: 10.3389/fmicb.2018.00695. eCollection 2018.

14.

Fecal Aliquot Straw Technique (FAST) allows for easy and reproducible subsampling: assessing interpersonal variation in trimethylamine-N-oxide (TMAO) accumulation.

Romano KA, Dill-McFarland KA, Kasahara K, Kerby RL, Vivas EI, Amador-Noguez D, Herd P, Rey FE.

Microbiome. 2018 May 18;6(1):91. doi: 10.1186/s40168-018-0458-8.

15.

Cyclooxygenase-1 and -2 Play Contrasting Roles in Listeria-Stimulated Immunity.

Theisen E, McDougal CE, Nakanishi M, Stevenson DM, Amador-Noguez D, Rosenberg DW, Knoll LJ, Sauer JD.

J Immunol. 2018 Jun 1;200(11):3729-3738. doi: 10.4049/jimmunol.1700701. Epub 2018 Apr 20.

16.

Metabolome analysis reveals a role for glyceraldehyde 3-phosphate dehydrogenase in the inhibition of C. thermocellum by ethanol.

Tian L, Perot SJ, Stevenson D, Jacobson T, Lanahan AA, Amador-Noguez D, Olson DG, Lynd LR.

Biotechnol Biofuels. 2017 Nov 30;10:276. doi: 10.1186/s13068-017-0961-3. eCollection 2017.

17.

A metabolic pathway for catabolizing levulinic acid in bacteria.

Rand JM, Pisithkul T, Clark RL, Thiede JM, Mehrer CR, Agnew DE, Campbell CE, Markley AL, Price MN, Ray J, Wetmore KM, Suh Y, Arkin AP, Deutschbauer AM, Amador-Noguez D, Pfleger BF.

Nat Microbiol. 2017 Dec;2(12):1624-1634. doi: 10.1038/s41564-017-0028-z. Epub 2017 Sep 25.

18.

Metabolic, Epigenetic, and Transgenerational Effects of Gut Bacterial Choline Consumption.

Romano KA, Martinez-Del Campo A, Kasahara K, Chittim CL, Vivas EI, Amador-Noguez D, Balskus EP, Rey FE.

Cell Host Microbe. 2017 Sep 13;22(3):279-290.e7. doi: 10.1016/j.chom.2017.07.021. Epub 2017 Aug 24.

19.

Deletion of Type I glutamine synthetase deregulates nitrogen metabolism and increases ethanol production in Clostridium thermocellum.

Rydzak T, Garcia D, Stevenson DM, Sladek M, Klingeman DM, Holwerda EK, Amador-Noguez D, Brown SD, Guss AM.

Metab Eng. 2017 May;41:182-191. doi: 10.1016/j.ymben.2017.04.002. Epub 2017 Apr 8.

PMID:
28400329
20.

Glycolysis without pyruvate kinase in Clostridium thermocellum.

Olson DG, Hörl M, Fuhrer T, Cui J, Zhou J, Maloney MI, Amador-Noguez D, Tian L, Sauer U, Lynd LR.

Metab Eng. 2017 Jan;39:169-180. doi: 10.1016/j.ymben.2016.11.011. Epub 2016 Dec 1.

PMID:
27914869
21.

Recent applications of metabolomics to advance microbial biofuel production.

Martien JI, Amador-Noguez D.

Curr Opin Biotechnol. 2017 Feb;43:118-126. doi: 10.1016/j.copbio.2016.11.006. Epub 2016 Nov 22. Review.

PMID:
27883952
22.

Identification of Unanticipated and Novel N-Acyl L-Homoserine Lactones (AHLs) Using a Sensitive Non-Targeted LC-MS/MS Method.

Patel NM, Moore JD, Blackwell HE, Amador-Noguez D.

PLoS One. 2016 Oct 5;11(10):e0163469. doi: 10.1371/journal.pone.0163469. eCollection 2016.

23.

Metabolite concentrations, fluxes and free energies imply efficient enzyme usage.

Park JO, Rubin SA, Xu YF, Amador-Noguez D, Fan J, Shlomi T, Rabinowitz JD.

Nat Chem Biol. 2016 Jul;12(7):482-9. doi: 10.1038/nchembio.2077. Epub 2016 May 2.

24.

Different Functions of Phylogenetically Distinct Bacterial Complex I Isozymes.

Spero MA, Brickner JR, Mollet JT, Pisithkul T, Amador-Noguez D, Donohue TJ.

J Bacteriol. 2016 Mar 31;198(8):1268-80. doi: 10.1128/JB.01025-15. Print 2016 Apr.

25.

TrpE feedback mutants reveal roadblocks and conduits toward increasing secondary metabolism in Aspergillus fumigatus.

Wang PM, Choera T, Wiemann P, Pisithkul T, Amador-Noguez D, Keller NP.

Fungal Genet Biol. 2016 Apr;89:102-113. doi: 10.1016/j.fgb.2015.12.002. Epub 2015 Dec 14.

26.

Phenolic Amides Are Potent Inhibitors of De Novo Nucleotide Biosynthesis.

Pisithkul T, Jacobson TB, O'Brien TJ, Stevenson DM, Amador-Noguez D.

Appl Environ Microbiol. 2015 Sep 1;81(17):5761-72. doi: 10.1128/AEM.01324-15. Epub 2015 Jun 12.

27.
28.

Molecular mechanism and evolution of guanylate kinase regulation by (p)ppGpp.

Liu K, Myers AR, Pisithkul T, Claas KR, Satyshur KA, Amador-Noguez D, Keck JL, Wang JD.

Mol Cell. 2015 Feb 19;57(4):735-749. doi: 10.1016/j.molcel.2014.12.037. Epub 2015 Feb 5.

29.

Post-translational modifications as key regulators of bacterial metabolic fluxes.

Pisithkul T, Patel NM, Amador-Noguez D.

Curr Opin Microbiol. 2015 Apr;24:29-37. doi: 10.1016/j.mib.2014.12.006. Epub 2015 Jan 16. Review.

PMID:
25597444
30.

De novo amino acid biosynthesis contributes to salmonella enterica growth in Alfalfa seedling exudates.

Kwan G, Pisithkul T, Amador-Noguez D, Barak J.

Appl Environ Microbiol. 2015 Feb;81(3):861-73. doi: 10.1128/AEM.02985-14. Epub 2014 Nov 21.

31.

The exometabolome of Clostridium thermocellum reveals overflow metabolism at high cellulose loading.

Holwerda EK, Thorne PG, Olson DG, Amador-Noguez D, Engle NL, Tschaplinski TJ, van Dijken JP, Lynd LR.

Biotechnol Biofuels. 2014 Oct 21;7(1):155. doi: 10.1186/s13068-014-0155-1. eCollection 2014.

32.

Stoichiometry of site-specific lysine acetylation in an entire proteome.

Baeza J, Dowell JA, Smallegan MJ, Fan J, Amador-Noguez D, Khan Z, Denu JM.

J Biol Chem. 2014 Aug 1;289(31):21326-38. doi: 10.1074/jbc.M114.581843. Epub 2014 Jun 10.

33.

Steady-state metabolite concentrations reflect a balance between maximizing enzyme efficiency and minimizing total metabolite load.

Tepper N, Noor E, Amador-Noguez D, Haraldsdóttir HS, Milo R, Rabinowitz J, Liebermeister W, Shlomi T.

PLoS One. 2013 Sep 26;8(9):e75370. doi: 10.1371/journal.pone.0075370. eCollection 2013.

34.

Ultrasensitive regulation of anapleurosis via allosteric activation of PEP carboxylase.

Xu YF, Amador-Noguez D, Reaves ML, Feng XJ, Rabinowitz JD.

Nat Chem Biol. 2012 Apr 22;8(6):562-8. doi: 10.1038/nchembio.941.

35.

Metabolome remodeling during the acidogenic-solventogenic transition in Clostridium acetobutylicum.

Amador-Noguez D, Brasg IA, Feng XJ, Roquet N, Rabinowitz JD.

Appl Environ Microbiol. 2011 Nov;77(22):7984-97. doi: 10.1128/AEM.05374-11. Epub 2011 Sep 23.

36.

Evidence for an alternative glycolytic pathway in rapidly proliferating cells.

Vander Heiden MG, Locasale JW, Swanson KD, Sharfi H, Heffron GJ, Amador-Noguez D, Christofk HR, Wagner G, Rabinowitz JD, Asara JM, Cantley LC.

Science. 2010 Sep 17;329(5998):1492-9. doi: 10.1126/science.1188015.

37.

Systems-level metabolic flux profiling elucidates a complete, bifurcated tricarboxylic acid cycle in Clostridium acetobutylicum.

Amador-Noguez D, Feng XJ, Fan J, Roquet N, Rabitz H, Rabinowitz JD.

J Bacteriol. 2010 Sep;192(17):4452-61. doi: 10.1128/JB.00490-10. Epub 2010 Jul 9. Erratum in: J Bacteriol. 2011 Dec;193(23):6805.

38.

Metabolomic analysis via reversed-phase ion-pairing liquid chromatography coupled to a stand alone orbitrap mass spectrometer.

Lu W, Clasquin MF, Melamud E, Amador-Noguez D, Caudy AA, Rabinowitz JD.

Anal Chem. 2010 Apr 15;82(8):3212-21. doi: 10.1021/ac902837x.

39.

Cardiac function in young and old Little mice.

Reddy AK, Amador-Noguez D, Darlington GJ, Scholz BA, Michael LH, Hartley CJ, Entman ML, Taffet GE.

J Gerontol A Biol Sci Med Sci. 2007 Dec;62(12):1319-25.

40.

Alterations in xenobiotic metabolism in the long-lived Little mice.

Amador-Noguez D, Dean A, Huang W, Setchell K, Moore D, Darlington G.

Aging Cell. 2007 Aug;6(4):453-70. Epub 2007 May 23.

41.

Gender-specific alterations in gene expression and loss of liver sexual dimorphism in the long-lived Ames dwarf mice.

Amador-Noguez D, Zimmerman J, Venable S, Darlington G.

Biochem Biophys Res Commun. 2005 Jul 15;332(4):1086-100. Erratum in: Biochem Biophys Res Commun. 2005 Aug 26;334(2):733-5.

PMID:
15925325
42.

Gene expression profile of long-lived Ames dwarf mice and Little mice.

Amador-Noguez D, Yagi K, Venable S, Darlington G.

Aging Cell. 2004 Dec;3(6):423-41.

Supplemental Content

Loading ...
Support Center