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Genomic approaches to identify hybrids and estimate admixture times in European wildcat populations.

Mattucci F, Galaverni M, Lyons LA, Alves PC, Randi E, Velli E, Pagani L, Caniglia R.

Sci Rep. 2019 Aug 12;9(1):11612. doi: 10.1038/s41598-019-48002-w.


Gastrointestinal parasite infestation in the alpine mountain hare (Lepus timidus varronis): Are abiotic environmental factors such as elevation, temperature and precipitation affecting prevalence of parasite species?

Schai-Braun SC, Posautz A, Alves PC, Hackländer K.

Int J Parasitol Parasites Wildl. 2019 May 29;9:202-208. doi: 10.1016/j.ijppaw.2019.05.009. eCollection 2019 Aug.


The evolutionary history of the Cape hare (Lepus capensis sensu lato): insights for systematics and biogeography.

Lado S, Alves PC, Islam MZ, Brito JC, Melo-Ferreira J.

Heredity (Edinb). 2019 Nov;123(5):634-646. doi: 10.1038/s41437-019-0229-8. Epub 2019 May 9.


Quality of life and burnout among faculty members: How much does the field of knowledge matter?

Alves PC, Oliveira AF, Paro HBMDS.

PLoS One. 2019 Mar 22;14(3):e0214217. doi: 10.1371/journal.pone.0214217. eCollection 2019.


Have the cake and eat it: Optimizing nondestructive DNA metabarcoding of macroinvertebrate samples for freshwater biomonitoring.

Martins FMS, Galhardo M, Filipe AF, Teixeira A, Pinheiro P, Paupério J, Alves PC, Beja P.

Mol Ecol Resour. 2019 Jul;19(4):863-876. doi: 10.1111/1755-0998.13012. Epub 2019 Apr 29.


The anti-inflammatory activity of Anacardium occidentale L. increases the lifespan of diabetic mice with lethal sepsis.

Oliveira AS, Nascimento JR, Trovão LO, Alves PCS, Maciel MCG, Silva LDM, Marques AA, Santos APSA, Silva LA, Nascimento FRF, Guerra RNM.

J Ethnopharmacol. 2019 May 23;236:345-353. doi: 10.1016/j.jep.2019.03.014. Epub 2019 Mar 11. No abstract available.


A metaproteomics approach reveals changes in mandibular lymph node microbiota of wild boar naturally exposed to an increasing trend of Mycobacterium tuberculosis complex infection.

Queirós J, Villar M, Hernández-Jarguín A, López V, Fernández de Mera I, Vicente J, Alves PC, Gortazar C, Fuente J.

Tuberculosis (Edinb). 2019 Jan;114:103-112. doi: 10.1016/ Epub 2018 Dec 20.


Red deer in Iberia: Molecular ecological studies in a southern refugium and inferences on European postglacial colonization history.

Queirós J, Acevedo P, Santos JPV, Barasona J, Beltran-Beck B, González-Barrio D, Armenteros JA, Diez-Delgado I, Boadella M, Fernandéz de Mera I, Ruiz-Fons JF, Vicente J, de la Fuente J, Gortázar C, Searle JB, Alves PC.

PLoS One. 2019 Jan 8;14(1):e0210282. doi: 10.1371/journal.pone.0210282. eCollection 2019.


Females know better: Sex-biased habitat selection by the European wildcat.

Oliveira T, Urra F, López-Martín JM, Ballesteros-Duperón E, Barea-Azcón JM, Moléon M, Gil-Sánchez JM, Alves PC, Díaz-Ruíz F, Ferreras P, Monterroso P.

Ecol Evol. 2018 Aug 29;8(18):9464-9477. doi: 10.1002/ece3.4442. eCollection 2018 Sep.


Combining molecular and landscape tools for targeting evolutionary processes in reserve design: An approach for islands.

Vasconcelos R, Razgour O, Tarroso P, Fasola M, Carranza S, Alves PC.

PLoS One. 2018 Jul 24;13(7):e0200830. doi: 10.1371/journal.pone.0200830. eCollection 2018.


Integrative approaches to guide conservation decisions: Using genomics to define conservation units and functional corridors.

Barbosa S, Mestre F, White TA, Paupério J, Alves PC, Searle JB.

Mol Ecol. 2018 Sep;27(17):3452-3465. doi: 10.1111/mec.14806. Epub 2018 Aug 13.


Adaptive introgression underlies polymorphic seasonal camouflage in snowshoe hares.

Jones MR, Mills LS, Alves PC, Callahan CM, Alves JM, Lafferty DJR, Jiggins FM, Jensen JD, Melo-Ferreira J, Good JM.

Science. 2018 Jun 22;360(6395):1355-1358. doi: 10.1126/science.aar5273.


The Microtus voles: Resolving the phylogeny of one of the most speciose mammalian genera using genomics.

Barbosa S, Paupério J, Pavlova SV, Alves PC, Searle JB.

Mol Phylogenet Evol. 2018 Aug;125:85-92. doi: 10.1016/j.ympev.2018.03.017. Epub 2018 Mar 21.


Function and underlying mechanisms of seasonal colour moulting in mammals and birds: what keeps them changing in a warming world?

Zimova M, Hackländer K, Good JM, Melo-Ferreira J, Alves PC, Mills LS.

Biol Rev Camb Philos Soc. 2018 Aug;93(3):1478-1498. doi: 10.1111/brv.12405. Epub 2018 Mar 5. Review.


Winter color polymorphisms identify global hot spots for evolutionary rescue from climate change.

Mills LS, Bragina EV, Kumar AV, Zimova M, Lafferty DJR, Feltner J, Davis BM, Hackländer K, Alves PC, Good JM, Melo-Ferreira J, Dietz A, Abramov AV, Lopatina N, Fay K.

Science. 2018 Mar 2;359(6379):1033-1036. doi: 10.1126/science.aan8097. Epub 2018 Feb 15.


Insights into the evolution of the new variant rabbit haemorrhagic disease virus (GI.2) and the identification of novel recombinant strains.

Silvério D, Lopes AM, Melo-Ferreira J, Magalhães MJ, Monterroso P, Serronha A, Maio E, Alves PC, Esteves PJ, Abrantes J.

Transbound Emerg Dis. 2018 Aug;65(4):983-992. doi: 10.1111/tbed.12830. Epub 2018 Feb 11.


"The Death of Ivan Ilyich" and multiple dimensions of illness.

Alves PC.

Cien Saude Colet. 2018 Feb;23(2):381-388. doi: 10.1590/1413-81232018232.15162017. Portuguese, English.


Genome-wide associations identify novel candidate loci associated with genetic susceptibility to tuberculosis in wild boar.

Queirós J, Alves PC, Vicente J, Gortázar C, de la Fuente J.

Sci Rep. 2018 Jan 31;8(1):1980. doi: 10.1038/s41598-018-20158-x.


A genomic map of clinal variation across the European rabbit hybrid zone.

Rafati N, Blanco-Aguiar JA, Rubin CJ, Sayyab S, Sabatino SJ, Afonso S, Feng C, Alves PC, Villafuerte R, Ferrand N, Andersson L, Carneiro M.

Mol Ecol. 2018 Mar;27(6):1457-1478. doi: 10.1111/mec.14494. Epub 2018 Feb 11.


Mountain hare transcriptome and diagnostic markers as resources to monitor hybridization with European hares.

Marques JP, Ferreira MS, Farelo L, Callahan CM, Hackländer K, Jenny H, Montgomery WI, Reid N, Good JM, Alves PC, Melo-Ferreira J.

Sci Data. 2017 Dec 5;4:170178. doi: 10.1038/sdata.2017.178.


Epidemiology of RHDV2 (Lagovirus europaeus/GI.2) in free-living wild European rabbits in Portugal.

Rouco C, Abrantes J, Serronha A, Lopes AM, Maio E, Magalhães MJ, Blanco E, Bárcena J, Esteves PJ, Santos N, Alves PC, Monterroso P.

Transbound Emerg Dis. 2018 Apr;65(2):e373-e382. doi: 10.1111/tbed.12767. Epub 2017 Nov 17.


Characterization of old RHDV strains by complete genome sequencing identifies a novel genetic group.

Lopes AM, Silvério D, Magalhães MJ, Areal H, Alves PC, Esteves PJ, Abrantes J.

Sci Rep. 2017 Oct 19;7(1):13599. doi: 10.1038/s41598-017-13902-2.


Myiasis associated with an invasive ductal carcinoma of the left breast: case study.

Rodrigues FT, Klemig LR, Cardozo MRP, Alves PC, Aguiar VM, Lessa CS.

Rev Inst Med Trop Sao Paulo. 2017 Jun 1;59:e35. doi: 10.1590/S1678-9946201759035.


The transcriptional landscape of seasonal coat colour moult in the snowshoe hare.

Ferreira MS, Alves PC, Callahan CM, Marques JP, Mills LS, Good JM, Melo-Ferreira J.

Mol Ecol. 2017 Aug;26(16):4173-4185. doi: 10.1111/mec.14177. Epub 2017 Jun 7.


An update on the rabbit hemorrhagic disease virus (RHDV) strains circulating in Portugal in the 1990s: earliest detection of G3-G5 and G6.

Lopes AM, Magalhães MJ, Alves PC, Esteves PJ, Abrantes J.

Arch Virol. 2017 Jul;162(7):2061-2065. doi: 10.1007/s00705-017-3318-0. Epub 2017 Mar 15.


Range expansion underlies historical introgressive hybridization in the Iberian hare.

Marques JP, Farelo L, Vilela J, Vanderpool D, Alves PC, Good JM, Boursot P, Melo-Ferreira J.

Sci Rep. 2017 Jan 25;7:40788. doi: 10.1038/srep40788.


Coccidiosis in European rabbit (Oryctolagus cuniculus algirus) populations in the Iberian Peninsula.

Silva SM, Ferreira C, Paupério J, Silva RM, Alves PC, Lemos A.

Acta Parasitol. 2017 Mar 1;62(1):229. doi: 10.1515/ap-2017-0030. No abstract available.


Endemic species may have complex histories: within-refugium phylogeography of an endangered Iberian vole.

Barbosa S, Paupério J, Herman JS, Ferreira CM, Pita R, Vale-Gonçalves HM, Cabral JA, Garrido-García JA, Soriguer RC, Beja P, Mira A, Alves PC, Searle JB.

Mol Ecol. 2017 Feb;26(3):951-967. doi: 10.1111/mec.13994. Epub 2017 Jan 27.


Disease-mediated bottom-up regulation: An emergent virus affects a keystone prey, and alters the dynamics of trophic webs.

Monterroso P, Garrote G, Serronha A, Santos E, Delibes-Mateos M, Abrantes J, Perez de Ayala R, Silvestre F, Carvalho J, Vasco I, Lopes AM, Maio E, Magalhães MJ, Mills LS, Esteves PJ, Simón MÁ, Alves PC.

Sci Rep. 2016 Oct 31;6:36072. doi: 10.1038/srep36072.


Coccidiosis in European rabbit (Oryctolagus cuniculus algirus) populations in the Iberian Peninsula.

Silva SM, Ferreira C, Paupério J, Silva RM, Alves PC, Lemos A.

Acta Parasitol. 2016 Sep 1;61(3):655. doi: 10.1515/ap-2016-0090. No abstract available.


Platelet-rich plasma (PRP) and adipose-derived mesenchymal stem cells: stimulatory effects on proliferation and migration of fibroblasts and keratinocytes in vitro.

Stessuk T, Puzzi MB, Chaim EA, Alves PC, de Paula EV, Forte A, Izumizawa JM, Oliveira CC, Frei F, Ribeiro-Paes JT.

Arch Dermatol Res. 2016 Sep;308(7):511-20. doi: 10.1007/s00403-016-1676-1. Epub 2016 Jul 9.


Tuberculosis, genetic diversity and fitness in the red deer, Cervus elaphus.

Queirós J, Vicente J, Alves PC, de la Fuente J, Gortazar C.

Infect Genet Evol. 2016 Sep;43:203-12. doi: 10.1016/j.meegid.2016.05.031. Epub 2016 May 28.


Transcriptomic and metabolomic profiling of ionic liquid stimuli unveils enhanced secondary metabolism in Aspergillus nidulans.

Alves PC, Hartmann DO, Núñez O, Martins I, Gomes TL, Garcia H, Galceran MT, Hampson R, Becker JD, Silva Pereira C.

BMC Genomics. 2016 Apr 12;17:284. doi: 10.1186/s12864-016-2577-6.


Comparative Proteomics Identifies Host Immune System Proteins Affected by Infection with Mycobacterium bovis.

López V, Villar M, Queirós J, Vicente J, Mateos-Hernández L, Díez-Delgado I, Contreras M, Alves PC, Alberdi P, Gortázar C, de la Fuente J.

PLoS Negl Trop Dis. 2016 Mar 30;10(3):e0004541. doi: 10.1371/journal.pntd.0004541. eCollection 2016 Mar.


Turnabout Is Fair Play: Herbivory-Induced Plant Chitinases Excreted in Fall Armyworm Frass Suppress Herbivore Defenses in Maize.

Ray S, Alves PC, Ahmad I, Gaffoor I, Acevedo FE, Peiffer M, Jin S, Han Y, Shakeel S, Felton GW, Luthe DS.

Plant Physiol. 2016 May;171(1):694-706. doi: 10.1104/pp.15.01854. Epub 2016 Mar 15.


LaGomiCs-Lagomorph Genomics Consortium: An International Collaborative Effort for Sequencing the Genomes of an Entire Mammalian Order.

Fontanesi L, Di Palma F, Flicek P, Smith AT, Thulin CG, Alves PC; Lagomorph Genomics Consortium.

J Hered. 2016 Jul;107(4):295-308. doi: 10.1093/jhered/esw010. Epub 2016 Feb 26. Review.


European wildcat populations are subdivided into five main biogeographic groups: consequences of Pleistocene climate changes or recent anthropogenic fragmentation?

Mattucci F, Oliveira R, Lyons LA, Alves PC, Randi E.

Ecol Evol. 2015 Dec 7;6(1):3-22. doi: 10.1002/ece3.1815. eCollection 2016 Jan.


Reply to Garner et al.

Shafer ABA, Wolf JBW, Alves PC, Bergström L, Colling G, Dalén L, De Meester L, Ekblom R, Fior S, Hajibabaei M, Hoezel AR, Hoglund J, Jensen EL, Krützen M, Norman AJ, Österling EM, Ouborg NJ, Piccolo J, Primmer CR, Reed FA, Roumet M, Salmona J, Schwartz MK, Segelbacher G, Thaulow J, Valtonen M, Vergeer P, Weissensteiner M, Wheat CW, Vilà C, Zieliński P.

Trends Ecol Evol. 2016 Feb;31(2):83-84. doi: 10.1016/j.tree.2015.11.010. Epub 2015 Dec 17. No abstract available.


Coccidiosis in European rabbit (Oryctolagus cuniculus algirus) populations in the Iberian Peninsula.

Silva SM, Ferreira C, Paupério J, Silva RM, Alves PC, Lemos A.

Acta Parasitol. 2015 Jun;60(2):350-5. doi: 10.1515/ap-2015-0049.


Toward a genome-wide approach for detecting hybrids: informative SNPs to detect introgression between domestic cats and European wildcats (Felis silvestris).

Oliveira R, Randi E, Mattucci F, Kurushima JD, Lyons LA, Alves PC.

Heredity (Edinb). 2015 Sep;115(3):195-205. doi: 10.1038/hdy.2015.25. Epub 2015 Jun 24.


Candidate genes underlying heritable differences in reproductive seasonality between wild and domestic rabbits.

Carneiro M, Piorno V, Rubin CJ, Alves JM, Ferrand N, Alves PC, Andersson L.

Anim Genet. 2015 Aug;46(4):418-25. doi: 10.1111/age.12299. Epub 2015 May 22.


Is the new variant RHDV replacing genogroup 1 in Portuguese wild rabbit populations?

Lopes AM, Correia J, Abrantes J, Melo P, Ramada M, Magalhães MJ, Alves PC, Esteves PJ.

Viruses. 2014 Dec 30;7(1):27-36. doi: 10.3390/v7010027.


Personalising the evaluation of substance misuse treatment: a new approach to outcome measurement.

Alves PC, Sales CM, Ashworth M.

Int J Drug Policy. 2015 Apr;26(4):333-5. doi: 10.1016/j.drugpo.2014.11.014. Epub 2014 Dec 3. No abstract available.


Genomics and the challenging translation into conservation practice.

Shafer AB, Wolf JB, Alves PC, Bergström L, Bruford MW, Brännström I, Colling G, Dalén L, De Meester L, Ekblom R, Fawcett KD, Fior S, Hajibabaei M, Hill JA, Hoezel AR, Höglund J, Jensen EL, Krause J, Kristensen TN, Krützen M, McKay JK, Norman AJ, Ogden R, Österling EM, Ouborg NJ, Piccolo J, Popović D, Primmer CR, Reed FA, Roumet M, Salmona J, Schenekar T, Schwartz MK, Segelbacher G, Senn H, Thaulow J, Valtonen M, Veale A, Vergeer P, Vijay N, Vilà C, Weissensteiner M, Wennerström L, Wheat CW, Zieliński P.

Trends Ecol Evol. 2015 Feb;30(2):78-87. doi: 10.1016/j.tree.2014.11.009. Epub 2014 Dec 17.


Feline mitochondrial DNA sampling for forensic analysis: when enough is enough!

Grahn RA, Alhaddad H, Alves PC, Randi E, Waly NE, Lyons LA.

Forensic Sci Int Genet. 2015 May;16:52-57. doi: 10.1016/j.fsigen.2014.11.017. Epub 2014 Nov 29.


Effect of microsatellite selection on individual and population genetic inferences: an empirical study using cross-specific and species-specific amplifications.

Queirós J, Godinho R, Lopes S, Gortazar C, de la Fuente J, Alves PC.

Mol Ecol Resour. 2015 Jul;15(4):747-60. doi: 10.1111/1755-0998.12349. Epub 2014 Dec 6.


A Critically Endangered new dragonfly species from Morocco: Onychogomphus boudoti sp. nov. (Odonata: Gomphidae).

Ferreira S, Velo-Antón G, Brochard C, Vieira C, Alves PC, Thompson DJ, Watts PC, Brito JC.

Zootaxa. 2014 Aug 25;3856(3):349-65. doi: 10.11646/zootaxa.3856.3.3.


Sequencing of Sylvilagus VDJ genes reveals a new VHa allelic lineage and shows that ancient VH lineages were retained differently in leporids.

Pinheiro A, Melo-Ferreira J, Abrantes J, Martinelli N, Lavazza A, Alves PC, Gortázar C, Esteves PJ.

Immunogenetics. 2014 Dec;66(12):719-26. doi: 10.1007/s00251-014-0807-0. Epub 2014 Sep 30.


Genetic identification of endangered North African ungulates using noninvasive sampling.

Silva TL, Godinho R, Castro D, Abáigar T, Brito JC, Alves PC.

Mol Ecol Resour. 2015 May;15(3):652-61. doi: 10.1111/1755-0998.12335. Epub 2014 Oct 24.


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