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Items: 22

1.

Generation and comparative genomics of synthetic dengue viruses.

Goz E, Tsalenchuck Y, Benaroya RO, Zafrir Z, Atar S, Altman T, Julander J, Tuller T.

BMC Bioinformatics. 2018 May 8;19(Suppl 6):140. doi: 10.1186/s12859-018-2132-3.

2.

The receptor tyrosine kinase TrkB signals without dimerization at the plasma membrane.

Zahavi EE, Steinberg N, Altman T, Chein M, Joshi Y, Gradus-Pery T, Perlson E.

Sci Signal. 2018 May 8;11(529). pii: eaao4006. doi: 10.1126/scisignal.aao4006.

PMID:
29739881
3.

A geographically-diverse collection of 418 human gut microbiome pathway genome databases.

Hahn AS, Altman T, Konwar KM, Hanson NW, Kim D, Relman DA, Dill DL, Hallam SJ.

Sci Data. 2017 Apr 11;4:170035. doi: 10.1038/sdata.2017.35.

4.

ALS Along the Axons - Expression of Coding and Noncoding RNA Differs in Axons of ALS models.

Rotem N, Magen I, Ionescu A, Gershoni-Emek N, Altman T, Costa CJ, Gradus T, Pasmanik-Chor M, Willis DE, Ben-Dov IZ, Hornstein E, Perlson E.

Sci Rep. 2017 Mar 16;7:44500. doi: 10.1038/srep44500.

5.

Metabolic pathways for the whole community.

Hanson NW, Konwar KM, Hawley AK, Altman T, Karp PD, Hallam SJ.

BMC Genomics. 2014 Jul 22;15:619. doi: 10.1186/1471-2164-15-619.

6.

Finding sequences for over 270 orphan enzymes.

Shearer AG, Altman T, Rhee CD.

PLoS One. 2014 May 14;9(5):e97250. doi: 10.1371/journal.pone.0097250. eCollection 2014.

7.

PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools.

Hu JC, Sherlock G, Siegele DA, Aleksander SA, Ball CA, Demeter J, Gouni S, Holland TA, Karp PD, Lewis JE, Liles NM, McIntosh BK, Mi H, Muruganujan A, Wymore F, Thomas PD, Altman T.

Nucleic Acids Res. 2014 Jan;42(Database issue):D677-84. doi: 10.1093/nar/gkt1203. Epub 2013 Nov 26. Erratum in: Nucleic Acids Res. 2014 Oct 29;42(19):12330.

8.

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.

Caspi R, Altman T, Billington R, Dreher K, Foerster H, Fulcher CA, Holland TA, Keseler IM, Kothari A, Kubo A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Subhraveti P, Weaver DS, Weerasinghe D, Zhang P, Karp PD.

Nucleic Acids Res. 2014 Jan;42(Database issue):D459-71. doi: 10.1093/nar/gkt1103. Epub 2013 Nov 12.

9.

Use of electronic cigarettes among state tobacco cessation quitline callers.

Vickerman KA, Carpenter KM, Altman T, Nash CM, Zbikowski SM.

Nicotine Tob Res. 2013 Oct;15(10):1787-91. doi: 10.1093/ntr/ntt061. Epub 2013 May 8.

PMID:
23658395
10.

A systematic comparison of the MetaCyc and KEGG pathway databases.

Altman T, Travers M, Kothari A, Caspi R, Karp PD.

BMC Bioinformatics. 2013 Mar 27;14:112. doi: 10.1186/1471-2105-14-112.

11.

Data mining in the MetaCyc family of pathway databases.

Karp PD, Paley S, Altman T.

Methods Mol Biol. 2013;939:183-200. doi: 10.1007/978-1-62703-107-3_12.

12.

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.

Caspi R, Altman T, Dreher K, Fulcher CA, Subhraveti P, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Pujar A, Shearer AG, Travers M, Weerasinghe D, Zhang P, Karp PD.

Nucleic Acids Res. 2012 Jan;40(Database issue):D742-53. doi: 10.1093/nar/gkr1014. Epub 2011 Nov 18.

13.

Outreach impact study: the case of the Greater Midwest Region.

Huber JT, Kean EB, Fitzgerald PD, Altman TA, Young ZG, Dupin KM, Leskovec J, Holst R.

J Med Libr Assoc. 2011 Oct;99(4):297-303. doi: 10.3163/1536-5050.99.4.007.

14.

EcoCyc: a comprehensive database of Escherichia coli biology.

Keseler IM, Collado-Vides J, Santos-Zavaleta A, Peralta-Gil M, Gama-Castro S, Muñiz-Rascado L, Bonavides-Martinez C, Paley S, Krummenacker M, Altman T, Kaipa P, Spaulding A, Pacheco J, Latendresse M, Fulcher C, Sarker M, Shearer AG, Mackie A, Paulsen I, Gunsalus RP, Karp PD.

Nucleic Acids Res. 2011 Jan;39(Database issue):D583-90. doi: 10.1093/nar/gkq1143. Epub 2010 Nov 21.

15.

HIGEDA: a hierarchical gene-set genetics based algorithm for finding subtle motifs in biological sequences.

Le T, Altman T, Gardiner K.

Bioinformatics. 2010 Feb 1;26(3):302-9. doi: 10.1093/bioinformatics/btp676. Epub 2009 Dec 8.

PMID:
19996163
16.

Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology.

Karp PD, Paley SM, Krummenacker M, Latendresse M, Dale JM, Lee TJ, Kaipa P, Gilham F, Spaulding A, Popescu L, Altman T, Paulsen I, Keseler IM, Caspi R.

Brief Bioinform. 2010 Jan;11(1):40-79. doi: 10.1093/bib/bbp043. Epub 2009 Dec 2.

17.

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.

Caspi R, Altman T, Dale JM, Dreher K, Fulcher CA, Gilham F, Kaipa P, Karthikeyan AS, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Paley S, Popescu L, Pujar A, Shearer AG, Zhang P, Karp PD.

Nucleic Acids Res. 2010 Jan;38(Database issue):D473-9. doi: 10.1093/nar/gkp875. Epub 2009 Oct 22.

18.

A Review of CAM for Procedural Pain in Infancy: Part I. Sucrose and Non-nutritive Sucking.

Tsao JC, Evans S, Meldrum M, Altman T, Zeltzer LK.

Evid Based Complement Alternat Med. 2008 Dec;5(4):371-81. doi: 10.1093/ecam/nem084. Epub 2007 Nov 6.

19.

A Review of CAM for Procedural Pain in Infancy: Part II. Other Interventions.

Tsao JC, Evans S, Meldrum M, Altman T, Zeltzer LK.

Evid Based Complement Alternat Med. 2008 Dec;5(4):399-407. doi: 10.1093/ecam/nem089. Epub 2007 Oct 25.

20.

Interpersonal impairment and the prediction of depressive symptoms in adolescent children of depressed and nondepressed mothers.

Hammen C, Shih J, Altman T, Brennan PA.

J Am Acad Child Adolesc Psychiatry. 2003 May;42(5):571-7.

PMID:
12707561
21.

Managing cancer side effects to improve quality of life: a cancer psychoeducation program.

Golant M, Altman T, Martin C.

Cancer Nurs. 2003 Feb;26(1):37-44; quiz 45-6.

PMID:
12556711
22.

Priorities in prevention research for eating disorders.

Taylor CB, Altman T.

Psychopharmacol Bull. 1997;33(3):413-7. Review.

PMID:
9550886

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