Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 32

1.

Thermodynamic model of gene regulation for the Or59b olfactory receptor in Drosophila.

González A, Jafari S, Zenere A, Alenius M, Altafini C.

PLoS Comput Biol. 2019 Jan 17;15(1):e1006709. doi: 10.1371/journal.pcbi.1006709. eCollection 2019 Jan.

2.

Minimum energy control for complex networks.

Lindmark G, Altafini C.

Sci Rep. 2018 Feb 16;8(1):3188. doi: 10.1038/s41598-018-21398-7.

3.

Qualitative and quantitative responses to press perturbations in ecological networks.

Giordano G, Altafini C.

Sci Rep. 2017 Sep 12;7(1):11378. doi: 10.1038/s41598-017-11221-0.

4.

Controllability of complex networks with unilateral inputs.

Lindmark G, Altafini C.

Sci Rep. 2017 May 12;7(1):1824. doi: 10.1038/s41598-017-01846-6.

5.

The Geometric Phase of Stock Trading.

Altafini C.

PLoS One. 2016 Aug 24;11(8):e0161538. doi: 10.1371/journal.pone.0161538. eCollection 2016.

6.

Drug combinatorics and side effect estimation on the signed human drug-target network.

Torres NB, Altafini C.

BMC Syst Biol. 2016 Aug 15;10(1):74. doi: 10.1186/s12918-016-0326-8.

7.

Metabolic Adaptation Processes That Converge to Optimal Biomass Flux Distributions.

Altafini C, Facchetti G.

PLoS Comput Biol. 2015 Sep 4;11(9):e1004434. doi: 10.1371/journal.pcbi.1004434. eCollection 2015 Sep.

8.

The phototransduction machinery in the rod outer segment has a strong efficacy gradient.

Mazzolini M, Facchetti G, Andolfi L, Proietti Zaccaria R, Tuccio S, Treu J, Altafini C, Di Fabrizio EM, Lazzarino M, Rapp G, Torre V.

Proc Natl Acad Sci U S A. 2015 May 19;112(20):E2715-24. doi: 10.1073/pnas.1423162112. Epub 2015 May 4.

9.

Partial inhibition and bilevel optimization in flux balance analysis.

Facchetti G, Altafini C.

BMC Bioinformatics. 2013 Nov 29;14:344. doi: 10.1186/1471-2105-14-344.

10.

Early phase of plasticity-related gene regulation and SRF dependent transcription in the hippocampus.

Iacono G, Altafini C, Torre V.

PLoS One. 2013 Jul 23;8(7):e68078. doi: 10.1371/journal.pone.0068078. Print 2013.

11.

A rate-distortion theory for gene regulatory networks and its application to logic gate consistency.

Facchetti G, Iacono G, De Palo G, Altafini C.

Bioinformatics. 2013 May 1;29(9):1166-73. doi: 10.1093/bioinformatics/btt116. Epub 2013 Mar 6.

PMID:
23471299
12.

Common dynamical features of sensory adaptation in photoreceptors and olfactory sensory neurons.

De Palo G, Facchetti G, Mazzolini M, Menini A, Torre V, Altafini C.

Sci Rep. 2013;3:1251. doi: 10.1038/srep01251. Epub 2013 Feb 13.

13.

Exploring the low-energy landscape of large-scale signed social networks.

Facchetti G, Iacono G, Altafini C.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Sep;86(3 Pt 2):036116. Epub 2012 Sep 26.

PMID:
23030989
14.

Predicting and characterizing selective multiple drug treatments for metabolic diseases and cancer.

Facchetti G, Zampieri M, Altafini C.

BMC Syst Biol. 2012 Aug 29;6:115. doi: 10.1186/1752-0509-6-115.

15.

Dynamics of opinion forming in structurally balanced social networks.

Altafini C.

PLoS One. 2012;7(6):e38135. doi: 10.1371/journal.pone.0038135. Epub 2012 Jun 19.

16.

A dynamical feedback model for adaptation in the olfactory transduction pathway.

De Palo G, Boccaccio A, Miri A, Menini A, Altafini C.

Biophys J. 2012 Jun 20;102(12):2677-86. doi: 10.1016/j.bpj.2012.04.040. Epub 2012 Jun 19.

17.

Detection of transcriptional triggers in the dynamics of microbial growth: application to the respiratorily versatile bacterium Shewanella oneidensis.

Beg QK, Zampieri M, Klitgord N, Collins SB, Altafini C, Serres MH, Segrè D.

Nucleic Acids Res. 2012 Aug;40(15):7132-49. doi: 10.1093/nar/gks467. Epub 2012 May 25.

18.

Computing global structural balance in large-scale signed social networks.

Facchetti G, Iacono G, Altafini C.

Proc Natl Acad Sci U S A. 2011 Dec 27;108(52):20953-8. doi: 10.1073/pnas.1109521108. Epub 2011 Dec 13.

19.

Decompositions of large-scale biological systems based on dynamical properties.

Soranzo N, Ramezani F, Iacono G, Altafini C.

Bioinformatics. 2012 Jan 1;28(1):76-83. doi: 10.1093/bioinformatics/btr620. Epub 2011 Nov 9.

PMID:
22072388
20.

A system-level approach for deciphering the transcriptional response to prion infection.

Zampieri M, Legname G, Segrè D, Altafini C.

Bioinformatics. 2011 Dec 15;27(24):3407-14. doi: 10.1093/bioinformatics/btr580. Epub 2011 Oct 20.

PMID:
22016408
21.

Adaptation as a genome-wide autoregulatory principle in the stress response of yeast.

De Palo G, Eduati F, Zampieri M, Di Camillo B, Toffolo G, Altafini C.

IET Syst Biol. 2011 Jul;5(4):269-79. doi: 10.1049/iet-syb.2009.0050.

PMID:
21823758
22.
23.

Determining the distance to monotonicity of a biological network: a graph-theoretical approach.

Iacono G, Ramezani F, Soranzo N, Altafini C.

IET Syst Biol. 2010 May;4(3):223-35. doi: 10.1049/iet-syb.2009.0040.

PMID:
20500002
24.

A kinetic mechanism inducing oscillations in simple chemical reactions networks.

Coatleven J, Altafini C.

Math Biosci Eng. 2010 Apr;7(2):301-12. doi: 10.3934/mbe.2010.7.301.

25.

Sequential steps underlying neuronal plasticity induced by a transient exposure to gabazine.

Pegoraro S, Broccard FD, Ruaro ME, Bianchini D, Avossa D, Pastore G, Bisson G, Altafini C, Torre V.

J Cell Physiol. 2010 Mar;222(3):713-28. doi: 10.1002/jcp.21998.

PMID:
20027606
26.

ERNEST: a toolbox for chemical reaction network theory.

Soranzo N, Altafini C.

Bioinformatics. 2009 Nov 1;25(21):2853-4. doi: 10.1093/bioinformatics/btp513. Epub 2009 Aug 27.

PMID:
19713415
27.

Investigating the conformational stability of prion strains through a kinetic replication model.

Zampieri M, Legname G, Altafini C.

PLoS Comput Biol. 2009 Jul;5(7):e1000420. doi: 10.1371/journal.pcbi.1000420. Epub 2009 Jul 3.

28.

mRNA stability and the unfolding of gene expression in the long-period yeast metabolic cycle.

Soranzo N, Zampieri M, Farina L, Altafini C.

BMC Syst Biol. 2009 Feb 6;3:18. doi: 10.1186/1752-0509-3-18.

29.

Characterization of the time course of changes of the evoked electrical activity in a model of a chemically-induced neuronal plasticity.

Broccard FD, Pegoraro S, Ruaro ME, Altafini C, Torre V.

BMC Res Notes. 2009 Jan 27;2:13. doi: 10.1186/1756-0500-2-13.

30.

Origin of co-expression patterns in E. coli and S. cerevisiae emerging from reverse engineering algorithms.

Zampieri M, Soranzo N, Bianchini D, Altafini C.

PLoS One. 2008 Aug 20;3(8):e2981. doi: 10.1371/journal.pone.0002981.

31.

Discerning static and causal interactions in genome-wide reverse engineering problems.

Zampieri M, Soranzo N, Altafini C.

Bioinformatics. 2008 Jul 1;24(13):1510-5. doi: 10.1093/bioinformatics/btn220. Epub 2008 May 8.

PMID:
18467346
32.

Comparing association network algorithms for reverse engineering of large-scale gene regulatory networks: synthetic versus real data.

Soranzo N, Bianconi G, Altafini C.

Bioinformatics. 2007 Jul 1;23(13):1640-7. Epub 2007 May 7.

PMID:
17485431

Supplemental Content

Loading ...
Support Center