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Items: 1 to 50 of 95

1.

Comparative genomic and methylome analysis of non-virulent D74 and virulent Nagasaki Haemophilus parasuis isolates.

Nicholson TL, Brunelle BW, Bayles DO, Alt DP, Shore SM.

PLoS One. 2018 Nov 1;13(11):e0205700. doi: 10.1371/journal.pone.0205700. eCollection 2018.

2.

Treponeme-Associated Hoof Disease of Free-Ranging Elk ( Cervus elaphus) in Southwestern Washington State, USA.

Han S, Mansfield KG, Bradway DS, Besser TE, Read DH, Haldorson GJ, Alt DP, Wilson-Welder JH.

Vet Pathol. 2019 Jan;56(1):118-132. doi: 10.1177/0300985818798108. Epub 2018 Sep 24.

PMID:
30244661
3.

Links between Adolescents' Deep and Surface Learning Approaches, Problematic Internet Use, and Fear of Missing Out (FoMO).

Alt D, Boniel-Nissim M.

Internet Interv. 2018 Jun 1;13:30-39. doi: 10.1016/j.invent.2018.05.002. eCollection 2018 Sep.

4.

Coincidence cloning recovery of Brucella melitensis RNA from goat tissues: advancing the in vivo analysis of pathogen gene expression in brucellosis.

Boggiatto PM, Fitzsimmons D, Bayles DO, Alt D, Vrentas CE, Olsen SC.

BMC Mol Biol. 2018 Aug 1;19(1):10. doi: 10.1186/s12867-018-0111-x.

5.

Bulk soil bacterial community structure and function respond to long-term organic and conventional agricultural management.

Bakker MG, Looft T, Alt DP, Delate K, Cambardella CA.

Can J Microbiol. 2018 Dec;64(12):901-914. doi: 10.1139/cjm-2018-0134. Epub 2018 Jul 30.

PMID:
30058369
6.

Short communication: Lymphocyte proliferative responses in cattle naturally infected with digital dermatitis consist of CD8+ and γδ-T cells but lack CD4+ T cells.

Wilson-Welder JH, Nally JE, Alt DP, Humphrey SB, Olsen SC.

J Dairy Sci. 2018 Sep;101(9):8301-8307. doi: 10.3168/jds.2017-13913. Epub 2018 Jun 13.

PMID:
29908808
7.

A Modular Strategy to Engineer Complex Tissues and Organs.

Dikina AD, Alt DS, Herberg S, McMillan A, Strobel HA, Zheng Z, Cao M, Lai BP, Jeon O, Petsinger VI, Cotton CU, Rolle MW, Alsberg E.

Adv Sci (Weinh). 2018 Feb 14;5(5):1700402. doi: 10.1002/advs.201700402. eCollection 2018 May.

8.

Isolation and characterization of pathogenic leptospires associated with cattle.

Nally JE, Hornsby RL, Alt DP, Bayles D, Wilson-Welder JH, Palmquist DE, Bauer NE.

Vet Microbiol. 2018 May;218:25-30. doi: 10.1016/j.vetmic.2018.03.023. Epub 2018 Mar 19.

PMID:
29685217
9.

Inbred Rats as a Model to Study Persistent Renal Leptospirosis and Associated Cellular Immune Responsiveness.

Nally JE, Wilson-Welder JH, Hornsby RL, Palmer MV, Alt DP.

Front Cell Infect Microbiol. 2018 Mar 14;8:66. doi: 10.3389/fcimb.2018.00066. eCollection 2018.

10.

Experimental Transmission of Bovine Digital Dermatitis to Sheep: Development of an Infection Model.

Wilson-Welder JH, Nally JE, Alt DP, Palmer MV, Coatney J, Plummer P.

Vet Pathol. 2018 Mar;55(2):245-257. doi: 10.1177/0300985817736572. Epub 2017 Nov 16.

PMID:
29145798
11.

Draft Genome Sequences of 50 Methicillin-Resistant Staphylococcus aureus Sequence Type 5 Isolates Obtained from a U.S. Hospital.

Hau SJ, Bayles DO, Alt DP, Nicholson TL.

Genome Announc. 2017 Nov 2;5(44). pii: e01083-17. doi: 10.1128/genomeA.01083-17.

12.

Draft Genome Sequences of 14 Livestock-Associated Methicillin-Resistant Staphylococcus aureus Sequence Type 398 Isolates from Swine Farms in the United States.

Hau SJ, Bayles DO, Alt DP, Frana TS, Nicholson TL.

Genome Announc. 2017 Nov 2;5(44). pii: e01082-17. doi: 10.1128/genomeA.01082-17.

13.

Draft Genome Sequences of 63 Swine-Associated Methicillin-Resistant Staphylococcus aureus Sequence Type 5 Isolates from the United States.

Hau SJ, Bayles DO, Alt DP, Frana TS, Nicholson TL.

Genome Announc. 2017 Nov 2;5(44). pii: e01081-17. doi: 10.1128/genomeA.01081-17.

14.

Draft Genome Sequences of One Methicillin-Sensitive and Seven Methicillin-Resistant Staphylococcus aureus Sequence Type 5 Isolates Obtained in California.

Hau SJ, Bayles DO, Alt DP, Nicholson TL.

Genome Announc. 2017 Oct 19;5(42). pii: e01084-17. doi: 10.1128/genomeA.01084-17.

15.

Draft Genome Sequences of Nine Livestock-Associated Methicillin-Resistant Staphylococcus aureus Sequence Type 5 Isolates Obtained from Humans after Short-Term Swine Contact.

Hau SJ, Bayles DO, Alt DP, Frana TS, Nicholson TL.

Genome Announc. 2017 Oct 12;5(41). pii: e01080-17. doi: 10.1128/genomeA.01080-17.

16.

Draft Genome Sequences of Nine Livestock-Associated Methicillin-Resistant Staphylococcus aureus Sequence Type 5 Isolates from Humans with Long-Term Swine Contact.

Hau SJ, Bayles DO, Alt DP, Davies PR, Haan JS, Nicholson TL.

Genome Announc. 2017 Oct 12;5(41). pii: e01079-17. doi: 10.1128/genomeA.01079-17.

17.

Complete Genome Sequence of a Livestock-Associated Methicillin-Resistant Staphylococcus aureus Sequence Type 5 Isolate from the United States.

Hau SJ, Bayles DO, Alt DP, Frana TS, Nicholson TL.

Genome Announc. 2017 Aug 10;5(32). pii: e00791-17. doi: 10.1128/genomeA.00791-17.

18.

Complete Genome Sequence of Livestock-Associated Methicillin-Resistant Staphylococcus aureus Sequence Type 398 Isolated from Swine in the United States.

Hau SJ, Bayles DO, Alt DP, Frana TS, Nicholson TL.

Genome Announc. 2017 Aug 10;5(32). pii: e00790-17. doi: 10.1128/genomeA.00790-17.

19.

Nitrogen-source preference in blueberry (Vaccinium sp.): Enhanced shoot nitrogen assimilation in response to direct supply of nitrate.

Alt DS, Doyle JW, Malladi A.

J Plant Physiol. 2017 Sep;216:79-87. doi: 10.1016/j.jplph.2017.05.014. Epub 2017 May 23.

PMID:
28578080
20.

Training: Lure young surgeons on to research tracks.

Alt DS.

Nature. 2017 May 31;546(7656):33. doi: 10.1038/546033c. No abstract available.

PMID:
28569820
21.

Complete Genome Sequences of Two Staphylococcus aureus Sequence Type 5 Isolates from California, USA.

Hau SJ, Bayles DO, Alt DP, Nicholson TL.

Genome Announc. 2017 Mar 30;5(13). pii: e00099-17. doi: 10.1128/genomeA.00099-17.

22.

Draft Genome Sequences of 14 Staphylococcus aureus Sequence Type 5 Isolates from California, USA.

Hau SJ, Bayles DO, Alt DP, Nicholson TL.

Genome Announc. 2017 Mar 30;5(13). pii: e00098-17. doi: 10.1128/genomeA.00098-17.

23.
24.

Complete Genome Sequences of Curli-Negative and Curli-Positive Isolates of Foodborne Escherichia coli O157:H7 Strain 86-24.

Sharma VK, Bayles DO, Alt DP, Looft T.

Genome Announc. 2016 Dec 15;4(6). pii: e01323-16. doi: 10.1128/genomeA.01323-16.

25.

Interaction of Bovine Peripheral Blood Polymorphonuclear Cells and Leptospira Species; Innate Responses in the Natural Bovine Reservoir Host.

Wilson-Welder JH, Frank AT, Hornsby RL, Olsen SC, Alt DP.

Front Microbiol. 2016 Jul 19;7:1110. doi: 10.3389/fmicb.2016.01110. eCollection 2016.

26.

Pipeline for amplifying and analyzing amplicons of the V1-V3 region of the 16S rRNA gene.

Allen HK, Bayles DO, Looft T, Trachsel J, Bass BE, Alt DP, Bearson SM, Nicholson T, Casey TA.

BMC Res Notes. 2016 Aug 2;9:380. doi: 10.1186/s13104-016-2172-6.

27.

Digital Dermatitis in Cattle: Current Bacterial and Immunological Findings.

Wilson-Welder JH, Alt DP, Nally JE.

Animals (Basel). 2015 Nov 11;5(4):1114-35. doi: 10.3390/ani5040400. Review.

28.

Draft Genome Sequences of Nine Streptococcus suis Strains Isolated in the United States.

Hau SJ, Bayles DO, Alt DP, Brockmeier SL, Frana TS, Nicholson TL.

Genome Announc. 2015 Nov 5;3(6). pii: e01301-15. doi: 10.1128/genomeA.01301-15.

29.

Complete Genome Sequence of Coriobacteriaceae Strain 68-1-3, a Novel Mucus-Degrading Isolate from the Swine Intestinal Tract.

Looft T, Bayles DO, Alt DP, Stanton TB.

Genome Announc. 2015 Oct 8;3(5). pii: e01143-15. doi: 10.1128/genomeA.01143-15.

30.

Complete Genome Sequence of Leptospira interrogans Serovar Bratislava, Strain PigK151.

Alt DP, Wilson-Welder JH, Bayles DO, Cameron C, Adler B, Bulach DM, Seemann T, Lehane MJ, Haines LR, Darby AC, Hall N, Radford AD, Zuerner RL.

Genome Announc. 2015 Jun 25;3(3). pii: e00678-15. doi: 10.1128/genomeA.00678-15.

31.

The etiology of digital dermatitis in ruminants: recent perspectives.

Wilson-Welder JH, Alt DP, Nally JE.

Vet Med (Auckl). 2015 May 4;6:155-164. doi: 10.2147/VMRR.S62072. eCollection 2015. Review.

32.

Antibiotic Efficacy in Eliminating Leptospiruria in California Sea Lions (Zalophus californianus) Stranding with Leptospirosis.

Prager KC, Alt DP, Buhnerkempe MG, Greig DJ, Galloway RL, Wu Q, Gulland FMD, Lloyd-Smith JO.

Aquat Mamm. 2015;14(2):203-212. doi: 10.1578/AM.41.2.2015.203. Epub 2015 May 26.

33.

Identification of several clades of novel single-stranded circular DNA viruses with conserved stem-loop structures in pig feces.

Cheung AK, Ng TF, Lager KM, Alt DP, Delwart E, Pogranichniy RM.

Arch Virol. 2015 Jan;160(1):353-8. doi: 10.1007/s00705-014-2234-9. Epub 2014 Sep 24.

PMID:
25248627
34.

Development of a real-time PCR for the detection of pathogenic Leptospira spp. in California sea lions.

Wu Q, Prager KC, Goldstein T, Alt DP, Galloway RL, Zuerner RL, Lloyd-Smith JO, Schwacke L.

Dis Aquat Organ. 2014 Aug 11;110(3):165-72. doi: 10.3354/dao02752.

35.

Carbadox has both temporary and lasting effects on the swine gut microbiota.

Looft T, Allen HK, Casey TA, Alt DP, Stanton TB.

Front Microbiol. 2014 Jun 10;5:276. doi: 10.3389/fmicb.2014.00276. eCollection 2014.

36.

Identification of a novel single-stranded circular DNA virus in pig feces.

Cheung AK, Ng TF, Lager KM, Alt DP, Delwart EL, Pogranichniy RM.

Genome Announc. 2014 May 1;2(2). pii: e00347-14. doi: 10.1128/genomeA.00347-14.

37.

Unique circovirus-like genome detected in pig feces.

Cheung AK, Ng TF, Lager KM, Alt DP, Delwart EL, Pogranichniy RM.

Genome Announc. 2014 Apr 10;2(2). pii: e00251-14. doi: 10.1128/genomeA.00251-14.

38.

Bacteria, phages and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations.

Looft T, Allen HK, Cantarel BL, Levine UY, Bayles DO, Alt DP, Henrissat B, Stanton TB.

ISME J. 2014 Aug;8(8):1566-76. doi: 10.1038/ismej.2014.12. Epub 2014 Feb 13.

39.

Biochemical and molecular characterization of Treponema phagedenis-like spirochetes isolated from a bovine digital dermatitis lesion.

Wilson-Welder JH, Elliott MK, Zuerner RL, Bayles DO, Alt DP, Stanton TB.

BMC Microbiol. 2013 Dec 5;13:280. doi: 10.1186/1471-2180-13-280.

40.

Biochemical and physical signal gradients in hydrogels to control stem cell behavior.

Jeon O, Alt DS, Linderman SW, Alsberg E.

Adv Mater. 2013 Nov 26;25(44):6366-72. doi: 10.1002/adma.201302364. Epub 2013 Aug 25.

41.

Report on the international workshop on alternative methods for Leptospira vaccine potency testing: state of the science and the way forward.

Stokes W, Srinivas G, McFarland R, Kulpa-Eddy J, Casey W, Walker A, Draayer H, Sebring R, Brown K, Balks E, Stirling C, Klaasen E, Hill R, Rippke B, Ruby K, Alt D, Mukhopadhyay S, Kojima H, Johnson N, Rinckel L, Doelling V, Jones B.

Biologicals. 2013 Sep;41(5):279-94. doi: 10.1016/j.biologicals.2013.06.013. Epub 2013 Jul 23.

PMID:
23890729
42.

Expansion of the in vitro assay for Leptospira potency testing to other serovars: case study with Leptospira Hardjo.

Alt DP, Wilson-Welder J.

Biologicals. 2013 Sep;41(5):323-4. doi: 10.1016/j.biologicals.2013.06.003. Epub 2013 Jul 6. Review.

PMID:
23838569
43.

A divergent clade of circular single-stranded DNA viruses from pig feces.

Cheung AK, Ng TF, Lager KM, Bayles DO, Alt DP, Delwart EL, Pogranichniy RM, Kehrli ME Jr.

Arch Virol. 2013 Oct;158(10):2157-62. doi: 10.1007/s00705-013-1701-z. Epub 2013 Apr 24.

44.

Profiling the gastrointestinal microbiota in response to Salmonella: low versus high Salmonella shedding in the natural porcine host.

Bearson SM, Allen HK, Bearson BL, Looft T, Brunelle BW, Kich JD, Tuggle CK, Bayles DO, Alt D, Levine UY, Stanton TB.

Infect Genet Evol. 2013 Jun;16:330-40. doi: 10.1016/j.meegid.2013.03.022. Epub 2013 Mar 25.

PMID:
23535116
45.

Asymptomatic and chronic carriage of Leptospira interrogans serovar Pomona in California sea lions (Zalophus californianus).

Prager KC, Greig DJ, Alt DP, Galloway RL, Hornsby RL, Palmer LJ, Soper J, Wu Q, Zuerner RL, Gulland FM, Lloyd-Smith JO.

Vet Microbiol. 2013 May 31;164(1-2):177-83. doi: 10.1016/j.vetmic.2013.01.032. Epub 2013 Feb 4.

PMID:
23419822
46.

Diversity of viruses detected by deep sequencing in pigs from a common background.

Lager KM, Ng TF, Bayles DO, Alt DP, Delwart EL, Cheung AK.

J Vet Diagn Invest. 2012 Nov;24(6):1177-9. doi: 10.1177/1040638712463212. Epub 2012 Oct 10.

PMID:
23051826
47.

Genome sequencing of ovine isolates of Mycobacterium avium subspecies paratuberculosis offers insights into host association.

Bannantine JP, Wu CW, Hsu C, Zhou S, Schwartz DC, Bayles DO, Paustian ML, Alt DP, Sreevatsan S, Kapur V, Talaat AM.

BMC Genomics. 2012 Mar 12;13:89. doi: 10.1186/1471-2164-13-89.

48.

The effect of oxidation on the degradation of photocrosslinkable alginate hydrogels.

Jeon O, Alt DS, Ahmed SM, Alsberg E.

Biomaterials. 2012 May;33(13):3503-14. doi: 10.1016/j.biomaterials.2012.01.041. Epub 2012 Feb 13.

49.

In-feed antibiotic effects on the swine intestinal microbiome.

Looft T, Johnson TA, Allen HK, Bayles DO, Alt DP, Stedtfeld RD, Sul WJ, Stedtfeld TM, Chai B, Cole JR, Hashsham SA, Tiedje JM, Stanton TB.

Proc Natl Acad Sci U S A. 2012 Jan 31;109(5):1691-6. doi: 10.1073/pnas.1120238109. Epub 2012 Jan 17.

50.

Antibiotics in feed induce prophages in swine fecal microbiomes.

Allen HK, Looft T, Bayles DO, Humphrey S, Levine UY, Alt D, Stanton TB.

MBio. 2011 Nov 29;2(6). pii: e00260-11. doi: 10.1128/mBio.00260-11. Print 2011.

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