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Items: 5

1.

MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples.

LaPierre N, Mangul S, Alser M, Mandric I, Wu NC, Koslicki D, Eskin E.

BMC Genomics. 2019 Jun 6;20(Suppl 5):423. doi: 10.1186/s12864-019-5699-9.

2.

Adaptation of a Mice Doppler Echocardiography Platform to Measure Cardiac Flow Velocities for Embryonic Chicken and Adult Zebrafish.

Benslimane FM, Alser M, Zakaria ZZ, Sharma A, Abdelrahman HA, Yalcin HC.

Front Bioeng Biotechnol. 2019 May 14;7:96. doi: 10.3389/fbioe.2019.00096. eCollection 2019.

3.

Shouji: A Fast and Efficient Pre-Alignment Filter for Sequence Alignment.

Alser M, Hassan H, Kumar A, Mutlu O, Alkan C.

Bioinformatics. 2019 Mar 28. pii: btz234. doi: 10.1093/bioinformatics/btz234. [Epub ahead of print]

PMID:
30923804
4.

GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies.

Kim JS, Senol Cali D, Xin H, Lee D, Ghose S, Alser M, Hassan H, Ergin O, Alkan C, Mutlu O.

BMC Genomics. 2018 May 9;19(Suppl 2):89. doi: 10.1186/s12864-018-4460-0.

5.

GateKeeper: a new hardware architecture for accelerating pre-alignment in DNA short read mapping.

Alser M, Hassan H, Xin H, Ergin O, Mutlu O, Alkan C.

Bioinformatics. 2017 Nov 1;33(21):3355-3363. doi: 10.1093/bioinformatics/btx342.

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