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Items: 47

1.

Large-scale metabolite QTL analysis provides new insights for high-quality maize improvement.

Li K, Wen W, Alseekh S, Yang X, Guo H, Li W, Wang L, Pan Q, Zhan W, Liu J, Li Y, Wu X, Brotman Y, Willmitzer L, Li J, Fernie AR, Yan J.

Plant J. 2019 Mar 19. doi: 10.1111/tpj.14317. [Epub ahead of print]

PMID:
30888713
2.

Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds.

Nunes-Nesi A, Alseekh S, de Oliveira Silva FM, Omranian N, Lichtenstein G, Mirnezhad M, González RRR, Garcia JSY, Conte M, Leiss KA, Klinkhamer PGL, Nikoloski Z, Carrari F, Fernie AR.

Metabolomics. 2019 Mar 15;15(4):46. doi: 10.1007/s11306-019-1503-8.

PMID:
30874962
3.

Crop metabolomics: from diagnostics to assisted breeding.

Alseekh S, Bermudez L, de Haro LA, Fernie AR, Carrari F.

Metabolomics. 2018 Nov 3;14(11):148. doi: 10.1007/s11306-018-1446-5.

PMID:
30830402
4.

Arabidopsis RCD1 coordinates chloroplast and mitochondrial functions through interaction with ANAC transcription factors.

Shapiguzov A, Vainonen JP, Hunter K, Tossavainen H, Tiwari A, Järvi S, Hellman M, Aarabi F, Alseekh S, Wybouw B, Van Der Kelen K, Nikkanen L, Krasensky-Wrzaczek J, Sipari N, Keinänen M, Tyystjärvi E, Rintamäki E, De Rybel B, Salojärvi J, Van Breusegem F, Fernie AR, Brosché M, Permi P, Aro EM, Wrzaczek M, Kangasjärvi J.

Elife. 2019 Feb 15;8. pii: e43284. doi: 10.7554/eLife.43284.

5.

Extensive variations in diurnal growth patterns and metabolism amongst Ulva spp strains.

Fort A, Lebrault M, Allaire M, Esteves-Ferreira AA, McHale M, Lopez F, Farinas Franco JM, Alseekh S, Fernie AR, Sulpice R.

Plant Physiol. 2019 Feb 12. pii: pp.01513.2018. doi: 10.1104/pp.18.01513. [Epub ahead of print]

6.

Branched-Chain Amino Acid Catabolism Impacts Triacylglycerol Homeostasis in Chlamydomonas reinhardtii.

Liang Y, Kong F, Torres Romero I, Burlacot A, Cuiné S, Legeret B, Billon E, Brotman Y, Alseekh S, Fernie AR, Beisson F, Peltier G, Li-Beisson Y.

Plant Physiol. 2019 Feb 6. pii: pp.01584.2018. doi: 10.1104/pp.18.01584. [Epub ahead of print]

7.

In vivo detection of protein cysteine sulfenylation in plastids.

De Smet B, Willems P, Fernandez-Fernandez AD, Alseekh S, Fernie AR, Messens J, Van Breusegem F.

Plant J. 2019 Feb;97(4):765-778. doi: 10.1111/tpj.14146. Epub 2018 Dec 18.

PMID:
30394608
8.

A Tomato Tocopherol-Binding Protein Sheds Light on Intracellular α-Tocopherol Metabolism in Plants.

Bermúdez L, Del Pozo T, Silvestre Lira B, de Godoy F, Boos I, Romanò C, Previtali V, Almeida J, Bréhélin C, Asis R, Quadrana L, Demarco D, Alseekh S, Salinas Gamboa R, Pérez-Flores L, Dominguez PG, Rothan C, Fernie AR, González M, Stocker A, Hemmerle A, Clausen MH, Carrari F, Rossi M.

Plant Cell Physiol. 2018 Nov 1;59(11):2188-2203. doi: 10.1093/pcp/pcy191.

PMID:
30239816
9.

A Solanum neorickii introgression population providing a powerful complement to the extensively characterized Solanum pennellii population.

Brog YM, Osorio S, Yichie Y, Alseekh S, Bensal E, Kochevenko A, Zamir D, Fernie AR.

Plant J. 2019 Jan;97(2):391-403. doi: 10.1111/tpj.14095. Epub 2018 Oct 23.

PMID:
30230636
10.

Interorganelle Communication: Peroxisomal MALATE DEHYDROGENASE2 Connects Lipid Catabolism to Photosynthesis through Redox Coupling in Chlamydomonas.

Kong F, Burlacot A, Liang Y, Légeret B, Alseekh S, Brotman Y, Fernie AR, Krieger-Liszkay A, Beisson F, Peltier G, Li-Beisson Y.

Plant Cell. 2018 Aug;30(8):1824-1847. doi: 10.1105/tpc.18.00361. Epub 2018 Jul 11.

11.

Quantitative Trait Loci Analysis Identifies a Prominent Gene Involved in the Production of Fatty Acid-Derived Flavor Volatiles in Tomato.

Garbowicz K, Liu Z, Alseekh S, Tieman D, Taylor M, Kuhalskaya A, Ofner I, Zamir D, Klee HJ, Fernie AR, Brotman Y.

Mol Plant. 2018 Sep 10;11(9):1147-1165. doi: 10.1016/j.molp.2018.06.003. Epub 2018 Jun 28.

PMID:
29960108
12.

Abscisic acid, cold and salt stimulate conserved metabolic regulation in the moss Physcomitrella patens.

Arif MA, Alseekh S, Harb J, Fernie A, Frank W.

Plant Biol (Stuttg). 2018 Nov;20(6):1014-1022. doi: 10.1111/plb.12871. Epub 2018 Jul 25.

PMID:
29943488
13.

Defining the convergence of ethylene and auxin signaling in tomato.

Fernie AR, Alseekh S.

New Phytol. 2018 Jul;219(2):479-481. doi: 10.1111/nph.15251. No abstract available.

PMID:
29927493
14.

Tecia solanivora infestation increases tuber starch accumulation in Pastusa Suprema potatoes.

Kumar P, Garrido E, Zhao K, Zheng Y, Alseekh S, Vargas-Ortiz E, Fernie AR, Fei Z, Poveda K, Jander G.

J Integr Plant Biol. 2018 Nov;60(11):1083-1096. doi: 10.1111/jipb.12675. Epub 2018 Aug 15.

PMID:
29888549
15.

The Integration of Metabolomics and Next-Generation Sequencing Data to Elucidate the Pathways of Natural Product Metabolism in Medicinal Plants.

Scossa F, Benina M, Alseekh S, Zhang Y, Fernie AR.

Planta Med. 2018 Aug;84(12-13):855-873. doi: 10.1055/a-0630-1899. Epub 2018 May 29. Review.

PMID:
29843183
16.

The Extra-Pathway Interactome of the TCA Cycle: Expected and Unexpected Metabolic Interactions.

Zhang Y, Swart C, Alseekh S, Scossa F, Jiang L, Obata T, Graf A, Fernie AR.

Plant Physiol. 2018 Jul;177(3):966-979. doi: 10.1104/pp.17.01687. Epub 2018 May 23.

17.

Molecular Mechanisms Preventing Senescence in Response to Prolonged Darkness in a Desiccation-Tolerant Plant.

Durgud M, Gupta S, Ivanov I, Omidbakhshfard MA, Benina M, Alseekh S, Staykov N, Hauenstein M, Dijkwel PP, Hörtensteiner S, Toneva V, Brotman Y, Fernie AR, Mueller-Roeber B, Gechev TS.

Plant Physiol. 2018 Jul;177(3):1319-1338. doi: 10.1104/pp.18.00055. Epub 2018 May 22.

18.

Guidelines for Sample Normalization to Minimize Batch Variation for Large-Scale Metabolic Profiling of Plant Natural Genetic Variance.

Alseekh S, Wu S, Brotman Y, Fernie AR.

Methods Mol Biol. 2018;1778:33-46. doi: 10.1007/978-1-4939-7819-9_3.

PMID:
29761429
19.

Metabolomics 20 years on: what have we learned and what hurdles remain?

Alseekh S, Fernie AR.

Plant J. 2018 Jun;94(6):933-942. doi: 10.1111/tpj.13950. Review.

PMID:
29734513
20.

A plastidial pantoate transporter with a potential role in pantothenate synthesis.

Huang L, Pyc M, Alseekh S, McCarty DR, de Crécy-Lagard V, Gregory JF 3rd, Henry CS, Fernie AR, Mullen RT, Hanson AD.

Biochem J. 2018 Feb 28;475(4):813-825. doi: 10.1042/BCJ20170883.

PMID:
29382740
21.

An integrated multi-layered analysis of the metabolic networks of different tissues uncovers key genetic components of primary metabolism in maize.

Wen W, Jin M, Li K, Liu H, Xiao Y, Zhao M, Alseekh S, Li W, de Abreu E Lima F, Brotman Y, Willmitzer L, Fernie AR, Yan J.

Plant J. 2018 Mar;93(6):1116-1128. doi: 10.1111/tpj.13835. Epub 2018 Feb 24.

22.

Inheritance patterns in metabolism and growth in diallel crosses of Arabidopsis thaliana from a single growth habitat.

Rodriguez Cubillos AE, Tong H, Alseekh S, de Abreu E Lima F, Yu J, Fernie AR, Nikoloski Z, Laitinen RAE.

Heredity (Edinb). 2018 May;120(5):463-473. doi: 10.1038/s41437-017-0030-5. Epub 2017 Dec 13.

PMID:
29234160
23.

STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1.

Nietzsche M, Guerra T, Alseekh S, Wiermer M, Sonnewald S, Fernie AR, Börnke F.

Plant Physiol. 2018 Feb;176(2):1773-1792. doi: 10.1104/pp.17.01461. Epub 2017 Nov 30.

24.

Canalization of Tomato Fruit Metabolism.

Alseekh S, Tong H, Scossa F, Brotman Y, Vigroux F, Tohge T, Ofner I, Zamir D, Nikoloski Z, Fernie AR.

Plant Cell. 2017 Nov;29(11):2753-2765. doi: 10.1105/tpc.17.00367. Epub 2017 Nov 1.

25.

The genetic architecture of photosynthesis and plant growth-related traits in tomato.

de Oliveira Silva FM, Lichtenstein G, Alseekh S, Rosado-Souza L, Conte M, Suguiyama VF, Lira BS, Fanourakis D, Usadel B, Bhering LL, DaMatta FM, Sulpice R, Araújo WL, Rossi M, de Setta N, Fernie AR, Carrari F, Nunes-Nesi A.

Plant Cell Environ. 2018 Feb;41(2):327-341. doi: 10.1111/pce.13084. Epub 2017 Nov 29.

PMID:
29044606
26.

De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing.

Schmidt MH, Vogel A, Denton AK, Istace B, Wormit A, van de Geest H, Bolger ME, Alseekh S, Maß J, Pfaff C, Schurr U, Chetelat R, Maumus F, Aury JM, Koren S, Fernie AR, Zamir D, Bolger AM, Usadel B.

Plant Cell. 2017 Oct;29(10):2336-2348. doi: 10.1105/tpc.17.00521. Epub 2017 Oct 12.

27.

Dose-dependent interactions between two loci trigger altered shoot growth in BG-5 × Krotzenburg-0 (Kro-0) hybrids of Arabidopsis thaliana.

Alhajturki D, Muralidharan S, Nurmi M, Rowan BA, Lunn JE, Boldt H, Salem MA, Alseekh S, Jorzig C, Feil R, Giavalisco P, Fernie AR, Weigel D, Laitinen RAE.

New Phytol. 2018 Jan;217(1):392-406. doi: 10.1111/nph.14781. Epub 2017 Sep 14.

28.

The genome and phenome of the green alga Chloroidium sp. UTEX 3007 reveal adaptive traits for desert acclimatization.

Nelson DR, Khraiwesh B, Fu W, Alseekh S, Jaiswal A, Chaiboonchoe A, Hazzouri KM, O'Connor MJ, Butterfoss GL, Drou N, Rowe JD, Harb J, Fernie AR, Gunsalus KC, Salehi-Ashtiani K.

Elife. 2017 Jun 17;6. pii: e25783. doi: 10.7554/eLife.25783.

29.

Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.

Shahnejat-Bushehri S, Allu AD, Mehterov N, Thirumalaikumar VP, Alseekh S, Fernie AR, Mueller-Roeber B, Balazadeh S.

Front Plant Sci. 2017 Mar 7;8:214. doi: 10.3389/fpls.2017.00214. eCollection 2017.

30.

Starch Synthase 4 and Plastidal Phosphorylase Differentially Affect Starch Granule Number and Morphology.

Malinova I, Alseekh S, Feil R, Fernie AR, Baumann O, Schöttler MA, Lunn JE, Fettke J.

Plant Physiol. 2017 May;174(1):73-85. doi: 10.1104/pp.16.01859. Epub 2017 Mar 8.

31.

Overexpression of the triose phosphate translocator (TPT) complements the abnormal metabolism and development of plastidial glycolytic glyceraldehyde-3-phosphate dehydrogenase mutants.

Flores-Tornero M, Anoman AD, Rosa-Téllez S, Toujani W, Weber AP, Eisenhut M, Kurz S, Alseekh S, Fernie AR, Muñoz-Bertomeu J, Ros R.

Plant J. 2017 Mar;89(6):1146-1158. doi: 10.1111/tpj.13452. Epub 2017 Feb 11.

32.

Identification of a Solanum pennellii Chromosome 4 Fruit Flavor and Nutritional Quality-Associated Metabolite QTL.

Liu Z, Alseekh S, Brotman Y, Zheng Y, Fei Z, Tieman DM, Giovannoni JJ, Fernie AR, Klee HJ.

Front Plant Sci. 2016 Nov 9;7:1671. eCollection 2016.

33.

Rapid identification of causal mutations in tomato EMS populations via mapping-by-sequencing.

Garcia V, Bres C, Just D, Fernandez L, Tai FW, Mauxion JP, Le Paslier MC, Bérard A, Brunel D, Aoki K, Alseekh S, Fernie AR, Fraser PD, Rothan C.

Nat Protoc. 2016 Dec;11(12):2401-2418. doi: 10.1038/nprot.2016.143. Epub 2016 Nov 3.

PMID:
27809315
34.

Combined Use of Genome-Wide Association Data and Correlation Networks Unravels Key Regulators of Primary Metabolism in Arabidopsis thaliana.

Wu S, Alseekh S, Cuadros-Inostroza Á, Fusari CM, Mutwil M, Kooke R, Keurentjes JB, Fernie AR, Willmitzer L, Brotman Y.

PLoS Genet. 2016 Oct 19;12(10):e1006363. doi: 10.1371/journal.pgen.1006363. eCollection 2016 Oct.

35.

Lack of GLYCOLATE OXIDASE1, but Not GLYCOLATE OXIDASE2, Attenuates the Photorespiratory Phenotype of CATALASE2-Deficient Arabidopsis.

Kerchev P, Waszczak C, Lewandowska A, Willems P, Shapiguzov A, Li Z, Alseekh S, Mühlenbock P, Hoeberichts FA, Huang J, Van Der Kelen K, Kangasjärvi J, Fernie AR, De Smet R, Van de Peer Y, Messens J, Van Breusegem F.

Plant Physiol. 2016 Jul;171(3):1704-19. doi: 10.1104/pp.16.00359. Epub 2016 May 25.

36.

Multi-level engineering facilitates the production of phenylpropanoid compounds in tomato.

Zhang Y, Butelli E, Alseekh S, Tohge T, Rallapalli G, Luo J, Kawar PG, Hill L, Santino A, Fernie AR, Martin C.

Nat Commun. 2015 Oct 26;6:8635. doi: 10.1038/ncomms9635.

37.

Profiling of primary metabolites and flavonols in leaves of two table grape varieties collected from semiarid and temperate regions.

Harb J, Alseekh S, Tohge T, Fernie AR.

Phytochemistry. 2015 Sep;117:444-455. doi: 10.1016/j.phytochem.2015.07.013. Epub 2015 Jul 17.

PMID:
26196939
38.

Genetic Determinants of the Network of Primary Metabolism and Their Relationships to Plant Performance in a Maize Recombinant Inbred Line Population.

Wen W, Li K, Alseekh S, Omranian N, Zhao L, Zhou Y, Xiao Y, Jin M, Yang N, Liu H, Florian A, Li W, Pan Q, Nikoloski Z, Yan J, Fernie AR.

Plant Cell. 2015 Jul;27(7):1839-56. doi: 10.1105/tpc.15.00208. Epub 2015 Jul 17.

39.

Identification and mode of inheritance of quantitative trait loci for secondary metabolite abundance in tomato.

Alseekh S, Tohge T, Wendenberg R, Scossa F, Omranian N, Li J, Kleessen S, Giavalisco P, Pleban T, Mueller-Roeber B, Zamir D, Nikoloski Z, Fernie AR.

Plant Cell. 2015 Mar;27(3):485-512. doi: 10.1105/tpc.114.132266. Epub 2015 Mar 13.

40.

Global analysis of the role of autophagy in cellular metabolism and energy homeostasis in Arabidopsis seedlings under carbon starvation.

Avin-Wittenberg T, Bajdzienko K, Wittenberg G, Alseekh S, Tohge T, Bock R, Giavalisco P, Fernie AR.

Plant Cell. 2015 Feb;27(2):306-22. doi: 10.1105/tpc.114.134205. Epub 2015 Feb 3.

41.

Reduction of the cytosolic phosphoglucomutase in Arabidopsis reveals impact on plant growth, seed and root development, and carbohydrate partitioning.

Malinova I, Kunz HH, Alseekh S, Herbst K, Fernie AR, Gierth M, Fettke J.

PLoS One. 2014 Nov 17;9(11):e112468. doi: 10.1371/journal.pone.0112468. eCollection 2014.

42.

The genome of the stress-tolerant wild tomato species Solanum pennellii.

Bolger A, Scossa F, Bolger ME, Lanz C, Maumus F, Tohge T, Quesneville H, Alseekh S, Sørensen I, Lichtenstein G, Fich EA, Conte M, Keller H, Schneeberger K, Schwacke R, Ofner I, Vrebalov J, Xu Y, Osorio S, Aflitos SA, Schijlen E, Jiménez-Goméz JM, Ryngajllo M, Kimura S, Kumar R, Koenig D, Headland LR, Maloof JN, Sinha N, van Ham RC, Lankhorst RK, Mao L, Vogel A, Arsova B, Panstruga R, Fei Z, Rose JK, Zamir D, Carrari F, Giovannoni JJ, Weigel D, Usadel B, Fernie AR.

Nat Genet. 2014 Sep;46(9):1034-8. doi: 10.1038/ng.3046. Epub 2014 Jul 27.

PMID:
25064008
43.

On the regulation and function of secondary metabolism during fruit development and ripening.

Tohge T, Alseekh S, Fernie AR.

J Exp Bot. 2014 Aug;65(16):4599-611. doi: 10.1093/jxb/ert443. Epub 2014 Jan 20.

PMID:
24446507
44.

Double knockout mutants of Arabidopsis grown under normal conditions reveal that the plastidial phosphorylase isozyme participates in transitory starch metabolism.

Malinova I, Mahlow S, Alseekh S, Orawetz T, Fernie AR, Baumann O, Steup M, Fettke J.

Plant Physiol. 2014 Feb;164(2):907-21. doi: 10.1104/pp.113.227843. Epub 2013 Dec 3.

45.

Functional characterization of the plastidial 3-phosphoglycerate dehydrogenase family in Arabidopsis.

Toujani W, Muñoz-Bertomeu J, Flores-Tornero M, Rosa-Téllez S, Anoman AD, Alseekh S, Fernie AR, Ros R.

Plant Physiol. 2013 Nov;163(3):1164-78. doi: 10.1104/pp.113.226720. Epub 2013 Sep 20.

46.

Resolution by recombination: breaking up Solanum pennellii introgressions.

Alseekh S, Ofner I, Pleban T, Tripodi P, Di Dato F, Cammareri M, Mohammad A, Grandillo S, Fernie AR, Zamir D.

Trends Plant Sci. 2013 Oct;18(10):536-8. doi: 10.1016/j.tplants.2013.08.003. Epub 2013 Sep 9.

PMID:
24029406
47.

Galacturonosyltransferase 4 silencing alters pectin composition and carbon partitioning in tomato.

de Godoy F, Bermúdez L, Lira BS, de Souza AP, Elbl P, Demarco D, Alseekh S, Insani M, Buckeridge M, Almeida J, Grigioni G, Fernie AR, Carrari F, Rossi M.

J Exp Bot. 2013 May;64(8):2449-66. doi: 10.1093/jxb/ert106. Epub 2013 Apr 18.

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