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Items: 1 to 50 of 56

1.

Metabolomics in the Context of Plant Natural Products Research: From Sample Preparation to Metabolite Analysis.

Salem MA, Perez de Souza L, Serag A, Fernie AR, Farag MA, Ezzat SM, Alseekh S.

Metabolites. 2020 Jan 15;10(1). pii: E37. doi: 10.3390/metabo10010037. Review.

2.

Plasticity in metabolism underpins local responses to nitrogen in Arabidopsis thaliana populations.

Pandey PK, Yu J, Omranian N, Alseekh S, Vaid N, Fernie AR, Nikoloski Z, Laitinen RAE.

Plant Direct. 2019 Nov 29;3(11):e00186. doi: 10.1002/pld3.186. eCollection 2019 Nov.

3.

PGDH family genes differentially affect Arabidopsis tolerance to salt stress.

Rosa-Téllez S, Anoman AD, Alcántara-Enguídanos A, Garza-Aguirre RA, Alseekh S, Ros R.

Plant Sci. 2020 Jan;290:110284. doi: 10.1016/j.plantsci.2019.110284. Epub 2019 Sep 26.

PMID:
31779918
4.

MicroRNA-Mediated Metabolic Reprograming in Renal Cancer.

Bogusławska J, Popławski P, Alseekh S, Koblowska M, Iwanicka-Nowicka R, Rybicka B, Kędzierska H, Głuchowska K, Hanusek K, Tański Z, Fernie AR, Piekiełko-Witkowska A.

Cancers (Basel). 2019 Nov 20;11(12). pii: E1825. doi: 10.3390/cancers11121825.

5.

Mass Spectrometry-Based Untargeted Plant Metabolomics.

Perez de Souza L, Alseekh S, Naake T, Fernie A.

Curr Protoc Plant Biol. 2019 Dec;4(4):e20100. doi: 10.1002/cppb.20100.

PMID:
31743625
6.

Exploring gene networks in two sunflower lines with contrasting leaf senescence phenotype using a system biology approach.

Moschen S, Marino J, Nicosia S, Higgins J, Alseekh S, Astigueta F, Bengoa Luoni S, Rivarola M, Fernie AR, Blanchet N, Langlade NB, Paniego N, Fernández P, Heinz RA.

BMC Plant Biol. 2019 Oct 24;19(1):446. doi: 10.1186/s12870-019-2021-6.

7.

Construction and applications of a B vitamin genetic resource for investigation of vitamin-dependent metabolism in maize.

Suzuki M, Wu S, Mimura M, Alseekh S, Fernie AR, Hanson AD, McCarty DR.

Plant J. 2020 Jan;101(2):442-454. doi: 10.1111/tpj.14535. Epub 2019 Nov 3.

PMID:
31520508
8.

Posttranslational Modification of the NADP-Malic Enzyme Involved in C4 Photosynthesis Modulates the Enzymatic Activity during the Day.

Bovdilova A, Alexandre BM, Höppner A, Luís IM, Alvarez CE, Bickel D, Gohlke H, Decker C, Nagel-Steger L, Alseekh S, Fernie AR, Drincovich MF, Abreu IA, Maurino VG.

Plant Cell. 2019 Oct;31(10):2525-2539. doi: 10.1105/tpc.19.00406. Epub 2019 Jul 30.

PMID:
31363039
9.

The Structure and Function of Major Plant Metabolite Modifications.

Wang S, Alseekh S, Fernie AR, Luo J.

Mol Plant. 2019 Jul 1;12(7):899-919. doi: 10.1016/j.molp.2019.06.001. Epub 2019 Jun 11. Review.

PMID:
31200079
10.

Large-scale metabolite quantitative trait locus analysis provides new insights for high-quality maize improvement.

Li K, Wen W, Alseekh S, Yang X, Guo H, Li W, Wang L, Pan Q, Zhan W, Liu J, Li Y, Wu X, Brotman Y, Willmitzer L, Li J, Fernie AR, Yan J.

Plant J. 2019 Jul;99(2):216-230. doi: 10.1111/tpj.14317. Epub 2019 Apr 16.

PMID:
30888713
11.

Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds.

Nunes-Nesi A, Alseekh S, de Oliveira Silva FM, Omranian N, Lichtenstein G, Mirnezhad M, González RRR, Sabio Y Garcia J, Conte M, Leiss KA, Klinkhamer PGL, Nikoloski Z, Carrari F, Fernie AR.

Metabolomics. 2019 Mar 15;15(4):46. doi: 10.1007/s11306-019-1503-8.

12.

Crop metabolomics: from diagnostics to assisted breeding.

Alseekh S, Bermudez L, de Haro LA, Fernie AR, Carrari F.

Metabolomics. 2018 Nov 3;14(11):148. doi: 10.1007/s11306-018-1446-5. Review.

PMID:
30830402
13.

Arabidopsis RCD1 coordinates chloroplast and mitochondrial functions through interaction with ANAC transcription factors.

Shapiguzov A, Vainonen JP, Hunter K, Tossavainen H, Tiwari A, Järvi S, Hellman M, Aarabi F, Alseekh S, Wybouw B, Van Der Kelen K, Nikkanen L, Krasensky-Wrzaczek J, Sipari N, Keinänen M, Tyystjärvi E, Rintamäki E, De Rybel B, Salojärvi J, Van Breusegem F, Fernie AR, Brosché M, Permi P, Aro EM, Wrzaczek M, Kangasjärvi J.

Elife. 2019 Feb 15;8. pii: e43284. doi: 10.7554/eLife.43284.

14.

Extensive Variations in Diurnal Growth Patterns and Metabolism Among Ulva spp. Strains.

Fort A, Lebrault M, Allaire M, Esteves-Ferreira AA, McHale M, Lopez F, Fariñas-Franco JM, Alseekh S, Fernie AR, Sulpice R.

Plant Physiol. 2019 May;180(1):109-123. doi: 10.1104/pp.18.01513. Epub 2019 Feb 12.

15.

Branched-Chain Amino Acid Catabolism Impacts Triacylglycerol Homeostasis in Chlamydomonas reinhardtii.

Liang Y, Kong F, Torres-Romero I, Burlacot A, Cuine S, Légeret B, Billon E, Brotman Y, Alseekh S, Fernie AR, Beisson F, Peltier G, Li-Beisson Y.

Plant Physiol. 2019 Apr;179(4):1502-1514. doi: 10.1104/pp.18.01584. Epub 2019 Feb 6.

16.

In vivo detection of protein cysteine sulfenylation in plastids.

De Smet B, Willems P, Fernandez-Fernandez AD, Alseekh S, Fernie AR, Messens J, Van Breusegem F.

Plant J. 2019 Feb;97(4):765-778. doi: 10.1111/tpj.14146. Epub 2018 Dec 18.

17.

A Tomato Tocopherol-Binding Protein Sheds Light on Intracellular α-Tocopherol Metabolism in Plants.

Bermúdez L, Del Pozo T, Silvestre Lira B, de Godoy F, Boos I, Romanò C, Previtali V, Almeida J, Bréhélin C, Asis R, Quadrana L, Demarco D, Alseekh S, Salinas Gamboa R, Pérez-Flores L, Dominguez PG, Rothan C, Fernie AR, González M, Stocker A, Hemmerle A, Clausen MH, Carrari F, Rossi M.

Plant Cell Physiol. 2018 Nov 1;59(11):2188-2203. doi: 10.1093/pcp/pcy191.

PMID:
30239816
18.

A Solanum neorickii introgression population providing a powerful complement to the extensively characterized Solanum pennellii population.

Brog YM, Osorio S, Yichie Y, Alseekh S, Bensal E, Kochevenko A, Zamir D, Fernie AR.

Plant J. 2019 Jan;97(2):391-403. doi: 10.1111/tpj.14095. Epub 2018 Oct 23.

19.

Interorganelle Communication: Peroxisomal MALATE DEHYDROGENASE2 Connects Lipid Catabolism to Photosynthesis through Redox Coupling in Chlamydomonas.

Kong F, Burlacot A, Liang Y, Légeret B, Alseekh S, Brotman Y, Fernie AR, Krieger-Liszkay A, Beisson F, Peltier G, Li-Beisson Y.

Plant Cell. 2018 Aug;30(8):1824-1847. doi: 10.1105/tpc.18.00361. Epub 2018 Jul 11.

20.

Quantitative Trait Loci Analysis Identifies a Prominent Gene Involved in the Production of Fatty Acid-Derived Flavor Volatiles in Tomato.

Garbowicz K, Liu Z, Alseekh S, Tieman D, Taylor M, Kuhalskaya A, Ofner I, Zamir D, Klee HJ, Fernie AR, Brotman Y.

Mol Plant. 2018 Sep 10;11(9):1147-1165. doi: 10.1016/j.molp.2018.06.003. Epub 2018 Jun 28.

21.

Abscisic acid, cold and salt stimulate conserved metabolic regulation in the moss Physcomitrella patens.

Arif MA, Alseekh S, Harb J, Fernie A, Frank W.

Plant Biol (Stuttg). 2018 Nov;20(6):1014-1022. doi: 10.1111/plb.12871. Epub 2018 Jul 25.

PMID:
29943488
22.

Defining the convergence of ethylene and auxin signaling in tomato.

Fernie AR, Alseekh S.

New Phytol. 2018 Jul;219(2):479-481. doi: 10.1111/nph.15251. No abstract available.

23.

Tecia solanivora infestation increases tuber starch accumulation in Pastusa Suprema potatoes.

Kumar P, Garrido E, Zhao K, Zheng Y, Alseekh S, Vargas-Ortiz E, Fernie AR, Fei Z, Poveda K, Jander G.

J Integr Plant Biol. 2018 Nov;60(11):1083-1096. doi: 10.1111/jipb.12675. Epub 2018 Aug 15.

PMID:
29888549
24.

The Integration of Metabolomics and Next-Generation Sequencing Data to Elucidate the Pathways of Natural Product Metabolism in Medicinal Plants.

Scossa F, Benina M, Alseekh S, Zhang Y, Fernie AR.

Planta Med. 2018 Aug;84(12-13):855-873. doi: 10.1055/a-0630-1899. Epub 2018 May 29. Review.

PMID:
29843183
25.

The Extra-Pathway Interactome of the TCA Cycle: Expected and Unexpected Metabolic Interactions.

Zhang Y, Swart C, Alseekh S, Scossa F, Jiang L, Obata T, Graf A, Fernie AR.

Plant Physiol. 2018 Jul;177(3):966-979. doi: 10.1104/pp.17.01687. Epub 2018 May 23.

26.

Molecular Mechanisms Preventing Senescence in Response to Prolonged Darkness in a Desiccation-Tolerant Plant.

Durgud M, Gupta S, Ivanov I, Omidbakhshfard MA, Benina M, Alseekh S, Staykov N, Hauenstein M, Dijkwel PP, Hörtensteiner S, Toneva V, Brotman Y, Fernie AR, Mueller-Roeber B, Gechev TS.

Plant Physiol. 2018 Jul;177(3):1319-1338. doi: 10.1104/pp.18.00055. Epub 2018 May 22.

27.

Guidelines for Sample Normalization to Minimize Batch Variation for Large-Scale Metabolic Profiling of Plant Natural Genetic Variance.

Alseekh S, Wu S, Brotman Y, Fernie AR.

Methods Mol Biol. 2018;1778:33-46. doi: 10.1007/978-1-4939-7819-9_3.

PMID:
29761429
28.

Metabolomics 20 years on: what have we learned and what hurdles remain?

Alseekh S, Fernie AR.

Plant J. 2018 Jun;94(6):933-942. doi: 10.1111/tpj.13950. Review.

29.

A plastidial pantoate transporter with a potential role in pantothenate synthesis.

Huang L, Pyc M, Alseekh S, McCarty DR, de Crécy-Lagard V, Gregory JF 3rd, Henry CS, Fernie AR, Mullen RT, Hanson AD.

Biochem J. 2018 Feb 28;475(4):813-825. doi: 10.1042/BCJ20170883.

PMID:
29382740
30.

An integrated multi-layered analysis of the metabolic networks of different tissues uncovers key genetic components of primary metabolism in maize.

Wen W, Jin M, Li K, Liu H, Xiao Y, Zhao M, Alseekh S, Li W, de Abreu E Lima F, Brotman Y, Willmitzer L, Fernie AR, Yan J.

Plant J. 2018 Mar;93(6):1116-1128. doi: 10.1111/tpj.13835. Epub 2018 Feb 24.

31.

Inheritance patterns in metabolism and growth in diallel crosses of Arabidopsis thaliana from a single growth habitat.

Rodriguez Cubillos AE, Tong H, Alseekh S, de Abreu E Lima F, Yu J, Fernie AR, Nikoloski Z, Laitinen RAE.

Heredity (Edinb). 2018 May;120(5):463-473. doi: 10.1038/s41437-017-0030-5. Epub 2017 Dec 13.

32.

STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1.

Nietzsche M, Guerra T, Alseekh S, Wiermer M, Sonnewald S, Fernie AR, Börnke F.

Plant Physiol. 2018 Feb;176(2):1773-1792. doi: 10.1104/pp.17.01461. Epub 2017 Nov 30.

33.

Canalization of Tomato Fruit Metabolism.

Alseekh S, Tong H, Scossa F, Brotman Y, Vigroux F, Tohge T, Ofner I, Zamir D, Nikoloski Z, Fernie AR.

Plant Cell. 2017 Nov;29(11):2753-2765. doi: 10.1105/tpc.17.00367. Epub 2017 Nov 1.

34.

The genetic architecture of photosynthesis and plant growth-related traits in tomato.

de Oliveira Silva FM, Lichtenstein G, Alseekh S, Rosado-Souza L, Conte M, Suguiyama VF, Lira BS, Fanourakis D, Usadel B, Bhering LL, DaMatta FM, Sulpice R, Araújo WL, Rossi M, de Setta N, Fernie AR, Carrari F, Nunes-Nesi A.

Plant Cell Environ. 2018 Feb;41(2):327-341. doi: 10.1111/pce.13084. Epub 2017 Nov 29.

PMID:
29044606
35.

De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing.

Schmidt MH, Vogel A, Denton AK, Istace B, Wormit A, van de Geest H, Bolger ME, Alseekh S, Maß J, Pfaff C, Schurr U, Chetelat R, Maumus F, Aury JM, Koren S, Fernie AR, Zamir D, Bolger AM, Usadel B.

Plant Cell. 2017 Oct;29(10):2336-2348. doi: 10.1105/tpc.17.00521. Epub 2017 Oct 12.

36.

Dose-dependent interactions between two loci trigger altered shoot growth in BG-5 × Krotzenburg-0 (Kro-0) hybrids of Arabidopsis thaliana.

Alhajturki D, Muralidharan S, Nurmi M, Rowan BA, Lunn JE, Boldt H, Salem MA, Alseekh S, Jorzig C, Feil R, Giavalisco P, Fernie AR, Weigel D, Laitinen RAE.

New Phytol. 2018 Jan;217(1):392-406. doi: 10.1111/nph.14781. Epub 2017 Sep 14.

37.

The genome and phenome of the green alga Chloroidium sp. UTEX 3007 reveal adaptive traits for desert acclimatization.

Nelson DR, Khraiwesh B, Fu W, Alseekh S, Jaiswal A, Chaiboonchoe A, Hazzouri KM, O'Connor MJ, Butterfoss GL, Drou N, Rowe JD, Harb J, Fernie AR, Gunsalus KC, Salehi-Ashtiani K.

Elife. 2017 Jun 17;6. pii: e25783. doi: 10.7554/eLife.25783.

38.

Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.

Shahnejat-Bushehri S, Allu AD, Mehterov N, Thirumalaikumar VP, Alseekh S, Fernie AR, Mueller-Roeber B, Balazadeh S.

Front Plant Sci. 2017 Mar 7;8:214. doi: 10.3389/fpls.2017.00214. eCollection 2017.

39.

Starch Synthase 4 and Plastidal Phosphorylase Differentially Affect Starch Granule Number and Morphology.

Malinova I, Alseekh S, Feil R, Fernie AR, Baumann O, Schöttler MA, Lunn JE, Fettke J.

Plant Physiol. 2017 May;174(1):73-85. doi: 10.1104/pp.16.01859. Epub 2017 Mar 8.

40.

Overexpression of the triose phosphate translocator (TPT) complements the abnormal metabolism and development of plastidial glycolytic glyceraldehyde-3-phosphate dehydrogenase mutants.

Flores-Tornero M, Anoman AD, Rosa-Téllez S, Toujani W, Weber AP, Eisenhut M, Kurz S, Alseekh S, Fernie AR, Muñoz-Bertomeu J, Ros R.

Plant J. 2017 Mar;89(6):1146-1158. doi: 10.1111/tpj.13452. Epub 2017 Feb 11.

41.

Identification of a Solanum pennellii Chromosome 4 Fruit Flavor and Nutritional Quality-Associated Metabolite QTL.

Liu Z, Alseekh S, Brotman Y, Zheng Y, Fei Z, Tieman DM, Giovannoni JJ, Fernie AR, Klee HJ.

Front Plant Sci. 2016 Nov 9;7:1671. eCollection 2016.

42.

Rapid identification of causal mutations in tomato EMS populations via mapping-by-sequencing.

Garcia V, Bres C, Just D, Fernandez L, Tai FW, Mauxion JP, Le Paslier MC, Bérard A, Brunel D, Aoki K, Alseekh S, Fernie AR, Fraser PD, Rothan C.

Nat Protoc. 2016 Dec;11(12):2401-2418. doi: 10.1038/nprot.2016.143. Epub 2016 Nov 3.

PMID:
27809315
43.

Combined Use of Genome-Wide Association Data and Correlation Networks Unravels Key Regulators of Primary Metabolism in Arabidopsis thaliana.

Wu S, Alseekh S, Cuadros-Inostroza Á, Fusari CM, Mutwil M, Kooke R, Keurentjes JB, Fernie AR, Willmitzer L, Brotman Y.

PLoS Genet. 2016 Oct 19;12(10):e1006363. doi: 10.1371/journal.pgen.1006363. eCollection 2016 Oct.

44.

Lack of GLYCOLATE OXIDASE1, but Not GLYCOLATE OXIDASE2, Attenuates the Photorespiratory Phenotype of CATALASE2-Deficient Arabidopsis.

Kerchev P, Waszczak C, Lewandowska A, Willems P, Shapiguzov A, Li Z, Alseekh S, Mühlenbock P, Hoeberichts FA, Huang J, Van Der Kelen K, Kangasjärvi J, Fernie AR, De Smet R, Van de Peer Y, Messens J, Van Breusegem F.

Plant Physiol. 2016 Jul;171(3):1704-19. doi: 10.1104/pp.16.00359. Epub 2016 May 25.

45.

Multi-level engineering facilitates the production of phenylpropanoid compounds in tomato.

Zhang Y, Butelli E, Alseekh S, Tohge T, Rallapalli G, Luo J, Kawar PG, Hill L, Santino A, Fernie AR, Martin C.

Nat Commun. 2015 Oct 26;6:8635. doi: 10.1038/ncomms9635.

46.

Profiling of primary metabolites and flavonols in leaves of two table grape varieties collected from semiarid and temperate regions.

Harb J, Alseekh S, Tohge T, Fernie AR.

Phytochemistry. 2015 Sep;117:444-455. doi: 10.1016/j.phytochem.2015.07.013. Epub 2015 Jul 17.

PMID:
26196939
47.

Genetic Determinants of the Network of Primary Metabolism and Their Relationships to Plant Performance in a Maize Recombinant Inbred Line Population.

Wen W, Li K, Alseekh S, Omranian N, Zhao L, Zhou Y, Xiao Y, Jin M, Yang N, Liu H, Florian A, Li W, Pan Q, Nikoloski Z, Yan J, Fernie AR.

Plant Cell. 2015 Jul;27(7):1839-56. doi: 10.1105/tpc.15.00208. Epub 2015 Jul 17.

48.

Identification and mode of inheritance of quantitative trait loci for secondary metabolite abundance in tomato.

Alseekh S, Tohge T, Wendenberg R, Scossa F, Omranian N, Li J, Kleessen S, Giavalisco P, Pleban T, Mueller-Roeber B, Zamir D, Nikoloski Z, Fernie AR.

Plant Cell. 2015 Mar;27(3):485-512. doi: 10.1105/tpc.114.132266. Epub 2015 Mar 13.

49.

Global analysis of the role of autophagy in cellular metabolism and energy homeostasis in Arabidopsis seedlings under carbon starvation.

Avin-Wittenberg T, Bajdzienko K, Wittenberg G, Alseekh S, Tohge T, Bock R, Giavalisco P, Fernie AR.

Plant Cell. 2015 Feb;27(2):306-22. doi: 10.1105/tpc.114.134205. Epub 2015 Feb 3.

50.

Reduction of the cytosolic phosphoglucomutase in Arabidopsis reveals impact on plant growth, seed and root development, and carbohydrate partitioning.

Malinova I, Kunz HH, Alseekh S, Herbst K, Fernie AR, Gierth M, Fettke J.

PLoS One. 2014 Nov 17;9(11):e112468. doi: 10.1371/journal.pone.0112468. eCollection 2014.

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