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Items: 34

1.

Introduction of 'Generalized Genomic Signatures' for the quantification of neighbour preferences leads to taxonomy- and functionality-based distinction among sequences.

Apostolou-Karampelis K, Polychronopoulos D, Almirantis Y.

Sci Rep. 2019 Feb 8;9(1):1700. doi: 10.1038/s41598-018-38157-3.

2.

Ultra-High Dilutions and Homeopathy: Can They Be Explained without Non-Local Theory?

Almirantis Y, Tsitinidis K.

Homeopathy. 2018 Aug;107(3):189-195. doi: 10.1055/s-0038-1656513. Epub 2018 Jun 5.

PMID:
29871024
3.

On avoided words, absent words, and their application to biological sequence analysis.

Almirantis Y, Charalampopoulos P, Gao J, Iliopoulos CS, Mohamed M, Pissis SP, Polychronopoulos D.

Algorithms Mol Biol. 2017 Mar 14;12:5. doi: 10.1186/s13015-017-0094-z. eCollection 2017.

4.

A novel skew analysis reveals substitution asymmetries linked to genetic code GC-biases and PolIII a-subunit isoforms.

Apostolou-Karampelis K, Nikolaou C, Almirantis Y.

DNA Res. 2016 Aug;23(4):353-63. doi: 10.1093/dnares/dsw021. Epub 2016 Jun 26.

5.

Fractality and entropic scaling in the chromosomal distribution of conserved noncoding elements in the human genome.

Polychronopoulos D, Athanasopoulou L, Almirantis Y.

Gene. 2016 Jun 15;584(2):148-60. doi: 10.1016/j.gene.2016.02.022. Epub 2016 Feb 17.

PMID:
26899868
6.

An overview of the BIOASQ large-scale biomedical semantic indexing and question answering competition.

Tsatsaronis G, Balikas G, Malakasiotis P, Partalas I, Zschunke M, Alvers MR, Weissenborn D, Krithara A, Petridis S, Polychronopoulos D, Almirantis Y, Pavlopoulos J, Baskiotis N, Gallinari P, ArtiƩres T, Ngomo AC, Heino N, Gaussier E, Barrio-Alvers L, Schroeder M, Androutsopoulos I, Paliouras G.

BMC Bioinformatics. 2015 Apr 30;16:138. doi: 10.1186/s12859-015-0564-6.

7.

Orphan and gene related CpG Islands follow power-law-like distributions in several genomes: evidence of function-related and taxonomy-related modes of distribution.

Tsiagkas G, Nikolaou C, Almirantis Y.

Comput Biol Chem. 2014 Dec;53 Pt A:84-96. doi: 10.1016/j.compbiolchem.2014.08.013. Epub 2014 Sep 16.

PMID:
25242375
8.

Editorial: Complexity in genomes.

Almirantis Y, Arndt P, Li W, Provata A.

Comput Biol Chem. 2014 Dec;53 Pt A:1-4. doi: 10.1016/j.compbiolchem.2014.08.003. Epub 2014 Aug 19. No abstract available.

PMID:
25239778
9.

Classification of selectively constrained DNA elements using feature vectors and rule-based classifiers.

Polychronopoulos D, Weitschek E, Dimitrieva S, Bucher P, Felici G, Almirantis Y.

Genomics. 2014 Aug;104(2):79-86. doi: 10.1016/j.ygeno.2014.07.004. Epub 2014 Jul 22.

10.

Conserved noncoding elements follow power-law-like distributions in several genomes as a result of genome dynamics.

Polychronopoulos D, Sellis D, Almirantis Y.

PLoS One. 2014 May 2;9(5):e95437. doi: 10.1371/journal.pone.0095437. eCollection 2014.

11.

Evolutionary constraints favor a biophysical model explaining hox gene collinearity.

Almirantis Y, Provata A, Papageorgiou S.

Curr Genomics. 2013 Jun;14(4):279-88. doi: 10.2174/13892029113149990003.

12.

Homeopathy--between tradition and modern science: remedies as carriers of significance.

Almirantis Y.

Homeopathy. 2013 Apr;102(2):114-22. doi: 10.1016/j.homp.2013.01.003.

PMID:
23622261
13.

Widespread occurrence of power-law distributions in inter-repeat distances shaped by genome dynamics.

Klimopoulos A, Sellis D, Almirantis Y.

Gene. 2012 May 10;499(1):88-98. doi: 10.1016/j.gene.2012.02.005. Epub 2012 Feb 18.

PMID:
22370293
14.

Scaling properties and fractality in the distribution of coding segments in eukaryotic genomes revealed through a block entropy approach.

Athanasopoulou L, Athanasopoulos S, Karamanos K, Almirantis Y.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Nov;82(5 Pt 1):051917. Epub 2010 Nov 11.

PMID:
21230510
15.
16.

Alu and LINE1 distributions in the human chromosomes: evidence of global genomic organization expressed in the form of power laws.

Sellis D, Provata A, Almirantis Y.

Mol Biol Evol. 2007 Nov;24(11):2385-99. Epub 2007 Aug 29.

PMID:
17728280
17.

Deviations from Chargaff's second parity rule in organellar DNA Insights into the evolution of organellar genomes.

Nikolaou C, Almirantis Y.

Gene. 2006 Oct 15;381:34-41. Epub 2006 Jun 28.

PMID:
16893615
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25.

Pattern formation in a Turing's type model with minimal reactional complexity

Almirantis Y.

Comput Chem. 2000 Mar;24(2):159-70.

PMID:
10719635
26.

Modes of morphogen cooperation for limb formation in vertebrates and insects.

Almirantis Y, Papageorgiou S.

J Theor Biol. 1999 Aug 7;199(3):235-42.

PMID:
10433889
29.
30.

Left-right asymmetry in vertebrates.

Almirantis Y.

Bioessays. 1995 Jan;17(1):79-83. Review.

PMID:
7702597
31.

Small angle dislocations of the newt limb axes can test the validity of several regeneration models.

Venieratos D, Almirantis Y, Papageorgiou S.

Growth Dev Aging. 1995 Spring-Summer;59(1-2):45-54.

PMID:
7558538
32.

Autocatalytic action of retinoic acid cannot explain pattern duplications in the chick wing bud.

Papageorgiou S, Almirantis Y.

Prog Clin Biol Res. 1993;383B:725-33. No abstract available.

PMID:
8115387
33.
34.

Morphogenesis in an asymmetric medium.

Almirantis Y, Nicolis G.

Bull Math Biol. 1987;49(5):519-30. No abstract available.

PMID:
3435798

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