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Defining trait-based microbial strategies with consequences for soil carbon cycling under climate change.

Malik AA, Martiny JBH, Brodie EL, Martiny AC, Treseder KK, Allison SD.

ISME J. 2020 Jan;14(1):1-9. doi: 10.1038/s41396-019-0510-0. Epub 2019 Sep 25. Review. No abstract available.


Traits track taxonomy.

Allison SD.

Nat Ecol Evol. 2019 Jul;3(7):1001-1002. doi: 10.1038/s41559-019-0937-8. No abstract available.


Phylogenetic conservation of bacterial responses to soil nitrogen addition across continents.

Isobe K, Allison SD, Khalili B, Martiny AC, Martiny JBH.

Nat Commun. 2019 Jun 7;10(1):2499. doi: 10.1038/s41467-019-10390-y.


Building bottom-up aggregate-based models (ABMs) in soil systems with a view of aggregates as biogeochemical reactors.

Wang B, Brewer PE, Shugart HH, Lerdau MT, Allison SD.

Glob Chang Biol. 2019 Aug;25(8):e6-e8. doi: 10.1111/gcb.14684. Epub 2019 Jun 6. No abstract available.


Drought increases the frequencies of fungal functional genes related to carbon and nitrogen acquisition.

Treseder KK, Berlemont R, Allison SD, Martiny AC.

PLoS One. 2018 Nov 21;13(11):e0206441. doi: 10.1371/journal.pone.0206441. eCollection 2018.


Reduced carbon use efficiency and increased microbial turnover with soil warming.

Li J, Wang G, Mayes MA, Allison SD, Frey SD, Shi Z, Hu XM, Luo Y, Melillo JM.

Glob Chang Biol. 2019 Mar;25(3):900-910. doi: 10.1111/gcb.14517. Epub 2018 Dec 12.


Soil aggregates as biogeochemical reactors and implications for soil-atmosphere exchange of greenhouse gases-A concept.

Wang B, Brewer PE, Shugart HH, Lerdau MT, Allison SD.

Glob Chang Biol. 2019 Feb;25(2):373-385. doi: 10.1111/gcb.14515. Epub 2018 Dec 1.


Decomposition responses to climate depend on microbial community composition.

Glassman SI, Weihe C, Li J, Albright MBN, Looby CI, Martiny AC, Treseder KK, Allison SD, Martiny JBH.

Proc Natl Acad Sci U S A. 2018 Nov 20;115(47):11994-11999. doi: 10.1073/pnas.1811269115. Epub 2018 Nov 5.


Emergence of soil bacterial ecotypes along a climate gradient.

Chase AB, Gomez-Lunar Z, Lopez AE, Li J, Allison SD, Martiny AC, Martiny JBH.

Environ Microbiol. 2018 Nov;20(11):4112-4126. doi: 10.1111/1462-2920.14405. Epub 2018 Oct 5.


Author Correction: Crowther et al. reply.

Crowther TW, Machmuller MB, Carey JC, Allison SD, Blair JM, Bridgham SD, Burton AJ, Dijkstra FA, Elberling B, Estiarte M, Larsen KS, Laudon H, Lupascu M, Marhan S, Mohan J, Niu S, Peñuelas JJ, Schmidt IK, Templer PH, Kröel-Dulay G, Frey S, Bradford MA.

Nature. 2018 Aug;560(7716):E1. doi: 10.1038/s41586-018-0192-1.


Microbial decomposers not constrained by climate history along a Mediterranean climate gradient in southern California.

Baker NR, Khalili B, Martiny JBH, Allison SD.

Ecology. 2018 Jun;99(6):1441-1452. doi: 10.1002/ecy.2345.


Crowther et al. reply.

Crowther TW, Machmuller MB, Carey JC, Allison SD, Blair JM, Bridgham SD, Burton AJ, Dijkstra FA, Elberling B, Estiarte M, Larsen KS, Laudon H, Lupascu M, Marhan S, Mohan J, Niu S, J Peñuelas J, Schmidt IK, Templer PH, Kröel-Dulay G, Frey S, Bradford MA.

Nature. 2018 Feb 21;554(7693):E7-E8. doi: 10.1038/nature25746. No abstract available. Erratum in: Nature. 2018 Jun 6;:.


Temperature sensitivities of extracellular enzyme Vmax and Km across thermal environments.

Allison SD, Romero-Olivares AL, Lu Y, Taylor JW, Treseder KK.

Glob Chang Biol. 2018 Jul;24(7):2884-2897. doi: 10.1111/gcb.14045. Epub 2018 Feb 6.


Decomposition of recalcitrant carbon under experimental warming in boreal forest.

Romero-Olivares AL, Allison SD, Treseder KK.

PLoS One. 2017 Jun 16;12(6):e0179674. doi: 10.1371/journal.pone.0179674. eCollection 2017.


Phylogenetic conservation of substrate use specialization in leaf litter bacteria.

Dolan KL, Peña J, Allison SD, Martiny JB.

PLoS One. 2017 Mar 30;12(3):e0174472. doi: 10.1371/journal.pone.0174472. eCollection 2017.


Quantifying global soil carbon losses in response to warming.

Crowther TW, Todd-Brown KE, Rowe CW, Wieder WR, Carey JC, Machmuller MB, Snoek BL, Fang S, Zhou G, Allison SD, Blair JM, Bridgham SD, Burton AJ, Carrillo Y, Reich PB, Clark JS, Classen AT, Dijkstra FA, Elberling B, Emmett BA, Estiarte M, Frey SD, Guo J, Harte J, Jiang L, Johnson BR, Kröel-Dulay G, Larsen KS, Laudon H, Lavallee JM, Luo Y, Lupascu M, Ma LN, Marhan S, Michelsen A, Mohan J, Niu S, Pendall E, Peñuelas J, Pfeifer-Meister L, Poll C, Reinsch S, Reynolds LL, Schmidt IK, Sistla S, Sokol NW, Templer PH, Treseder KK, Welker JM, Bradford MA.

Nature. 2016 Nov 30;540(7631):104-108. doi: 10.1038/nature20150.


Temperature response of soil respiration largely unaltered with experimental warming.

Carey JC, Tang J, Templer PH, Kroeger KD, Crowther TW, Burton AJ, Dukes JS, Emmett B, Frey SD, Heskel MA, Jiang L, Machmuller MB, Mohan J, Panetta AM, Reich PB, Reinsch S, Wang X, Allison SD, Bamminger C, Bridgham S, Collins SL, de Dato G, Eddy WC, Enquist BJ, Estiarte M, Harte J, Henderson A, Johnson BR, Larsen KS, Luo Y, Marhan S, Melillo JM, Peñuelas J, Pfeifer-Meister L, Poll C, Rastetter E, Reinmann AB, Reynolds LL, Schmidt IK, Shaver GR, Strong AL, Suseela V, Tietema A.

Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):13797-13802. Epub 2016 Nov 14.


Microbial legacies alter decomposition in response to simulated global change.

Martiny JB, Martiny AC, Weihe C, Lu Y, Berlemont R, Brodie EL, Goulden ML, Treseder KK, Allison SD.

ISME J. 2017 Feb;11(2):490-499. doi: 10.1038/ismej.2016.122. Epub 2016 Oct 14.


Radiocarbon constraints imply reduced carbon uptake by soils during the 21st century.

He Y, Trumbore SE, Torn MS, Harden JW, Vaughn LJ, Allison SD, Randerson JT.

Science. 2016 Sep 23;353(6306):1419-1424.


Agroforestry Practices Promote Biodiversity and Natural Resource Diversity in Atlantic Nicaragua.

Sistla SA, Roddy AB, Williams NE, Kramer DB, Stevens K, Allison SD.

PLoS One. 2016 Sep 8;11(9):e0162529. doi: 10.1371/journal.pone.0162529. eCollection 2016.


Effects of dispersal and selection on stochastic assembly in microbial communities.

Evans S, Martiny JB, Allison SD.

ISME J. 2017 Jan;11(1):176-185. doi: 10.1038/ismej.2016.96. Epub 2016 Aug 5.


Quantum Dots Reveal Shifts in Organic Nitrogen Uptake by Fungi Exposed to Long-Term Nitrogen Enrichment.

Hynson NA, Allison SD, Treseder KK.

PLoS One. 2015 Sep 14;10(9):e0138158. doi: 10.1371/journal.pone.0138158. eCollection 2015.


Microbial response to simulated global change is phylogenetically conserved and linked with functional potential.

Amend AS, Martiny AC, Allison SD, Berlemont R, Goulden ML, Lu Y, Treseder KK, Weihe C, Martiny JB.

ISME J. 2016 Jan;10(1):109-18. doi: 10.1038/ismej.2015.96. Epub 2015 Jun 5.


Temporal variation overshadows the response of leaf litter microbial communities to simulated global change.

Matulich KL, Weihe C, Allison SD, Amend AS, Berlemont R, Goulden ML, Kimball S, Martiny AC, Martiny JB.

ISME J. 2015 Nov;9(11):2477-89. doi: 10.1038/ismej.2015.58. Epub 2015 May 15.


Cellulolytic potential under environmental changes in microbial communities from grassland litter.

Berlemont R, Allison SD, Weihe C, Lu Y, Brodie EL, Martiny JB, Martiny AC.

Front Microbiol. 2014 Nov 25;5:639. doi: 10.3389/fmicb.2014.00639. eCollection 2014.


Modeling adaptation of carbon use efficiency in microbial communities.

Allison SD.

Front Microbiol. 2014 Oct 28;5:571. doi: 10.3389/fmicb.2014.00571. eCollection 2014.


Extracellular enzyme production and cheating in Pseudomonas fluorescens depend on diffusion rates.

Allison SD, Lu L, Kent AG, Martiny AC.

Front Microbiol. 2014 Apr 11;5:169. doi: 10.3389/fmicb.2014.00169. eCollection 2014.


Phylogenetic constraints on elemental stoichiometry and resource allocation in heterotrophic marine bacteria.

Zimmerman AE, Allison SD, Martiny AC.

Environ Microbiol. 2014 May;16(5):1398-410. doi: 10.1111/1462-2920.12329. Epub 2013 Dec 3.


Environmental impacts on the diversity of methane-cycling microbes and their resultant function.

Aronson EL, Allison SD, Helliker BR.

Front Microbiol. 2013 Aug 14;4:225. doi: 10.3389/fmicb.2013.00225. eCollection 2013.


Ectomycorrhizal-dominated boreal and tropical forests have distinct fungal communities, but analogous spatial patterns across soil horizons.

McGuire KL, Allison SD, Fierer N, Treseder KK.

PLoS One. 2013 Jul 9;8(7):e68278. doi: 10.1371/journal.pone.0068278. Print 2013.


Microbial abundance and composition influence litter decomposition response to environmental change.

Allison SD, Lu Y, Weihe C, Goulden ML, Martiny AC, Treseder KK, Martiny JB.

Ecology. 2013 Mar;94(3):714-25.


Microdiversity of extracellular enzyme genes among sequenced prokaryotic genomes.

Zimmerman AE, Martiny AC, Allison SD.

ISME J. 2013 Jun;7(6):1187-99. doi: 10.1038/ismej.2012.176. Epub 2013 Jan 10.


Fundamentals of microbial community resistance and resilience.

Shade A, Peter H, Allison SD, Baho DL, Berga M, Bürgmann H, Huber DH, Langenheder S, Lennon JT, Martiny JB, Matulich KL, Schmidt TM, Handelsman J.

Front Microbiol. 2012 Dec 19;3:417. doi: 10.3389/fmicb.2012.00417. eCollection 2012.


Cooperation, competition, and coalitions in enzyme-producing microbes: social evolution and nutrient depolymerization rates.

Folse HJ 3rd, Allison SD.

Front Microbiol. 2012 Sep 27;3:338. doi: 10.3389/fmicb.2012.00338. eCollection 2012.


Fine-scale temporal variation in marine extracellular enzymes of coastal southern california.

Allison SD, Chao Y, Farrara JD, Hatosy S, Martiny AC.

Front Microbiol. 2012 Aug 17;3:301. doi: 10.3389/fmicb.2012.00301. eCollection 2012.


Meta-analysis of environmental impacts on nitrous oxide release in response to N amendment.

Aronson EL, Allison SD.

Front Microbiol. 2012 Jul 31;3:272. doi: 10.3389/fmicb.2012.00272. eCollection 2012.


A trait-based approach for modelling microbial litter decomposition.

Allison SD.

Ecol Lett. 2012 Sep;15(9):1058-70. doi: 10.1111/j.1461-0248.2012.01807.x. Epub 2012 May 30.


Substrate concentration and enzyme allocation can affect rates of microbial decomposition.

German DP, Chacon SS, Allison SD.

Ecology. 2011 Jul;92(7):1471-80.


Drivers of bacterial beta-diversity depend on spatial scale.

Martiny JB, Eisen JA, Penn K, Allison SD, Horner-Devine MC.

Proc Natl Acad Sci U S A. 2011 May 10;108(19):7850-4. doi: 10.1073/pnas.1016308108. Epub 2011 Apr 25.


Functional diversity in resource use by fungi.

McGuire KL, Bent E, Borneman J, Majumder A, Allison SD, Tresederi KK.

Ecology. 2010 Aug;91(8):2324-32.


Stoichiometry of soil enzyme activity at global scale.

Sinsabaugh RL, Lauber CL, Weintraub MN, Ahmed B, Allison SD, Crenshaw C, Contosta AR, Cusack D, Frey S, Gallo ME, Gartner TB, Hobbie SE, Holland K, Keeler BL, Powers JS, Stursova M, Takacs-Vesbach C, Waldrop MP, Wallenstein MD, Zak DR, Zeglin LH.

Ecol Lett. 2008 Nov;11(11):1252-1264. doi: 10.1111/j.1461-0248.2008.01245.x. Epub 2008 Sep 25.


Colloquium paper: resistance, resilience, and redundancy in microbial communities.

Allison SD, Martiny JB.

Proc Natl Acad Sci U S A. 2008 Aug 12;105 Suppl 1:11512-9. doi: 10.1073/pnas.0801925105. Epub 2008 Aug 11.


Plant species traits are the predominant control on litter decomposition rates within biomes worldwide.

Cornwell WK, Cornelissen JH, Amatangelo K, Dorrepaal E, Eviner VT, Godoy O, Hobbie SE, Hoorens B, Kurokawa H, Pérez-Harguindeguy N, Quested HM, Santiago LS, Wardle DA, Wright IJ, Aerts R, Allison SD, van Bodegom P, Brovkin V, Chatain A, Callaghan TV, Díaz S, Garnier E, Gurvich DE, Kazakou E, Klein JA, Read J, Reich PB, Soudzilovskaia NA, Vaieretti MV, Westoby M.

Ecol Lett. 2008 Oct;11(10):1065-71. doi: 10.1111/j.1461-0248.2008.01219.x. Epub 2008 Jul 8.


Analysis of initial burst in PLGA microparticles.

Allison SD.

Expert Opin Drug Deliv. 2008 Jun;5(6):615-28. doi: 10.1517/17425247.5.6.615 . Review.


Liposomal drug delivery.

Allison SD.

J Infus Nurs. 2007 Mar-Apr;30(2):89-95; quiz 120.


Brown ground: a soil carbon analogue for the green world hypothesis?

Allison SD.

Am Nat. 2006 May;167(5):619-27. Epub 2006 Mar 23.


Biochemical responses of chestnut oak to a galling cynipid.

Allison SD, Schultz JC.

J Chem Ecol. 2005 Jan;31(1):151-66.


Rapid nutrient cycling in leaf litter from invasive plants in Hawai'i.

Allison SD, Vitousek PM.

Oecologia. 2004 Dec;141(4):612-9. Epub 2004 Aug 3.


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