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Items: 1 to 50 of 535

1.

Behavioral response to fiber feeding is cohort-dependent and associated with gut microbiota composition in mice.

Mailing LJ, Allen JM, Pence BD, Rytych J, Sun Y, Bhattacharya TK, Park P, Cross TL, McCusker RH, Swanson KS, Fahey GC, Rhodes JS, Kelley KW, Johnson RW, Woods JA.

Behav Brain Res. 2018 Sep 19. pii: S0166-4328(18)31068-4. doi: 10.1016/j.bbr.2018.09.012. [Epub ahead of print]

PMID:
30243767
2.

Impacts Of Inference Method And Dataset Filtering On Phylogenomic Resolution In A Rapid Radiation of Ground Squirrels (Xerinae: Marmotini).

McLean BS, Bell KC, Allen JM, Helgen KM, Cook JA.

Syst Biol. 2018 Sep 18. doi: 10.1093/sysbio/syy064. [Epub ahead of print]

PMID:
30239963
3.

Butyrate and Dietary Soluble Fiber Improve Neuroinflammation Associated With Aging in Mice.

Matt SM, Allen JM, Lawson MA, Mailing LJ, Woods JA, Johnson RW.

Front Immunol. 2018 Aug 14;9:1832. doi: 10.3389/fimmu.2018.01832. eCollection 2018.

4.

Effects of endurance exercise training on inflammatory circulating progenitor cell content in lean and obese adults.

Niemiro GM, Allen JM, Mailing LJ, Khan NA, Holscher HD, Woods JA, De Lisio M.

J Physiol. 2018 Jul;596(14):2811-2822. doi: 10.1113/JP276023. Epub 2018 Jun 19.

PMID:
29923191
5.

aTRAM 2.0: An Improved, Flexible Locus Assembler for NGS Data.

Allen JM, LaFrance R, Folk RA, Johnson KP, Guralnick RP.

Evol Bioinform Online. 2018 May 8;14:1176934318774546. doi: 10.1177/1176934318774546. eCollection 2018. Review.

6.

An enhanced Lactobacillus reuteri biofilm formulation that increases protection against experimental necrotizing enterocolitis.

Olson JK, Navarro JB, Allen JM, McCulloh CJ, Mashburn-Warren L, Wang Y, Varaljay VA, Bailey MT, Goodman SD, Besner GE.

Am J Physiol Gastrointest Liver Physiol. 2018 Sep 1;315(3):G408-G419. doi: 10.1152/ajpgi.00078.2018. Epub 2018 May 31.

PMID:
29848024
7.

Simultaneous radiation of bird and mammal lice following the K-Pg boundary.

Johnson KP, Nguyen NP, Sweet AD, Boyd BM, Warnow T, Allen JM.

Biol Lett. 2018 May;14(5). pii: 20180141. doi: 10.1098/rsbl.2018.0141.

PMID:
29794007
8.

Post-translational regulation of planarian regeneration.

Strand NS, Allen JM, Zayas RM.

Semin Cell Dev Biol. 2018 Apr 30. pii: S1084-9521(17)30196-9. doi: 10.1016/j.semcdb.2018.04.009. [Epub ahead of print] Review.

PMID:
29705300
9.

Measurement of Transverse Wakefields Induced by a Misaligned Positron Bunch in a Hollow Channel Plasma Accelerator.

Lindstrøm CA, Adli E, Allen JM, An W, Beekman C, Clarke CI, Clayton CE, Corde S, Doche A, Frederico J, Gessner SJ, Green SZ, Hogan MJ, Joshi C, Litos M, Lu W, Marsh KA, Mori WB, O'Shea BD, Vafaei-Najafabadi N, Yakimenko V.

Phys Rev Lett. 2018 Mar 23;120(12):124802. doi: 10.1103/PhysRevLett.120.124802.

PMID:
29694092
10.

Global shifts in the phenological synchrony of species interactions over recent decades.

Kharouba HM, Ehrlén J, Gelman A, Bolmgren K, Allen JM, Travers SE, Wolkovich EM.

Proc Natl Acad Sci U S A. 2018 May 15;115(20):5211-5216. doi: 10.1073/pnas.1714511115. Epub 2018 Apr 16.

PMID:
29666247
11.

Worldwide Engagement for Digitizing Biocollections (WeDigBio): The Biocollections Community's Citizen-Science Space on the Calendar.

Ellwood ER, Kimberly P, Guralnick R, Flemons P, Love K, Ellis S, Allen JM, Best JH, Carter R, Chagnoux S, Costello R, Denslow MW, Dunckel BA, Ferriter MM, Gilbert EE, Goforth C, Groom Q, Krimmel ER, LaFrance R, Martinec JL, Miller AN, Minnaert-Grote J, Nash T, Oboyski P, Paul DL, Pearson KD, Pentcheff ND, Roberts MA, Seltzer CE, Soltis PS, Stephens R, Sweeney PW, von Konrat M, Wall A, Wetzer R, Zimmerman C, Mast AR.

Bioscience. 2018 Feb 1;68(2):112-124. doi: 10.1093/biosci/bix143. Epub 2018 Jan 17.

12.

Host and parasite morphology influence congruence between host and parasite phylogenies.

Sweet AD, Bush SE, Gustafsson DR, Allen JM, DiBlasi E, Skeen HR, Weckstein JD, Johnson KP.

Int J Parasitol. 2018 Jul;48(8):641-648. doi: 10.1016/j.ijpara.2018.01.007. Epub 2018 Mar 23.

PMID:
29577890
13.

ACC Appropriate Use Criteria Methodology: 2018 Update: A Report of the American College of Cardiology Appropriate Use Criteria Task Force.

Hendel RC, Lindsay BD, Allen JM, Brindis RG, Patel MR, White L, Winchester DE, Wolk MJ.

J Am Coll Cardiol. 2018 Feb 27;71(8):935-948. doi: 10.1016/j.jacc.2018.01.007. No abstract available.

PMID:
29471942
14.

Dissecting the function of Cullin-RING ubiquitin ligase complex genes in planarian regeneration.

Strand NS, Allen JM, Ghulam M, Taylor MR, Munday RK, Carrillo M, Movsesyan A, Zayas RM.

Dev Biol. 2018 Jan 15;433(2):210-217. doi: 10.1016/j.ydbio.2017.10.011. Epub 2017 Dec 25.

PMID:
29291974
15.

ACC/AATS/AHA/ASE/EACTS/HVS/SCA/SCAI/SCCT/SCMR/STS 2017 Appropriate Use Criteria for the Treatment of Patients With Severe Aortic Stenosis: A Report of the American College of Cardiology Appropriate Use Criteria Task Force, American Association for Thoracic Surgery, American Heart Association, American Society of Echocardiography, European Association for Cardio-Thoracic Surgery, Heart Valve Society, Society of Cardiovascular Anesthesiologists, Society for Cardiovascular Angiography and Interventions, Society of Cardiovascular Computed Tomography, Society for Cardiovascular Magnetic Resonance, and Society of Thoracic Surgeons.

Aortic Stenosis Writing Group, Bonow RO, Brown AS, Gillam LD, Kapadia SR, Kavinsky CJ, Lindman BR, Mack MJ, Thourani VH; Aortic Stenosis Rating Panel, Dehmer GJ, Bonow RO, Lindman BR, Beaver TM, Bradley SM, Carabello BA, Desai MY, George I, Green P, Holmes DR Jr, Johnston D, Leipsic J, Mick SL, Passeri JJ, Piana RN, Reichek N, Ruiz CE, Taub CC, Thomas JD, Turi ZG; Appropriate Use Criteria Task Force, Doherty JU, Dehmer GJ, Bailey SR, Bhave NM, Brown AS, Daugherty SL, Dean LS, Desai MY, Duvernoy CS, Gillam LD, Hendel RC, Kramer CM, Lindsay BD, Manning WJ, Mehrotra P, Patel MR, Sachdeva R, Wann LS, Winchester DE, Allen JM.

J Am Soc Echocardiogr. 2018 Feb;31(2):117-147. doi: 10.1016/j.echo.2017.10.020. Epub 2017 Dec 16.

PMID:
29254695
16.

The effects of model composition design choices on high-fidelity simulations of motoneuron recruitment and firing behaviors.

Allen JM, Elbasiouny SM.

J Neural Eng. 2018 Jun;15(3):036024. doi: 10.1088/1741-2552/aa9db5. Epub 2017 Nov 28.

PMID:
29182156
17.

Exercise Alters Gut Microbiota Composition and Function in Lean and Obese Humans.

Allen JM, Mailing LJ, Niemiro GM, Moore R, Cook MD, White BA, Holscher HD, Woods JA.

Med Sci Sports Exerc. 2018 Apr;50(4):747-757. doi: 10.1249/MSS.0000000000001495.

PMID:
29166320
18.

Integrating phylogenomic and population genomic patterns in avian lice provides a more complete picture of parasite evolution.

Sweet AD, Boyd BM, Allen JM, Villa SM, Valim MP, Rivera-Parra JL, Wilson RE, Johnson KP.

Evolution. 2018 Jan;72(1):95-112. doi: 10.1111/evo.13386. Epub 2017 Nov 24.

PMID:
29094340
19.

Acceleration of a trailing positron bunch in a plasma wakefield accelerator.

Doche A, Beekman C, Corde S, Allen JM, Clarke CI, Frederico J, Gessner SJ, Green SZ, Hogan MJ, O'Shea B, Yakimenko V, An W, Clayton CE, Joshi C, Marsh KA, Mori WB, Vafaei-Najafabadi N, Litos MD, Adli E, Lindstrøm CA, Lu W.

Sci Rep. 2017 Oct 27;7(1):14180. doi: 10.1038/s41598-017-14524-4.

20.

AAV6 Vector Production and Purification for Muscle Gene Therapy.

Halbert CL, Allen JM, Chamberlain JS.

Methods Mol Biol. 2018;1687:257-266. doi: 10.1007/978-1-4939-7374-3_18.

PMID:
29067669
21.

ACC/AATS/AHA/ASE/ASNC/HRS/SCAI/SCCT/SCMR/STS 2017 Appropriate Use Criteria for Multimodality Imaging in Valvular Heart Disease: A Report of the American College of Cardiology Appropriate Use Criteria Task Force, American Association for Thoracic Surgery, American Heart Association, American Society of Echocardiography, American Society of Nuclear Cardiology, Heart Rhythm Society, Society for Cardiovascular Angiography and Interventions, Society of Cardiovascular Computed Tomography, Society for Cardiovascular Magnetic Resonance, and Society of Thoracic Surgeons.

Doherty JU, Kort S, Mehran R, Schoenhagen P, Soman P, Dehmer GJ, Doherty JU, Schoenhagen P, Amin Z, Bashore TM, Boyle A, Calnon DA, Carabello B, Cerqueira MD, Conte J, Desai M, Edmundowicz D, Ferrari VA, Ghoshhajra B, Mehrotra P, Nazarian S, Reece TB, Tamarappoo B, Tzou WS, Wong JB, Doherty JU, Dehmer GJ, Bailey SR, Bhave NM, Brown AS, Daugherty SL, Dean LS, Desai MY, Duvernoy CS, Gillam LD, Hendel RC, Kramer CM, Lindsay BD, Manning WJ, Mehrotra P, Patel MR, Sachdeva R, Wann LS, Winchester DE, Wolk MJ, Allen JM.

J Am Soc Echocardiogr. 2018 Apr;31(4):381-404. doi: 10.1016/j.echo.2017.08.012. Epub 2017 Oct 20.

PMID:
29066081
22.

Exercise training-induced modification of the gut microbiota persists after microbiota colonization and attenuates the response to chemically-induced colitis in gnotobiotic mice.

Allen JM, Mailing LJ, Cohrs J, Salmonson C, Fryer JD, Nehra V, Hale VL, Kashyap P, White BA, Woods JA.

Gut Microbes. 2018 Mar 4;9(2):115-130. doi: 10.1080/19490976.2017.1372077. Epub 2017 Sep 22.

23.

Long-term supplementation with EGCG and beta-alanine decreases mortality but does not affect cognitive or muscle function in aged mice.

Pence BD, Bhattacharya TK, Park P, Rytych JL, Allen JM, Sun Y, McCusker RH, Kelley KW, Johnson RW, Rhodes JS, Woods JA.

Exp Gerontol. 2017 Nov;98:22-29. doi: 10.1016/j.exger.2017.08.020. Epub 2017 Aug 14.

PMID:
28818411
24.

Showering in Flint, MI: Is there a DBP problem?

Allen JM, Cuthbertson AA, Liberatore HK, Kimura SY, Mantha A, Edwards MA, Richardson SD.

J Environ Sci (China). 2017 Aug;58:271-284. doi: 10.1016/j.jes.2017.06.009. Epub 2017 Jun 22.

PMID:
28774618
25.

Synthesis of less toxic gold nanorods by using dodecylethyldimethylammonium bromide as an alternative growth-directing surfactant.

Allen JM, Xu J, Blahove M, Canonico-May SA, Santaloci TJ, Braselton ME, Stone JW.

J Colloid Interface Sci. 2017 Nov 1;505:1172-1176. doi: 10.1016/j.jcis.2017.06.101. Epub 2017 Jul 1.

PMID:
28715861
26.

Assessing the effectiveness of a 3-month day-and-night home closed-loop control combined with pump suspend feature compared with sensor-augmented pump therapy in youths and adults with suboptimally controlled type 1 diabetes: a randomised parallel study protocol.

Bally L, Thabit H, Tauschmann M, Allen JM, Hartnell S, Wilinska ME, Exall J, Huegel V, Sibayan J, Borgman S, Cheng P, Blackburn M, Lawton J, Elleri D, Leelarathna L, Acerini CL, Campbell F, Shah VN, Criego A, Evans ML, Dunger DB, Kollman C, Bergenstal RM, Hovorka R.

BMJ Open. 2017 Jul 13;7(7):e016738. doi: 10.1136/bmjopen-2017-016738.

27.

Primates, Lice and Bacteria: Speciation and Genome Evolution in the Symbionts of Hominid Lice.

Boyd BM, Allen JM, Nguyen NP, Vachaspati P, Quicksall ZS, Warnow T, Mugisha L, Johnson KP, Reed DL.

Mol Biol Evol. 2017 Jul 1;34(7):1743-1757. doi: 10.1093/molbev/msx117.

28.

Climate change both facilitates and inhibits invasive plant ranges in New England.

Merow C, Bois ST, Allen JM, Xie Y, Silander JA Jr.

Proc Natl Acad Sci U S A. 2017 Apr 18;114(16):E3276-E3284. doi: 10.1073/pnas.1609633114. Epub 2017 Mar 27.

29.

Dose-dependent decrease in mortality with no cognitive or muscle function improvements due to dietary EGCG supplementation in aged mice.

Pence BD, Bhattacharya TK, Park P, Rytych JL, Allen JM, Sun Y, McCusker RH, Kelley KW, Johnson RW, Rhodes JS, Woods JA.

Appl Physiol Nutr Metab. 2017 May;42(5):495-502. doi: 10.1139/apnm-2016-0530. Epub 2017 Jan 5.

PMID:
28177724
30.

Phylogenomics from Whole Genome Sequences Using aTRAM.

Allen JM, Boyd B, Nguyen NP, Vachaspati P, Warnow T, Huang DI, Grady PGS, Bell KC, Cronk QCB, Mugisha L, Pittendrigh BR, Leonardi MS, Reed DL, Johnson KP.

Syst Biol. 2017 Sep 1;66(5):786-798. doi: 10.1093/sysbio/syw105.

PMID:
28123117
31.

Phylogenomics using Target-Restricted Assembly Resolves Intrageneric Relationships of Parasitic Lice (Phthiraptera: Columbicola).

Boyd BM, Allen JM, Nguyen NP, Sweet AD, Warnow T, Shapiro MD, Villa SM, Bush SE, Clayton DH, Johnson KP.

Syst Biol. 2017 Nov 1;66(6):896-911. doi: 10.1093/sysbio/syx027.

PMID:
28108601
32.

Identification of NTRK fusions in pediatric mesenchymal tumors.

Pavlick D, Schrock AB, Malicki D, Stephens PJ, Kuo DJ, Ahn H, Turpin B, Allen JM, Rosenzweig M, Badizadegan K, Ross JS, Miller VA, Wong V, Ali SM.

Pediatr Blood Cancer. 2017 Aug;64(8). doi: 10.1002/pbc.26433. Epub 2017 Jan 18.

PMID:
28097808
33.

Day-and-night glycaemic control with closed-loop insulin delivery versus conventional insulin pump therapy in free-living adults with well controlled type 1 diabetes: an open-label, randomised, crossover study.

Bally L, Thabit H, Kojzar H, Mader JK, Qerimi-Hyseni J, Hartnell S, Tauschmann M, Allen JM, Wilinska ME, Pieber TR, Evans ML, Hovorka R.

Lancet Diabetes Endocrinol. 2017 Apr;5(4):261-270. doi: 10.1016/S2213-8587(17)30001-3. Epub 2017 Jan 14.

34.

Genomic Profiling of Circulating Tumor DNA in Relapsed EGFR-mutated Lung Adenocarcinoma Reveals an Acquired FGFR3-TACC3 Fusion.

Allen JM, Schrock AB, Erlich RL, Miller VA, Stephens PJ, Ross JS, Ou SI, Ali SM, Vafai D.

Clin Lung Cancer. 2017 May;18(3):e219-e222. doi: 10.1016/j.cllc.2016.12.006. Epub 2016 Dec 22. No abstract available.

35.

Sensor Life and Overnight Closed Loop: A Randomized Clinical Trial.

Tauschmann M, Allen JM, Wilinska ME, Ruan Y, Thabit H, Acerini CL, Dunger DB, Hovorka R.

J Diabetes Sci Technol. 2017 May;11(3):513-521. doi: 10.1177/1932296816678631. Epub 2016 Nov 11.

36.

Closed-loop insulin delivery in inpatients with type 2 diabetes: a randomised, parallel-group trial.

Thabit H, Hartnell S, Allen JM, Lake A, Wilinska ME, Ruan Y, Evans ML, Coll AP, Hovorka R.

Lancet Diabetes Endocrinol. 2017 Feb;5(2):117-124. doi: 10.1016/S2213-8587(16)30280-7. Epub 2016 Nov 9.

37.

Environmental DNA from Residual Saliva for Efficient Noninvasive Genetic Monitoring of Brown Bears (Ursus arctos).

Wheat RE, Allen JM, Miller SD, Wilmers CC, Levi T.

PLoS One. 2016 Nov 9;11(11):e0165259. doi: 10.1371/journal.pone.0165259. eCollection 2016.

38.

Sleep and Pain in Pediatric Illness: A Conceptual Review.

Allen JM, Graef DM, Ehrentraut JH, Tynes BL, Crabtree VM.

CNS Neurosci Ther. 2016 Nov;22(11):880-893. doi: 10.1111/cns.12583. Epub 2016 Jul 15. Review.

PMID:
27421251
39.

Home Use of Day-and-Night Hybrid Closed-Loop Insulin Delivery in Suboptimally Controlled Adolescents With Type 1 Diabetes: A 3-Week, Free-Living, Randomized Crossover Trial.

Tauschmann M, Allen JM, Wilinska ME, Thabit H, Acerini CL, Dunger DB, Hovorka R.

Diabetes Care. 2016 Nov;39(11):2019-2025. Epub 2016 Sep 9.

40.

Effects of 16S rDNA sampling on estimates of the number of endosymbiont lineages in sucking lice.

Allen JM, Burleigh JG, Light JE, Reed DL.

PeerJ. 2016 Jul 19;4:e2187. doi: 10.7717/peerj.2187. eCollection 2016.

41.

Gut Microbiota: Modulation of Host Physiology in Obesity.

Nehra V, Allen JM, Mailing LJ, Kashyap PC, Woods JA.

Physiology (Bethesda). 2016 Sep;31(5):327-35. doi: 10.1152/physiol.00005.2016. Review.

42.

High-field plasma acceleration in a high-ionization-potential gas.

Corde S, Adli E, Allen JM, An W, Clarke CI, Clausse B, Clayton CE, Delahaye JP, Frederico J, Gessner S, Green SZ, Hogan MJ, Joshi C, Litos M, Lu W, Marsh KA, Mori WB, Vafaei-Najafabadi N, Walz D, Yakimenko V.

Nat Commun. 2016 Jun 17;7:11898. doi: 10.1038/ncomms11898.

43.

Identification of a Fluorescent Protein from Rhacostoma Atlantica.

Tota MR, Allen JM, Karolin JO, Geddes CD, Ward WW.

Photochem Photobiol. 2016 Sep;92(5):667-77. doi: 10.1111/php.12609. Epub 2016 Sep 9.

PMID:
27288884
44.

Demonstration of a positron beam-driven hollow channel plasma wakefield accelerator.

Gessner S, Adli E, Allen JM, An W, Clarke CI, Clayton CE, Corde S, Delahaye JP, Frederico J, Green SZ, Hast C, Hogan MJ, Joshi C, Lindstrøm CA, Lipkowitz N, Litos M, Lu W, Marsh KA, Mori WB, O'Shea B, Vafaei-Najafabadi N, Walz D, Yakimenko V, Yocky G.

Nat Commun. 2016 Jun 2;7:11785. doi: 10.1038/ncomms11785.

45.

Two Bacterial Genera, Sodalis and Rickettsia, Associated with the Seal Louse Proechinophthirus fluctus (Phthiraptera: Anoplura).

Boyd BM, Allen JM, Koga R, Fukatsu T, Sweet AD, Johnson KP, Reed DL.

Appl Environ Microbiol. 2016 May 16;82(11):3185-97. doi: 10.1128/AEM.00282-16. Print 2016 Jun 1.

46.
47.

Day-and-Night Hybrid Closed-Loop Insulin Delivery in Adolescents With Type 1 Diabetes: A Free-Living, Randomized Clinical Trial.

Tauschmann M, Allen JM, Wilinska ME, Thabit H, Stewart Z, Cheng P, Kollman C, Acerini CL, Dunger DB, Hovorka R.

Diabetes Care. 2016 Jul;39(7):1168-74. doi: 10.2337/dc15-2078. Epub 2016 Jan 6.

48.

Exercise and gut immune function: evidence of alterations in colon immune cell homeostasis and microbiome characteristics with exercise training.

Cook MD, Allen JM, Pence BD, Wallig MA, Gaskins HR, White BA, Woods JA.

Immunol Cell Biol. 2016 Feb;94(2):158-63. doi: 10.1038/icb.2015.108. Epub 2015 Dec 2. Review.

PMID:
26626721
49.

From Bench to Bedside: A communal utility value intervention to enhance students' biomedical science motivation.

Brown ER, Smith JL, Thoman DB, Allen JM, Muragishi G.

J Educ Psychol. 2015 Nov 1;107(4):1116-1135. Epub 2015 Apr 20.

50.

Moderately Fermentable Potato Fiber Attenuates Signs and Inflammation Associated with Experimental Colitis in Mice.

Panasevich MR, Allen JM, Wallig MA, Woods JA, Dilger RN.

J Nutr. 2015 Dec;145(12):2781-8. doi: 10.3945/jn.115.218578. Epub 2015 Oct 21.

PMID:
26491118

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