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Identifying Clinical and Research Priorities in Sickle Cell Lung Disease. An Official American Thoracic Society Workshop Report.

Ruhl AP, Sadreameli SC, Allen JL, Bennett DP, Campbell AD, Coates TD, Diallo DA, Field JJ, Fiorino EK, Gladwin MT, Glassberg JA, Gordeuk VR, Graham LM, Greenough A, Howard J, Kato GJ, Knight-Madden J, Kopp BT, Koumbourlis AC, Lanzkron SM, Liem RI, Machado RF, Mehari A, Morris CR, Ogunlesi FO, Rosen CL, Smith-Whitley K, Tauber D, Terry N, Thein SL, Vichinsky E, Weir NA, Cohen RT, Klings ES.

Ann Am Thorac Soc. 2019 Sep;16(9):e17-e32. doi: 10.1513/AnnalsATS.201906-433ST.


Traditional Salmonella Typhimurium typing tools (phage typing and MLVA) are sufficient to resolve well-defined outbreak events only.

Crabb HK, Allen JL, Devlin JM, Firestone SM, Stevenson M, Wilks CR, Gilkerson JR.

Food Microbiol. 2019 Dec;84:103237. doi: 10.1016/ Epub 2019 Jun 5.


Somatic evolution and global expansion of an ancient transmissible cancer lineage.

Baez-Ortega A, Gori K, Strakova A, Allen JL, Allum KM, Bansse-Issa L, Bhutia TN, Bisson JL, Briceño C, Castillo Domracheva A, Corrigan AM, Cran HR, Crawford JT, Davis E, de Castro KF, B de Nardi A, de Vos AP, Delgadillo Keenan L, Donelan EM, Espinoza Huerta AR, Faramade IA, Fazil M, Fotopoulou E, Fruean SN, Gallardo-Arrieta F, Glebova O, Gouletsou PG, Häfelin Manrique RF, Henriques JJGP, Horta RS, Ignatenko N, Kane Y, King C, Koenig D, Krupa A, Kruzeniski SJ, Kwon YM, Lanza-Perea M, Lazyan M, Lopez Quintana AM, Losfelt T, Marino G, Martínez Castañeda S, Martínez-López MF, Meyer M, Migneco EJ, Nakanwagi B, Neal KB, Neunzig W, Ní Leathlobhair M, Nixon SJ, Ortega-Pacheco A, Pedraza-Ordoñez F, Peleteiro MC, Polak K, Pye RJ, Reece JF, Rojas Gutierrez J, Sadia H, Schmeling SK, Shamanova O, Sherlock AG, Stammnitz M, Steenland-Smit AE, Svitich A, Tapia Martínez LJ, Thoya Ngoka I, Torres CG, Tudor EM, van der Wel MG, Viţălaru BA, Vural SA, Walkinton O, Wang J, Wehrle-Martinez AS, Widdowson SAE, Stratton MR, Alexandrov LB, Martincorena I, Murchison EP.

Science. 2019 Aug 2;365(6452). pii: eaau9923. doi: 10.1126/science.aau9923.


Serological responses of Australian horses using a commercial duplex indirect ELISA following vaccination against strangles.

El-Hage CM, Bannai H, Wiethoelter AK, Firestone SM, Heislers CM, Allen JL, Waller AS, Gilkerson JR.

Aust Vet J. 2019 Jul;97(7):220-224. doi: 10.1111/avj.12825.


Machine-learning to stratify diabetic patients using novel cardiac biomarkers and integrative genomics.

Hathaway QA, Roth SM, Pinti MV, Sprando DC, Kunovac A, Durr AJ, Cook CC, Fink GK, Cheuvront TB, Grossman JH, Aljahli GA, Taylor AD, Giromini AP, Allen JL, Hollander JM.

Cardiovasc Diabetol. 2019 Jun 11;18(1):78. doi: 10.1186/s12933-019-0879-0.


Private vs public child welfare systems: A comparative analysis of national safety outcome performance.

Huggins-Hoyt KY, Mowbray O, Briggs HE, Allen JL.

Child Abuse Negl. 2019 Aug;94:104024. doi: 10.1016/j.chiabu.2019.104024. Epub 2019 May 31.


Adaptation of the group A Streptococcus adhesin Scl1 to bind fibronectin type III repeats within wound-associated extracellular matrix: implications for cancer therapy.

McNitt DH, Choi SJ, Allen JL, Hames RA, Weed SA, Van De Water L, Berisio R, Lukomski S.

Mol Microbiol. 2019 Sep;112(3):800-819. doi: 10.1111/mmi.14317. Epub 2019 Jun 12.


Motor module generalization across balance and walking is impaired after stroke.

Allen JL, Kesar TM, Ting LH.

J Neurophysiol. 2019 Jul 1;122(1):277-289. doi: 10.1152/jn.00561.2018. Epub 2019 May 8.


Spatial Distribution of Salmonella enterica in Poultry Shed Environments Observed by Intensive Longitudinal Environmental Sampling.

Crabb HK, Allen JL, Devlin JM, Wilks CR, Gilkerson JR.

Appl Environ Microbiol. 2019 Jul 1;85(14). pii: e00333-19. doi: 10.1128/AEM.00333-19. Print 2019 Jul 15.


Pain-Reducing Effects of Physical Therapist-Delivered Interventions: A Systematic Review of Randomized Trials Among Older Adults With Dementia.

Coronado RA, Albers HE, Allen JL, Clarke RG, Estrada VA, Simon CB, Galloway RV, Fisher SR.

J Geriatr Phys Ther. 2019 Apr 15. doi: 10.1519/JPT.0000000000000235. [Epub ahead of print]


Callous-Unemotional Traits and Academic Performance in Secondary School Students: Examining the Moderating Effect of Gender.

Bird E, Chhoa CY, Midouhas E, Allen JL.

J Abnorm Child Psychol. 2019 Oct;47(10):1639-1650. doi: 10.1007/s10802-019-00545-2.


Zinc intoxication induces ferroptosis in A549 human lung cells.

Palmer LD, Jordan AT, Maloney KN, Farrow MA, Gutierrez DB, Gant-Branum R, Burns WJ, Romer CE, Tsui T, Allen JL, Beavers WN, Nei YW, Sherrod SD, Lacy DB, Norris JL, McLean JA, Caprioli RM, Skaar EP.

Metallomics. 2019 May 22;11(5):982-993. doi: 10.1039/c8mt00360b.


Lung-Specific Extracellular Superoxide Dismutase Improves Cognition of Adult Mice Exposed to Neonatal Hyperoxia.

Buczynski BW, Mai N, Yee M, Allen JL, Prifti L, Cory-Slechta DA, Halterman MW, O'Reilly MA.

Front Med (Lausanne). 2018 Dec 10;5:334. doi: 10.3389/fmed.2018.00334. eCollection 2018.


Gait Rehabilitation Using Functional Electrical Stimulation Induces Changes in Ankle Muscle Coordination in Stroke Survivors: A Preliminary Study.

Allen JL, Ting LH, Kesar TM.

Front Neurol. 2018 Dec 20;9:1127. doi: 10.3389/fneur.2018.01127. eCollection 2018.


Cortactin Phosphorylation by Casein Kinase 2 Regulates Actin-Related Protein 2/3 Complex Activity, Invadopodia Function, and Tumor Cell Invasion.

Markwell SM, Ammer AG, Interval ET, Allen JL, Papenberg BW, Hames RA, Castaño JE, Schafer DA, Weed SA.

Mol Cancer Res. 2019 Apr;17(4):987-1001. doi: 10.1158/1541-7786.MCR-18-0391. Epub 2019 Jan 4.


Enhanced cerebellar myelination with concomitant iron elevation and ultrastructural irregularities following prenatal exposure to ambient particulate matter in the mouse.

Klocke C, Sherina V, Graham UM, Gunderson J, Allen JL, Sobolewski M, Blum JL, Zelikoff JT, Cory-Slechta DA.

Inhal Toxicol. 2018 Aug;30(9-10):381-396. doi: 10.1080/08958378.2018.1533053. Epub 2018 Dec 20.


PRE-surgical Metformin In Uterine Malignancy (PREMIUM): a Multi-Center, Randomized Double-Blind, Placebo-Controlled Phase III Trial.

Kitson SJ, Maskell Z, Sivalingam VN, Allen JL, Ali S, Burns S, Gilmour K, Latheef R, Slade RJ, Pemberton PW, Shaw J, Ryder WD, Kitchener HC, Crosbie EJ.

Clin Cancer Res. 2019 Apr 15;25(8):2424-2432. doi: 10.1158/1078-0432.CCR-18-3339. Epub 2018 Dec 18.


First genome-wide analysis of the endangered, endemic lichen Cetradonia linearis reveals isolation by distance and strong population structure.

Allen JL, McKenzie SK, Sleith RS, Alter SE.

Am J Bot. 2018 Sep;105(9):1556-1567. doi: 10.1002/ajb2.1150. Epub 2018 Aug 29.


Developmental exposures to ultrafine particle air pollution reduces early testosterone levels and adult male social novelty preference: Risk for children's sex-biased neurobehavioral disorders.

Sobolewski M, Anderson T, Conrad K, Marvin E, Klocke C, Morris-Schaffer K, Allen JL, Cory-Slechta DA.

Neurotoxicology. 2018 Sep;68:203-211. doi: 10.1016/j.neuro.2018.08.009. Epub 2018 Aug 23.


The motor repertoire of older adult fallers may constrain their response to balance perturbations.

Allen JL, Franz JR.

J Neurophysiol. 2018 Nov 1;120(5):2368-2378. doi: 10.1152/jn.00302.2018. Epub 2018 Aug 22.


An Integrated, High-Throughput Strategy for Multiomic Systems Level Analysis.

Gutierrez DB, Gant-Branum RL, Romer CE, Farrow MA, Allen JL, Dahal N, Nei YW, Codreanu SG, Jordan AT, Palmer LD, Sherrod SD, McLean JA, Skaar EP, Norris JL, Caprioli RM.

J Proteome Res. 2018 Oct 5;17(10):3396-3408. doi: 10.1021/acs.jproteome.8b00302. Epub 2018 Aug 30.


Vesicle trafficking pathways that direct cell migration in 3D matrices and in vivo.

Wilson BJ, Allen JL, Caswell PT.

Traffic. 2018 Dec;19(12):899-909. doi: 10.1111/tra.12605. Epub 2018 Sep 10. Review.


Salmonella spp. transmission in a vertically integrated poultry operation: Clustering and diversity analysis using phenotyping (serotyping, phage typing) and genotyping (MLVA).

Crabb HK, Allen JL, Devlin JM, Firestone SM, Wilks CR, Gilkerson JR.

PLoS One. 2018 Jul 19;13(7):e0201031. doi: 10.1371/journal.pone.0201031. eCollection 2018.


Effect of neonatal hyperoxia followed by concentrated ambient ultrafine particle exposure on cumulative learning in C57Bl/6J mice.

Morris-Schaffer K, Sobolewski M, Allen JL, Marvin E, Yee M, Arora M, O'Reilly MA, Cory-Slechta DA.

Neurotoxicology. 2018 Jul;67:234-244. doi: 10.1016/j.neuro.2018.06.006. Epub 2018 Jun 18.


First detection of bovine noroviruses and detection of bovine coronavirus in Australian dairy cattle.

Symes SJ, Allen JL, Mansell PD, Woodward KL, Bailey KE, Gilkerson JR, Browning GF.

Aust Vet J. 2018 Jun;96(6):203-208. doi: 10.1111/avj.12695.


The use of social network analysis to examine the transmission of Salmonella spp. within a vertically integrated broiler enterprise.

Crabb HK, Allen JL, Devlin JM, Firestone SM, Stevenson MA, Gilkerson JR.

Food Microbiol. 2018 May;71:73-81. doi: 10.1016/ Epub 2017 Mar 10.


Endocrine active metals, prenatal stress and enhanced neurobehavioral disruption.

Sobolewski M, Conrad K, Marvin E, Allen JL, Cory-Slechta DA.

Horm Behav. 2018 May;101:36-49. doi: 10.1016/j.yhbeh.2018.01.004. Epub 2018 Feb 1.


A Systematic Review of Risk and Protective Factors for Externalizing Problems in Children Exposed to Intimate Partner Violence.

Fong VC, Hawes D, Allen JL.

Trauma Violence Abuse. 2019 Apr;20(2):149-167. doi: 10.1177/1524838017692383. Epub 2017 Feb 9.


Developmental exposure to low level ambient ultrafine particle air pollution and cognitive dysfunction.

Cory-Slechta DA, Allen JL, Conrad K, Marvin E, Sobolewski M.

Neurotoxicology. 2018 Dec;69:217-231. doi: 10.1016/j.neuro.2017.12.003. Epub 2017 Dec 13.


Exposure to fine and ultrafine particulate matter during gestation alters postnatal oligodendrocyte maturation, proliferation capacity, and myelination.

Klocke C, Allen JL, Sobolewski M, Blum JL, Zelikoff JT, Cory-Slechta DA.

Neurotoxicology. 2018 Mar;65:196-206. doi: 10.1016/j.neuro.2017.10.004. Epub 2017 Oct 24.


Regulation of Fatty Acid Production and Release in Benthic Algae: Could Parallel Allelopathy Be Explained with Plant Defence Theories?

Allen JL, Ten-Hage L, Leflaive J.

Microb Ecol. 2018 Apr;75(3):609-621. doi: 10.1007/s00248-017-1082-z. Epub 2017 Oct 6.


The Translational Science Benefits Model: A New Framework for Assessing the Health and Societal Benefits of Clinical and Translational Sciences.

Luke DA, Sarli CC, Suiter AM, Carothers BJ, Combs TB, Allen JL, Beers CE, Evanoff BA.

Clin Transl Sci. 2018 Jan;11(1):77-84. doi: 10.1111/cts.12495. Epub 2017 Sep 8.


Procedural povidone iodine rectal preparation reduces bacteriuria and bacteremia following prostate needle biopsy.

Allen JL, Lehman K, Dewan K, Kirimanjeswara G, Raman JD.

Can J Urol. 2017 Aug;24(4):8883-8889.


Parent-dependent stressors and the onset of anxiety disorders in children: links with parental psychopathology.

Allen JL, Sandberg S, Chhoa CY, Fearn T, Rapee RM.

Eur Child Adolesc Psychiatry. 2018 Feb;27(2):221-231. doi: 10.1007/s00787-017-1038-3. Epub 2017 Aug 8.


Nanoporous Immunoprotective Device for Stem-Cell-Derived β-Cell Replacement Therapy.

Chang R, Faleo G, Russ HA, Parent AV, Elledge SK, Bernards DA, Allen JL, Villanueva K, Hebrok M, Tang Q, Desai TA.

ACS Nano. 2017 Aug 22;11(8):7747-7757. doi: 10.1021/acsnano.7b01239. Epub 2017 Aug 7.


Cognitive Effects of Air Pollution Exposures and Potential Mechanistic Underpinnings.

Allen JL, Klocke C, Morris-Schaffer K, Conrad K, Sobolewski M, Cory-Slechta DA.

Curr Environ Health Rep. 2017 Jun;4(2):180-191. doi: 10.1007/s40572-017-0134-3. Review.


The Character of Published Scholarship by Top Ranked African American Faculty in U.S. Social Work Programs.

Allen JL.

J Evid Inf Soc Work. 2017 May-Jun;14(3):158-171. doi: 10.1080/23761407.2017.1303415. Epub 2017 Apr 7.


Increased neuromuscular consistency in gait and balance after partnered, dance-based rehabilitation in Parkinson's disease.

Allen JL, McKay JL, Sawers A, Hackney ME, Ting LH.

J Neurophysiol. 2017 Jul 1;118(1):363-373. doi: 10.1152/jn.00813.2016. Epub 2017 Apr 5.


Contribution of muscle short-range stiffness to initial changes in joint kinetics and kinematics during perturbations to standing balance: A simulation study.

De Groote F, Allen JL, Ting LH.

J Biomech. 2017 Apr 11;55:71-77. doi: 10.1016/j.jbiomech.2017.02.008. Epub 2017 Feb 21.


Integrated, High-Throughput, Multiomics Platform Enables Data-Driven Construction of Cellular Responses and Reveals Global Drug Mechanisms of Action.

Norris JL, Farrow MA, Gutierrez DB, Palmer LD, Muszynski N, Sherrod SD, Pino JC, Allen JL, Spraggins JM, Lubbock AL, Jordan A, Burns W, Poland JC, Romer C, Manier ML, Nei YW, Prentice BM, Rose KL, Hill S, Van de Plas R, Tsui T, Braman NM, Keller MR, Rutherford SA, Lobdell N, Lopez CF, Lacy DB, McLean JA, Wikswo JP, Skaar EP, Caprioli RM.

J Proteome Res. 2017 Mar 3;16(3):1364-1375. doi: 10.1021/acs.jproteome.6b01004. Epub 2017 Feb 9.


Neuropathological Consequences of Gestational Exposure to Concentrated Ambient Fine and Ultrafine Particles in the Mouse.

Klocke C, Allen JL, Sobolewski M, Mayer-Pröschel M, Blum JL, Lauterstein D, Zelikoff JT, Cory-Slechta DA.

Toxicol Sci. 2017 Apr 1;156(2):492-508. doi: 10.1093/toxsci/kfx010.


Interactions between rates of temperature change and acclimation affect latitudinal patterns of warming tolerance.

Allen JL, Chown SL, Janion-Scheepers C, Clusella-Trullas S.

Conserv Physiol. 2016 Nov 9;4(1):cow053. eCollection 2016.


Hip and ankle responses for reactive balance emerge from varying priorities to reduce effort and kinematic excursion: A simulation study.

Versteeg CS, Ting LH, Allen JL.

J Biomech. 2016 Oct 3;49(14):3230-3237. doi: 10.1016/j.jbiomech.2016.08.007. Epub 2016 Aug 8.


Mendelian randomization analysis demonstrates that low vitamin D is unlikely causative for pediatric asthma.

Hysinger EB, Roizen JD, Mentch FD, Vazquez L, Connolly JJ, Bradfield JP, Almoguera B, Sleiman PM, Allen JL, Levine MA, Hakonarson H.

J Allergy Clin Immunol. 2016 Dec;138(6):1747-1749.e4. doi: 10.1016/j.jaci.2016.06.056. Epub 2016 Aug 20. No abstract available.


Correction to Absolute Quantitative MALDI Imaging Mass Spectrometry: A Case of Rifampicin in Liver Tissues.

Chumbley CW, Reyzer ML, Allen JL, Marriner GA, Via LE, Barry CE 3rd, Caprioli RM.

Anal Chem. 2016 Sep 6;88(17):8920. doi: 10.1021/acs.analchem.6b03125. Epub 2016 Aug 19. No abstract available.


Molecular epidemiology of an outbreak of clinical mastitis in sheep caused by Mannheimia haemolytica.

Omaleki L, Browning GF, Allen JL, Markham PF, Barber SR.

Vet Microbiol. 2016 Aug 15;191:82-7. doi: 10.1016/j.vetmic.2016.06.005. Epub 2016 Jun 14.


Allelopathic interactions involving benthic phototrophic microorganisms.

Allen JL, Ten-Hage L, Leflaive J.

Environ Microbiol Rep. 2016 Oct;8(5):752-762. doi: 10.1111/1758-2229.12436. Epub 2016 Jul 12.


How to make the most of your revision time.

Allen JL, Ashmore D.

BMJ. 2016 Jun 13;353:i1637. doi: 10.1136/sbmj.i1637. No abstract available.


Presumed Pseudotumor Cerebri Syndrome After Withdrawal of Inhaled Glucocorticoids.

Kwon YJ, Allen JL, Liu GT, McCormack SE.

Pediatrics. 2016 Jun;137(6). pii: e20152091. doi: 10.1542/peds.2015-2091. Epub 2016 May 17.


Mitochondrial genetic diversity, selection and recombination in a canine transmissible cancer.

Strakova A, Ní Leathlobhair M, Wang GD, Yin TT, Airikkala-Otter I, Allen JL, Allum KM, Bansse-Issa L, Bisson JL, Castillo Domracheva A, de Castro KF, Corrigan AM, Cran HR, Crawford JT, Cutter SM, Delgadillo Keenan L, Donelan EM, Faramade IA, Flores Reynoso E, Fotopoulou E, Fruean SN, Gallardo-Arrieta F, Glebova O, Häfelin Manrique RF, Henriques JJ, Ignatenko N, Koenig D, Lanza-Perea M, Lobetti R, Lopez Quintana AM, Losfelt T, Marino G, Martincorena I, Martínez Castañeda S, Martínez-López MF, Meyer M, Nakanwagi B, De Nardi AB, Neunzig W, Nixon SJ, Onsare MM, Ortega-Pacheco A, Peleteiro MC, Pye RJ, Reece JF, Rojas Gutierrez J, Sadia H, Schmeling SK, Shamanova O, Ssuna RK, Steenland-Smit AE, Svitich A, Thoya Ngoka I, Vițălaru BA, de Vos AP, de Vos JP, Walkinton O, Wedge DC, Wehrle-Martinez AS, van der Wel MG, Widdowson SA, Murchison EP.

Elife. 2016 May 17;5. pii: e14552. doi: 10.7554/eLife.14552.

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