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Items: 1 to 50 of 128

1.

Catalysts, autocatalysis and the origin of metabolism.

Preiner M, Xavier JC, Vieira ADN, Kleinermanns K, Allen JF, Martin WF.

Interface Focus. 2019 Dec 6;9(6):20190072. doi: 10.1098/rsfs.2019.0072. Epub 2019 Oct 18. Review.

2.

Nitrogenase Inhibition Limited Oxygenation of Earth's Proterozoic Atmosphere.

Allen JF, Thake B, Martin WF.

Trends Plant Sci. 2019 Nov;24(11):1022-1031. doi: 10.1016/j.tplants.2019.07.007. Epub 2019 Aug 22. Review.

3.

Molecular Recognition: How Photosynthesis Anchors the Mobile Antenna.

Allen JF, Nield J, Krauß N.

Trends Plant Sci. 2019 May;24(5):388-392. doi: 10.1016/j.tplants.2019.03.003. Epub 2019 Mar 28.

PMID:
30930004
4.

An Algal Greening of Land.

Martin WF, Allen JF.

Cell. 2018 Jul 12;174(2):256-258. doi: 10.1016/j.cell.2018.06.034.

5.

Translating photosynthesis.

Allen JF.

Nat Plants. 2018 Apr;4(4):199-200. doi: 10.1038/s41477-018-0132-y. No abstract available.

PMID:
29610533
6.

Oligomeric states in sodium ion-dependent regulation of cyanobacterial histidine kinase-2.

Ibrahim IM, Wang L, Puthiyaveetil S, Krauß N, Nield J, Allen JF.

Protoplasma. 2018 May;255(3):937-952. doi: 10.1007/s00709-017-1196-7. Epub 2017 Dec 30.

7.

The CoRR hypothesis for genes in organelles.

Allen JF.

J Theor Biol. 2017 Dec 7;434:50-57. doi: 10.1016/j.jtbi.2017.04.008. Epub 2017 Apr 11.

8.

Why we need to know the structure of phosphorylated chloroplast light-harvesting complex II.

Allen JF.

Physiol Plant. 2017 Sep;161(1):28-44. doi: 10.1111/ppl.12577. Epub 2017 May 31. Review.

PMID:
28393369
9.

Redox Tuning in Photosystem II.

Allen JF, Nield J.

Trends Plant Sci. 2017 Feb;22(2):97-99. doi: 10.1016/j.tplants.2016.11.011. Epub 2016 Dec 13. Review.

PMID:
27979715
10.
11.

Lokiarchaeon is hydrogen dependent.

Sousa FL, Neukirchen S, Allen JF, Lane N, Martin WF.

Nat Microbiol. 2016 Apr 4;1:16034. doi: 10.1038/nmicrobiol.2016.34.

PMID:
27572645
12.

Why Have Organelles Retained Genomes?

Allen JF, Martin WF.

Cell Syst. 2016 Feb 24;2(2):70-2. doi: 10.1016/j.cels.2016.02.007. Epub 2016 Feb 24.

14.

Probing the nucleotide-binding activity of a redox sensor: two-component regulatory control in chloroplasts.

Ibrahim IM, Puthiyaveetil S, Khan C, Allen JF.

Photosynth Res. 2016 Dec;130(1-3):93-101. Epub 2016 Feb 12.

15.

Why chloroplasts and mitochondria retain their own genomes and genetic systems: Colocation for redox regulation of gene expression.

Allen JF.

Proc Natl Acad Sci U S A. 2015 Aug 18;112(33):10231-8. doi: 10.1073/pnas.1500012112. Epub 2015 May 18. Review.

16.

Massively convergent evolution for ribosomal protein gene content in plastid and mitochondrial genomes.

Maier UG, Zauner S, Woehle C, Bolte K, Hempel F, Allen JF, Martin WF.

Genome Biol Evol. 2013;5(12):2318-29. doi: 10.1093/gbe/evt181.

17.

Female and male gamete mitochondria are distinct and complementary in transcription, structure, and genome function.

de Paula WB, Agip AN, Missirlis F, Ashworth R, Vizcay-Barrena G, Lucas CH, Allen JF.

Genome Biol Evol. 2013;5(10):1969-77. doi: 10.1093/gbe/evt147.

18.

Mitochondrial genome function and maternal inheritance.

Allen JF, de Paula WB.

Biochem Soc Trans. 2013 Oct;41(5):1298-304. doi: 10.1042/BST20130106.

PMID:
24059523
19.

Early bioenergetic evolution.

Sousa FL, Thiergart T, Landan G, Nelson-Sathi S, Pereira IA, Allen JF, Lane N, Martin WF.

Philos Trans R Soc Lond B Biol Sci. 2013 Jun 10;368(1622):20130088. doi: 10.1098/rstb.2013.0088. Print 2013 Jul 19. Review.

20.

Energy, ageing, fidelity and sex: oocyte mitochondrial DNA as a protected genetic template.

de Paula WB, Lucas CH, Agip AN, Vizcay-Barrena G, Allen JF.

Philos Trans R Soc Lond B Biol Sci. 2013 Jun 10;368(1622):20120263. doi: 10.1098/rstb.2012.0263. Print 2013 Jul 19.

21.

Evolutionary rewiring: a modified prokaryotic gene-regulatory pathway in chloroplasts.

Puthiyaveetil S, Ibrahim IM, Allen JF.

Philos Trans R Soc Lond B Biol Sci. 2013 Jun 10;368(1622):20120260. doi: 10.1098/rstb.2012.0260. Print 2013 Jul 19.

22.

Energy, genes and evolution: introduction to an evolutionary synthesis.

Lane N, Martin WF, Raven JA, Allen JF.

Philos Trans R Soc Lond B Biol Sci. 2013 Jun 10;368(1622):20120253. doi: 10.1098/rstb.2012.0253. Print 2013 Jul 19.

23.

Chlorophyll biosynthesis gene evolution indicates photosystem gene duplication, not photosystem merger, at the origin of oxygenic photosynthesis.

Sousa FL, Shavit-Grievink L, Allen JF, Martin WF.

Genome Biol Evol. 2013;5(1):200-16. doi: 10.1093/gbe/evs127.

24.

Genomes of Stigonematalean cyanobacteria (subsection V) and the evolution of oxygenic photosynthesis from prokaryotes to plastids.

Dagan T, Roettger M, Stucken K, Landan G, Koch R, Major P, Gould SB, Goremykin VV, Rippka R, Tandeau de Marsac N, Gugger M, Lockhart PJ, Allen JF, Brune I, Maus I, Pühler A, Martin WF.

Genome Biol Evol. 2013;5(1):31-44. doi: 10.1093/gbe/evs117.

25.

Queen Mary: nobody expects the Spanish Inquisition.

Allen JF, Missirlis F.

Lancet. 2012 May 12;379(9828):1785. doi: 10.1016/S0140-6736(12)60697-7. Epub 2012 May 4. No abstract available.

PMID:
22560152
26.

The neglected genome.

Pesole G, Allen JF, Lane N, Martin W, Rand DM, Schatz G, Saccone C.

EMBO Rep. 2012 Jun 1;13(6):473-4. doi: 10.1038/embor.2012.57. No abstract available.

27.

Chloroplast-mitochondria cross-talk in diatoms.

Prihoda J, Tanaka A, de Paula WB, Allen JF, Tirichine L, Bowler C.

J Exp Bot. 2012 Feb;63(4):1543-57. doi: 10.1093/jxb/err441. Epub 2012 Jan 20. Review.

PMID:
22268145
28.

A structural phylogenetic map for chloroplast photosynthesis.

Allen JF, de Paula WB, Puthiyaveetil S, Nield J.

Trends Plant Sci. 2011 Dec;16(12):645-55. doi: 10.1016/j.tplants.2011.10.004. Epub 2011 Nov 16. Review.

PMID:
22093371
29.

Discrete redox signaling pathways regulate photosynthetic light-harvesting and chloroplast gene transcription.

Allen JF, Santabarbara S, Allen CA, Puthiyaveetil S.

PLoS One. 2011;6(10):e26372. doi: 10.1371/journal.pone.0026372. Epub 2011 Oct 19.

30.

Planctomycetes and eukaryotes: a case of analogy not homology.

McInerney JO, Martin WF, Koonin EV, Allen JF, Galperin MY, Lane N, Archibald JM, Embley TM.

Bioessays. 2011 Nov;33(11):810-7. doi: 10.1002/bies.201100045. Epub 2011 Aug 22.

31.

Natural discourse reference generation reduces cognitive load in spoken systems.

Campana E, Tanenhaus MK, Allen JF, Remington R.

Nat Lang Eng. 2011 Jul 1;17(3):311-329.

32.

Oxidation-reduction signalling components in regulatory pathways of state transitions and photosystem stoichiometry adjustment in chloroplasts.

Puthiyaveetil S, Ibrahim IM, Allen JF.

Plant Cell Environ. 2012 Feb;35(2):347-59. doi: 10.1111/j.1365-3040.2011.02349.x. Epub 2011 Jun 28. Review.

33.

Transcriptional control of photosynthesis genes: the evolutionarily conserved regulatory mechanism in plastid genome function.

Puthiyaveetil S, Ibrahim IM, Jelicić B, Tomasić A, Fulgosi H, Allen JF.

Genome Biol Evol. 2010;2:888-96. doi: 10.1093/gbe/evq073. Epub 2010 Nov 11.

34.

Compositionality, language and intention: commentary on "Embodied language, best fit analysis, and formal compositionality" by J. Feldman.

Allen JF.

Phys Life Rev. 2010 Dec;7(4):414-5; discussion 421-3. doi: 10.1016/j.plrev.2010.10.007. Epub 2010 Oct 13. No abstract available.

PMID:
20970392
35.

How did LUCA make a living? Chemiosmosis in the origin of life.

Lane N, Allen JF, Martin W.

Bioessays. 2010 Apr;32(4):271-80. doi: 10.1002/bies.200900131.

PMID:
20108228
36.

Opinion: research and how to promote it in a university.

Allen JF.

Future Med Chem. 2010 Jan;2(1):15-20. doi: 10.4155/fmc.09.150. No abstract available.

37.

Tethering of ferredoxin:NADP+ oxidoreductase to thylakoid membranes is mediated by novel chloroplast protein TROL.

Jurić S, Hazler-Pilepić K, Tomasić A, Lepedus H, Jelicić B, Puthiyaveetil S, Bionda T, Vojta L, Allen JF, Schleiff E, Fulgosi H.

Plant J. 2009 Dec;60(5):783-94. doi: 10.1111/j.1365-313X.2009.03999.x. Epub 2009 Aug 13.

38.

Chloroplast two-component systems: evolution of the link between photosynthesis and gene expression.

Puthiyaveetil S, Allen JF.

Proc Biol Sci. 2009 Jun 22;276(1665):2133-45. doi: 10.1098/rspb.2008.1426. Epub 2009 Feb 25. Review.

39.

The ancestral symbiont sensor kinase CSK links photosynthesis with gene expression in chloroplasts.

Puthiyaveetil S, Kavanagh TA, Cain P, Sullivan JA, Newell CA, Gray JC, Robinson C, van der Giezen M, Rogers MB, Allen JF.

Proc Natl Acad Sci U S A. 2008 Jul 22;105(29):10061-6. doi: 10.1073/pnas.0803928105. Epub 2008 Jul 16.

40.

Why chloroplasts and mitochondria contain genomes.

Allen JF.

Comp Funct Genomics. 2003;4(1):31-6. doi: 10.1002/cfg.245.

41.

Protein diffusion and macromolecular crowding in thylakoid membranes.

Kirchhoff H, Haferkamp S, Allen JF, Epstein DB, Mullineaux CW.

Plant Physiol. 2008 Apr;146(4):1571-8. doi: 10.1104/pp.107.115170. Epub 2008 Feb 20.

42.

Transients in chloroplast gene transcription.

Puthiyaveetil S, Allen JF.

Biochem Biophys Res Commun. 2008 Apr 18;368(4):871-4. doi: 10.1016/j.bbrc.2008.01.167. Epub 2008 Feb 12.

PMID:
18275851
43.

Genes of cyanobacterial origin in plant nuclear genomes point to a heterocyst-forming plastid ancestor.

Deusch O, Landan G, Roettger M, Gruenheit N, Kowallik KV, Allen JF, Martin W, Dagan T.

Mol Biol Evol. 2008 Apr;25(4):748-61. doi: 10.1093/molbev/msn022. Epub 2008 Jan 24.

PMID:
18222943
44.

Evolutionary biology: out of thin air.

Allen JF, Martin W.

Nature. 2007 Feb 8;445(7128):610-2. No abstract available.

PMID:
17287803
45.

Celebrating the millennium: historical highlights of photosynthesis research, part 3.

Govindjee, Allen JF, Beatty JT.

Photosynth Res. 2004;80(1-3):1-13.

PMID:
16328808
46.

Photosynthesis: the processing of redox signals in chloroplasts.

Allen JF.

Curr Biol. 2005 Nov 22;15(22):R929-32. Review.

48.
49.

Energy transduction anchors genes in organelles.

Allen JF, Puthiyaveetil S, Ström J, Allen CA.

Bioessays. 2005 Apr;27(4):426-35. Review.

PMID:
15770674
50.

A redox switch hypothesis for the origin of two light reactions in photosynthesis.

Allen JF.

FEBS Lett. 2005 Feb 14;579(5):963-8. Epub 2005 Jan 21.

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