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Rapidly Growing Squamous Cell Carcinoma of the Tongue.

Myers D, Allen E, Essa A, Gbadamosi-Akindele M.

Cureus. 2020 Mar 2;12(3):e7164. doi: 10.7759/cureus.7164.


A school intervention for 13- to 15-year-olds to prevent dating and relationship violence: the Project Respect pilot cluster RCT.

Meiksin R, Crichton J, Dodd M, Morgan GS, Williams P, Willmott M, Allen E, Tilouche N, Sturgess J, Morris S, Barter C, Young H, Melendez-Torres GJ, Taylor B, Reyes HLMN, Elbourne D, Sweeting H, Hunt K, Ponsford R, Campbell R, Bonell C.

Southampton (UK): NIHR Journals Library; 2020 Mar.


Agricultural and empowerment pathways from land ownership to women's nutrition in India.

Harris-Fry H, Krishnan S, Beaumont E, Prost A, Gouda S, Mohanty S, Pradhan R, Rath S, Rath S, Pradhan S, Mishra NK, Allen E, Kadiyala S.

Matern Child Nutr. 2020 Mar 20:e12995. doi: 10.1111/mcn.12995. [Epub ahead of print]


Impact of school-based malaria case management on school attendance, health and education outcomes: a cluster randomised trial in southern Malawi.

Halliday KE, Witek-McManus SS, Opondo C, Mtali A, Allen E, Bauleni A, Ndau S, Phondiwa E, Ali D, Kachigunda V, Sande JH, Jawati M, Verney A, Chimuna T, Melody D, Moestue H, Roschnik N, Brooker SJ, Mathanga DP.

BMJ Glob Health. 2020 Jan 14;5(1):e001666. doi: 10.1136/bmjgh-2019-001666. eCollection 2020.


Germline Features Associated with Immune Infiltration in Solid Tumors.

Shahamatdar S, He MX, Reyna MA, Gusev A, AlDubayan SH, Van Allen EM, Ramachandran S.

Cell Rep. 2020 Mar 3;30(9):2900-2908.e4. doi: 10.1016/j.celrep.2020.02.039.


ATM Loss Confers Greater Sensitivity to ATR Inhibition than PARP Inhibition in Prostate Cancer.

Rafiei S, Fitzpatrick K, Liu D, Cai MY, Elmarakeby HA, Park J, Ricker C, Kochupurakkal BS, Choudhury AD, Hahn WC, Balk SP, Hwang JH, Van Allen EM, Mouw KW.

Cancer Res. 2020 Mar 3. pii: canres.3126.2019. doi: 10.1158/0008-5472.CAN-19-3126. [Epub ahead of print]


Development and validation of a simplified score to predict neonatal mortality risk among neonates weighing 2000 g or less (NMR-2000): an analysis using data from the UK and The Gambia.

Medvedev MM, Brotherton H, Gai A, Tann C, Gale C, Waiswa P, Elbourne D, Lawn JE, Allen E.

Lancet Child Adolesc Health. 2020 Apr;4(4):299-311. doi: 10.1016/S2352-4642(20)30021-3. Epub 2020 Feb 28.


Partners' motivations for accommodating posttraumatic stress disorder symptoms in service members: The reasons for accommodation of PTSD scale.

Renshaw KD, Allen ES, Fredman SJ, Giff ST, Kern C.

J Anxiety Disord. 2020 Feb 11;71:102199. doi: 10.1016/j.janxdis.2020.102199. [Epub ahead of print]


Multi-Omic Profiling of Melophlus Sponges Reveals Diverse Metabolomic and Microbiome Architectures that Are Non-overlapping with Ecological Neighbors.

Mohanty I, Podell S, Biggs JS, Garg N, Allen EE, Agarwal V.

Mar Drugs. 2020 Feb 19;18(2). pii: E124. doi: 10.3390/md18020124.


Dynamic N6-methyladenosine RNA methylation in brain and diseases.

Shafik AM, Allen EG, Jin P.

Epigenomics. 2020 Feb;12(4):371-380. doi: 10.2217/epi-2019-0260. Epub 2020 Feb 21.


Temporal Muscle as an Indicator of Sarcopenia is Independently Associated with Hunt and Kosnik Grade on Admission and the Modified Rankin Scale Score at 6 Months of Patients with Subarachnoid Hemorrhage Treated by Endovascular Coiling.

Katsuki M, Suzuki Y, Kunitoki K, Sato Y, Sasaki K, Mashiyama S, Matsuoka R, Allen E, Saimaru H, Sugawara R, Hotta A, Tominaga T.

World Neurosurg. 2020 Feb 14. pii: S1878-8750(20)30298-9. doi: 10.1016/j.wneu.2020.02.033. [Epub ahead of print]


The Papilla Access Tunnel Technique for the Treatment of Shallow Recession and Thin Tissue in the Mandibular Anterior Region.

Allen EP.

Int J Periodontics Restorative Dent. 2020 Mar/Apr;40(2):165-169. doi: 10.11607/prd.4525.


Tumor mutational burden and PTEN alterations as molecular correlates of response to PD-1/L1 blockade in metastatic triple-negative breast cancer.

Barroso-Sousa R, Keenan TE, Pernas S, Exman P, Jain E, Garrido-Castro AC, Hughes ME, Bychkovsky B, Umeton R, Files JL, Lindeman NI, MacConaill LE, Hodi FS, Krop I, Dillon DA, Winer EP, Wagle N, Lin NU, Mittendorf EA, Van Allen EM, Tolaney SM.

Clin Cancer Res. 2020 Feb 4. pii: clincanres.3507.2019. doi: 10.1158/1078-0432.CCR-19-3507. [Epub ahead of print]


Identification of cancer driver genes based on nucleotide context.

Dietlein F, Weghorn D, Taylor-Weiner A, Richters A, Reardon B, Liu D, Lander ES, Van Allen EM, Sunyaev SR.

Nat Genet. 2020 Feb;52(2):208-218. doi: 10.1038/s41588-019-0572-y. Epub 2020 Feb 3.


The role of site-specific therapy for cancers of unknown of primary: A meta-analysis.

Rassy E, Bakouny Z, Choueiri TK, Van Allen EM, Fizazi K, Greco FA, Pavlidis N.

Eur J Cancer. 2020 Mar;127:118-122. doi: 10.1016/j.ejca.2019.12.016. Epub 2020 Jan 30.


Operationalising kangaroo Mother care before stabilisation amongst low birth Weight Neonates in Africa (OMWaNA): protocol for a randomised controlled trial to examine mortality impact in Uganda.

Medvedev MM, Tumukunde V, Mambule I, Tann CJ, Waiswa P, Canter RR, Hansen CH, Ekirapa-Kiracho E, Katumba K, Pitt C, Greco G, Brotherton H, Elbourne D, Seeley J, Nyirenda M, Allen E, Lawn JE.

Trials. 2020 Jan 31;21(1):126. doi: 10.1186/s13063-019-4044-6.


Effects of sympatho-vagal interaction on ventricular electrophysiology and their modulation during beta-blockade.

Chin SH, Allen E, Brack KE, Ng GA.

J Mol Cell Cardiol. 2020 Feb;139:201-212. doi: 10.1016/j.yjmcc.2020.01.011. Epub 2020 Jan 29.


Violence against children and intimate partner violence against women: overlap and common contributing factors among caregiver-adolescent dyads.

Carlson C, Namy S, Norcini Pala A, Wainberg ML, Michau L, Nakuti J, Knight L, Allen E, Ikenberg C, Naker D, Devries K.

BMC Public Health. 2020 Jan 29;20(1):124. doi: 10.1186/s12889-019-8115-0.


Autophagy in animal development.

Allen EA, Baehrecke EH.

Cell Death Differ. 2020 Mar;27(3):903-918. doi: 10.1038/s41418-020-0497-0. Epub 2020 Jan 27. Review.


Human Mucosal-Associated Invariant T Cells in Older Individuals Display Expanded TCRαβ Clonotypes with Potent Antimicrobial Responses.

Loh L, Gherardin NA, Sant S, Grzelak L, Crawford JC, Bird NL, Koay HF, van de Sandt CE, Moreira ML, Lappas M, Allen EK, Crowe J, Loudovaris T, Flanagan KL, Quinn KM, Rossjohn J, Thomas PG, Eckle SBG, McCluskey J, Godfrey DI, Kedzierska K.

J Immunol. 2020 Mar 1;204(5):1119-1133. doi: 10.4049/jimmunol.1900774. Epub 2020 Jan 27.


Safety, Tolerability, Pharmacokinetics, and Antimalarial Activity of the Novel Plasmodium Phosphatidylinositol 4-Kinase Inhibitor MMV390048 in Healthy Volunteers.

Sinxadi P, Donini C, Johnstone H, Langdon G, Wiesner L, Allen E, Duparc S, Chalon S, McCarthy JS, Lorch U, Chibale K, Möhrle J, Barnes KI.

Antimicrob Agents Chemother. 2020 Mar 24;64(4). pii: e01896-19. doi: 10.1128/AAC.01896-19. Print 2020 Mar 24.


Context of Violence in Adolescence Cohort (CoVAC) study: protocol for a mixed methods longitudinal study in Uganda.

Devries K, Parkes J, Knight L, Allen E, Namy S, Datzberger S, Nalukenge W, Atuhaire L, Kyegombe N, Walakira E, Seeley J, Weiss HA, Naker D.

BMC Public Health. 2020 Jan 13;20(1):43. doi: 10.1186/s12889-019-7654-8.


Clustering of comorbid conditions among women who carry an FMR1 premutation.

Allen EG, Charen K, Hipp HS, Shubeck L, Amin A, He W, Hunter JE, Sherman SL.

Genet Med. 2020 Apr;22(4):758-766. doi: 10.1038/s41436-019-0733-5. Epub 2020 Jan 3.


Can selenium deficiency in Malawi be alleviated through consumption of agro-biofortified maize flour? Study protocol for a randomised, double-blind, controlled trial.

Joy EJM, Kalimbira AA, Gashu D, Ferguson EL, Sturgess J, Dangour AD, Banda L, Chiutsi-Phiri G, Bailey EH, Langley-Evans SC, Lark RM, Millar K, Young SD, Matandika L, Mfutso-Bengo J, Phuka JC, Phiri FP, Gondwe J, Ander EL, Lowe NM, Nalivata PC, Broadley MR, Allen E.

Trials. 2019 Dec 30;20(1):795. doi: 10.1186/s13063-019-3894-2.


A model combining clinical and genomic factors to predict response to PD-1/PD-L1 blockade in advanced urothelial carcinoma.

Nassar AH, Mouw KW, Jegede O, Shinagare AB, Kim J, Liu CJ, Pomerantz M, Harshman LC, Van Allen EM, Wei XX, McGregor B, Choudhury AD, Preston MA, Dong F, Signoretti S, Lindeman NI, Bellmunt J, Choueiri TK, Sonpavde G, Kwiatkowski DJ.

Br J Cancer. 2020 Feb;122(4):555-563. doi: 10.1038/s41416-019-0686-0. Epub 2019 Dec 20.


The Safe Start trial to assess the effect of an infant hygiene intervention on enteric infections and diarrhoea in low-income informal neighbourhoods of Kisumu, Kenya: a study protocol for a cluster randomized controlled trial.

Mumma J, Simiyu S, Aseyo E, Anderson J, Czerniewska A, Allen E, Dreibelbis R, Baker KK, Cumming O.

BMC Infect Dis. 2019 Dec 19;19(1):1066. doi: 10.1186/s12879-019-4657-0.


Maternal BMI mediates the impact of crop-related agricultural work during pregnancy on infant length in rural Pakistan: a mediation analysis of cross-sectional data.

Pradeilles R, Allen E, Gazdar H, Bux Mallah H, Budhani A, Mehmood R, Mazhar S, Mysorewala A, Aslam S, Dangour AD, Ferguson E.

BMC Pregnancy Childbirth. 2019 Dec 17;19(1):504. doi: 10.1186/s12884-019-2638-3.


Prevalence of pathogenic germline cancer risk variants in high-risk urothelial carcinoma.

Nassar AH, Abou Alaiwi S, AlDubayan SH, Moore N, Mouw KW, Kwiatkowski DJ, Choueiri TK, Curran C, Berchuck JE, Harshman LC, Nuzzo PV, Chanza NM, Van Allen E, Esplin ED, Yang S, Callis T, Garber JE, Rana HQ, Sonpavde G.

Genet Med. 2020 Apr;22(4):709-718. doi: 10.1038/s41436-019-0720-x. Epub 2019 Dec 17.


Mobilization and collection of cells in the hematologic compartment for cellular therapies: Stem cell collection with G-CSF/plerixafor, collecting lymphocytes/monocytes.

Allen ES, Conry-Cantilena C.

Semin Hematol. 2019 Oct;56(4):248-256. doi: 10.1053/j.seminhematol.2019.11.003. Epub 2019 Nov 8. Review.


Harmonization of Tumor Mutational Burden Quantification and Association With Response to Immune Checkpoint Blockade in Non-Small-Cell Lung Cancer.

Vokes NI, Liu D, Ricciuti B, Jimenez-Aguilar E, Rizvi H, Dietlein F, He MX, Margolis CA, Elmarakeby HA, Girshman J, Adeni A, Sanchez-Vega F, Schultz N, Dahlberg S, Zehir A, Jänne PA, Nishino M, Umeton R, Sholl LM, Van Allen EM, Hellmann MD, Awad MM.

JCO Precis Oncol. 2019;3. doi: 10.1200/PO.19.00171. Epub 2019 Nov 12.


A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.

Chernus JM, Allen EG, Zeng Z, Hoffman ER, Hassold TJ, Feingold E, Sherman SL.

PLoS Genet. 2019 Dec 12;15(12):e1008414. doi: 10.1371/journal.pgen.1008414. eCollection 2019 Dec.


Ethnicity-specific and overlapping alterations of brain hydroxymethylome in Alzheimer's disease.

Qin L, Xu Q, Li Z, Chen L, Li Y, Yang N, Liu Z, Guo J, Shen L, Allen EG, Chen C, Ma C, Wu H, Zhu X, Jin P, Tang B.

Hum Mol Genet. 2020 Jan 1;29(1):149-158. doi: 10.1093/hmg/ddz273.


Longitudinal bioluminescent imaging of HIV-1 infection during antiretroviral therapy and treatment interruption in humanized mice.

Ventura JD, Beloor J, Allen E, Zhang T, Haugh KA, Uchil PD, Ochsenbauer C, Kieffer C, Kumar P, Hope TJ, Mothes W.

PLoS Pathog. 2019 Dec 5;15(12):e1008161. doi: 10.1371/journal.ppat.1008161. eCollection 2019 Dec.


Integrative molecular and clinical modeling of clinical outcomes to PD1 blockade in patients with metastatic melanoma.

Liu D, Schilling B, Liu D, Sucker A, Livingstone E, Jerby-Amon L, Zimmer L, Gutzmer R, Satzger I, Loquai C, Grabbe S, Vokes N, Margolis CA, Conway J, He MX, Elmarakeby H, Dietlein F, Miao D, Tracy A, Gogas H, Goldinger SM, Utikal J, Blank CU, Rauschenberg R, von Bubnoff D, Krackhardt A, Weide B, Haferkamp S, Kiecker F, Izar B, Garraway L, Regev A, Flaherty K, Paschen A, Van Allen EM, Schadendorf D.

Nat Med. 2019 Dec;25(12):1916-1927. doi: 10.1038/s41591-019-0654-5. Epub 2019 Dec 2.


Domains of transmission and association of community, school, and household sanitation with soil-transmitted helminth infections among children in coastal Kenya.

Oswald WE, Halliday KE, Mcharo C, Witek-McManus S, Kepha S, Gichuki PM, Cano J, Diaz-Ordaz K, Allen E, Mwandawiro CS, Anderson RM, Brooker SJ, Pullan RL, Njenga SM.

PLoS Negl Trop Dis. 2019 Nov 25;13(11):e0007488. doi: 10.1371/journal.pntd.0007488. eCollection 2019 Nov.


CREB5 Promotes Resistance to Androgen-Receptor Antagonists and Androgen Deprivation in Prostate Cancer.

Hwang JH, Seo JH, Beshiri ML, Wankowicz S, Liu D, Cheung A, Li J, Qiu X, Hong AL, Botta G, Golumb L, Richter C, So J, Sandoval GJ, Giacomelli AO, Ly SH, Han C, Dai C, Pakula H, Sheahan A, Piccioni F, Gjoerup O, Loda M, Sowalsky AG, Ellis L, Long H, Root DE, Kelly K, Van Allen EM, Freedman ML, Choudhury AD, Hahn WC.

Cell Rep. 2019 Nov 19;29(8):2355-2370.e6. doi: 10.1016/j.celrep.2019.10.068.


Evaluating maize phenotypic variance, heritability, and yield relationships at multiple biological scales across agronomically relevant environments.

Tucker SL, Dohleman FG, Grapov D, Flagel L, Yang S, Wegener KM, Kosola K, Swarup S, Rapp RA, Bedair M, Halls SC, Glenn KC, Hall MA, Allen E, Rice EA.

Plant Cell Environ. 2020 Apr;43(4):880-902. doi: 10.1111/pce.13681. Epub 2020 Feb 5.


Results of a Multicenter Phase II Study of Atezolizumab and Bevacizumab for Patients With Metastatic Renal Cell Carcinoma With Variant Histology and/or Sarcomatoid Features.

McGregor BA, McKay RR, Braun DA, Werner L, Gray K, Flaifel A, Signoretti S, Hirsch MS, Steinharter JA, Bakouny Z, Flippot R, Wei XX, Choudhury A, Kilbridge K, Freeman GJ, Van Allen EM, Harshman LC, McDermott DF, Vaishampayan U, Choueiri TK.

J Clin Oncol. 2020 Jan 1;38(1):63-70. doi: 10.1200/JCO.19.01882. Epub 2019 Nov 13.


Teacher Burnout and Contextual and Compositional Elements of School Environment.

Shackleton N, Bonell C, Jamal F, Allen E, Mathiot A, Elbourne D, Viner R.

J Sch Health. 2019 Dec;89(12):977-993. doi: 10.1111/josh.12839.


Modifying the secondary school environment to reduce bullying and aggression: the INCLUSIVE cluster RCT.

Bonell C, Allen E, Warren E, McGowan J, Bevilacqua L, Jamal F, Sadique Z, Legood R, Wiggins M, Opondo C, Mathiot A, Sturgess J, Paparini S, Fletcher A, Perry M, West G, Tancred T, Scott S, Elbourne D, Christie D, Bond L, Viner RM.

Southampton (UK): NIHR Journals Library; 2019 Oct.


Scaling computational genomics to millions of individuals with GPUs.

Taylor-Weiner A, Aguet F, Haradhvala NJ, Gosai S, Anand S, Kim J, Ardlie K, Van Allen EM, Getz G.

Genome Biol. 2019 Nov 1;20(1):228. doi: 10.1186/s13059-019-1836-7.


Coverage and equity of maternal and newborn health care in rural Nigeria, Ethiopia and India.

Marchant T, Beaumont E, Makowiecka K, Berhanu D, Tessema T, Gautham M, Singh K, Umar N, Usman AU, Tomlin K, Cousens S, Allen E, Schellenberg JA.

CMAJ. 2019 Oct 28;191(43):E1179-E1188. doi: 10.1503/cmaj.190219.


Altered 5-Hydroxymethylcytosine Landscape in Primary Gastric Adenocarcinoma.

Liu H, Xu T, Cheng Y, Jin MH, Chang MY, Shu Q, Allen EG, Jin P, Wang X.

DNA Cell Biol. 2019 Dec;38(12):1460-1469. doi: 10.1089/dna.2019.4965. Epub 2019 Oct 29.


Duodenal Adenocarcinoma at the Ligament of Treitz: Management and Outcome.

Biello AR, Lin-Hurtubise KM, Condon FJ, Allen EJ.

Hawaii J Health Soc Welf. 2019 Oct;78(10):316-319.


Preventing violence against children in schools (PVACS): protocol for a cluster randomised controlled trial of the EmpaTeach behavioural intervention in Nyarugusu refugee camp.

Devries KM, Fabbri C, Allen E, Barongo V, Shayo E, Greco G, Kaemingk M, Qiu M, Steinacher R, Tol W, Rodrigues K.

BMC Public Health. 2019 Oct 15;19(1):1295. doi: 10.1186/s12889-019-7627-y.


Sequence and Expression Differences Underlie Functional Specialization of Arabidopsis MicroRNAs miR159 and miR319.

Palatnik JF, Wollmann H, Schommer C, Schwab R, Boisbouvier J, Rodriguez R, Warthmann N, Allen E, Dezulian T, Huson D, Carrington JC, Weigel D.

Dev Cell. 2019 Oct 7;51(1):129. doi: 10.1016/j.devcel.2019.09.016. No abstract available.


Metabolomic adaptations and correlates of survival to immune checkpoint blockade.

Li H, Bullock K, Gurjao C, Braun D, Shukla SA, Bossé D, Lalani AA, Gopal S, Jin C, Horak C, Wind-Rotolo M, Signoretti S, McDermott DF, Freeman GJ, Van Allen EM, Schreiber SL, Stephen Hodi F, Sellers WR, Garraway LA, Clish CB, Choueiri TK, Giannakis M.

Nat Commun. 2019 Sep 25;10(1):4346. doi: 10.1038/s41467-019-12361-9.


The association between maternal occupation and down syndrome: A report from the national Down syndrome project.

Keen C, Hunter JE, Allen EG, Rocheleau C, Waters M, Sherman SL.

Int J Hyg Environ Health. 2020 Jan;223(1):207-213. doi: 10.1016/j.ijheh.2019.09.001. Epub 2019 Sep 10.


Differences in root phenology and water depletion by an invasive grass explains persistence in a Mediterranean ecosystem.

Phillips ML, McNellis BE, Allen MF, Allen EB.

Am J Bot. 2019 Sep;106(9):1210-1218. doi: 10.1002/ajb2.1344. Epub 2019 Sep 9.


Finding the edge of the seat.

Van Allen EM.

Nat Med. 2019 Sep;25(9):1328. doi: 10.1038/s41591-019-0557-5. No abstract available.


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