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Items: 43

1.

Reorganization of acyl flux through the lipid metabolic network in oil-accumulating tobacco leaves.

Zhou XR, Bhandari S, Johnson BS, Kotapati HK, Allen DK, Vanhercke T, Bates PD.

Plant Physiol. 2019 Dec 2. pii: pp.00667.2019. doi: 10.1104/pp.19.00667. [Epub ahead of print]

2.

Accurate and efficient amino acid analysis for protein quantification using hydrophilic interaction chromatography coupled tandem mass spectrometry.

Kambhampati S, Li J, Evans BS, Allen DK.

Plant Methods. 2019 May 11;15:46. doi: 10.1186/s13007-019-0430-z. eCollection 2019.

3.

Cyanobacterial carboxysome mutant analysis reveals the influence of enzyme compartmentalization on cellular metabolism and metabolic network rigidity.

Abernathy MH, Czajka JJ, Allen DK, Hill NC, Cameron JC, Tang YJ.

Metab Eng. 2019 Jul;54:222-231. doi: 10.1016/j.ymben.2019.04.010. Epub 2019 Apr 25.

4.

Root imaging showing comparisons in root distribution and ontogeny in novel Festulolium populations and closely related perennial ryegrass varieties.

Humphreys MW, Doonan JH, Boyle R, Rodriguez AC, Marley CL, Williams K, Farrell MS, Brook J, Gasior D, Loka D, Collins RP, Marshall AH, Allen DK, Yadav RS, Dungait JAJ, Murray P, Harper JA.

Food Energy Secur. 2018 Nov;7(4):e00145. doi: 10.1002/fes3.145. Epub 2018 Oct 2.

5.

Deciphering cyanobacterial phenotypes for fast photoautotrophic growth via isotopically nonstationary metabolic flux analysis.

Abernathy MH, Yu J, Ma F, Liberton M, Ungerer J, Hollinshead WD, Gopalakrishnan S, He L, Maranas CD, Pakrasi HB, Allen DK, Tang YJ.

Biotechnol Biofuels. 2017 Nov 16;10:273. doi: 10.1186/s13068-017-0958-y. eCollection 2017.

6.

Isotopically Nonstationary Metabolic Flux Analysis (INST-MFA) of Photosynthesis and Photorespiration in Plants.

Ma F, Jazmin LJ, Young JD, Allen DK.

Methods Mol Biol. 2017;1653:167-194. doi: 10.1007/978-1-4939-7225-8_12.

PMID:
28822133
7.

Rerouting of carbon flux in a glycogen mutant of cyanobacteria assessed via isotopically non-stationary 13 C metabolic flux analysis.

Hendry JI, Prasannan C, Ma F, Möllers KB, Jaiswal D, Digmurti M, Allen DK, Frigaard NU, Dasgupta S, Wangikar PP.

Biotechnol Bioeng. 2017 Oct;114(10):2298-2308. doi: 10.1002/bit.26350. Epub 2017 Jun 29.

PMID:
28600876
8.

Crops In Silico: Generating Virtual Crops Using an Integrative and Multi-scale Modeling Platform.

Marshall-Colon A, Long SP, Allen DK, Allen G, Beard DA, Benes B, von Caemmerer S, Christensen AJ, Cox DJ, Hart JC, Hirst PM, Kannan K, Katz DS, Lynch JP, Millar AJ, Panneerselvam B, Price ND, Prusinkiewicz P, Raila D, Shekar RG, Shrivastava S, Shukla D, Srinivasan V, Stitt M, Turk MJ, Voit EO, Wang Y, Yin X, Zhu XG.

Front Plant Sci. 2017 May 15;8:786. doi: 10.3389/fpls.2017.00786. eCollection 2017.

9.

Phospholipase Dζ Enhances Diacylglycerol Flux into Triacylglycerol.

Yang W, Wang G, Li J, Bates PD, Wang X, Allen DK.

Plant Physiol. 2017 May;174(1):110-123. doi: 10.1104/pp.17.00026. Epub 2017 Mar 21.

10.

Synergism between Inositol Polyphosphates and TOR Kinase Signaling in Nutrient Sensing, Growth Control, and Lipid Metabolism in Chlamydomonas.

Couso I, Evans BS, Li J, Liu Y, Ma F, Diamond S, Allen DK, Umen JG.

Plant Cell. 2016 Sep;28(9):2026-2042. doi: 10.1105/tpc.16.00351. Epub 2016 Sep 6.

11.

Perspectives for a better understanding of the metabolic integration of photorespiration within a complex plant primary metabolism network.

Hodges M, Dellero Y, Keech O, Betti M, Raghavendra AS, Sage R, Zhu XG, Allen DK, Weber AP.

J Exp Bot. 2016 May;67(10):3015-26. doi: 10.1093/jxb/erw145. Epub 2016 Apr 6. Review.

PMID:
27053720
12.

Assessing compartmentalized flux in lipid metabolism with isotopes.

Allen DK.

Biochim Biophys Acta. 2016 Sep;1861(9 Pt B):1226-1242. doi: 10.1016/j.bbalip.2016.03.017. Epub 2016 Mar 18. Review.

13.

Interactions of C4 Subtype Metabolic Activities and Transport in Maize Are Revealed through the Characterization of DCT2 Mutants.

Weissmann S, Ma F, Furuyama K, Gierse J, Berg H, Shao Y, Taniguchi M, Allen DK, Brutnell TP.

Plant Cell. 2016 Feb;28(2):466-84. doi: 10.1105/tpc.15.00497. Epub 2016 Jan 26.

14.

Quantifying plant phenotypes with isotopic labeling & metabolic flux analysis.

Allen DK.

Curr Opin Biotechnol. 2016 Feb;37:45-52. doi: 10.1016/j.copbio.2015.10.002. Epub 2015 Nov 21. Review.

15.

Tracking the metabolic pulse of plant lipid production with isotopic labeling and flux analyses: Past, present and future.

Allen DK, Bates PD, Tjellström H.

Prog Lipid Res. 2015 Apr;58:97-120. doi: 10.1016/j.plipres.2015.02.002. Epub 2015 Mar 13. Review.

16.

Transcriptional response to petiole heat girdling in cassava.

Zhang Y, Ding Z, Ma F, Chauhan RD, Allen DK, Brutnell TP, Wang W, Peng M, Li P.

Sci Rep. 2015 Feb 12;5:8414. doi: 10.1038/srep08414.

17.

Isotopically nonstationary 13C flux analysis of changes in Arabidopsis thaliana leaf metabolism due to high light acclimation.

Ma F, Jazmin LJ, Young JD, Allen DK.

Proc Natl Acad Sci U S A. 2014 Nov 25;111(47):16967-72. doi: 10.1073/pnas.1319485111. Epub 2014 Nov 3.

18.

Cytosolic phosphorylating glyceraldehyde-3-phosphate dehydrogenases affect Arabidopsis cellular metabolism and promote seed oil accumulation.

Guo L, Ma F, Wei F, Fanella B, Allen DK, Wang X.

Plant Cell. 2014 Jul;26(7):3023-35. doi: 10.1105/tpc.114.126946. Epub 2014 Jul 2.

19.

Analysis of isotopic labeling in peptide fragments by tandem mass spectrometry.

Allen DK, Evans BS, Libourel IG.

PLoS One. 2014 Mar 13;9(3):e91537. doi: 10.1371/journal.pone.0091537. eCollection 2014.

20.

Quantification of peptide m/z distributions from 13C-labeled cultures with high-resolution mass spectrometry.

Allen DK, Goldford J, Gierse JK, Mandy D, Diepenbrock C, Libourel IG.

Anal Chem. 2014 Feb 4;86(3):1894-901. doi: 10.1021/ac403985w. Epub 2014 Jan 21.

21.

Metabolic flux analysis using ¹³C peptide label measurements.

Mandy DE, Goldford JE, Yang H, Allen DK, Libourel IG.

Plant J. 2014 Feb;77(3):476-86. doi: 10.1111/tpj.12390. Epub 2014 Jan 21.

22.

Isotopically nonstationary MFA (INST-MFA) of autotrophic metabolism.

Jazmin LJ, O'Grady JP, Ma F, Allen DK, Morgan JA, Young JD.

Methods Mol Biol. 2014;1090:181-210. doi: 10.1007/978-1-62703-688-7_12.

PMID:
24222417
23.

Isotopomer measurement techniques in metabolic flux analysis II: mass spectrometry.

Young JD, Allen DK, Morgan JA.

Methods Mol Biol. 2014;1083:85-108. doi: 10.1007/978-1-62703-661-0_7.

PMID:
24218212
24.

Carbon and nitrogen provisions alter the metabolic flux in developing soybean embryos.

Allen DK, Young JD.

Plant Physiol. 2013 Mar;161(3):1458-75. doi: 10.1104/pp.112.203299. Epub 2013 Jan 11.

25.

The use of failure mode and effect analysis in a radiation oncology setting: the Cancer Treatment Centers of America experience.

Denny DS, Allen DK, Worthington N, Gupta D.

J Healthc Qual. 2014 Jan-Feb;36(1):18-28. doi: 10.1111/j.1945-1474.2011.00199.x. Epub 2012 Feb 24.

PMID:
22364244
26.

Isotope labelling of Rubisco subunits provides in vivo information on subcellular biosynthesis and exchange of amino acids between compartments.

Allen DK, Laclair RW, Ohlrogge JB, Shachar-Hill Y.

Plant Cell Environ. 2012 Jul;35(7):1232-44. doi: 10.1111/j.1365-3040.2012.02485.x. Epub 2012 Feb 24.

27.

Rapid kinetic labeling of Arabidopsis cell suspension cultures: implications for models of lipid export from plastids.

Tjellström H, Yang Z, Allen DK, Ohlrogge JB.

Plant Physiol. 2012 Feb;158(2):601-11. doi: 10.1104/pp.111.186122. Epub 2011 Nov 29.

28.

A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2.

Thiele I, Hyduke DR, Steeb B, Fankam G, Allen DK, Bazzani S, Charusanti P, Chen FC, Fleming RM, Hsiung CA, De Keersmaecker SC, Liao YC, Marchal K, Mo ML, Özdemir E, Raghunathan A, Reed JL, Shin SI, Sigurbjörnsdóttir S, Steinmann J, Sudarsan S, Swainston N, Thijs IM, Zengler K, Palsson BO, Adkins JN, Bumann D.

BMC Syst Biol. 2011 Jan 18;5:8. doi: 10.1186/1752-0509-5-8.

29.

Synergy between (13)C-metabolic flux analysis and flux balance analysis for understanding metabolic adaptation to anaerobiosis in E. coli.

Chen X, Alonso AP, Allen DK, Reed JL, Shachar-Hill Y.

Metab Eng. 2011 Jan;13(1):38-48. doi: 10.1016/j.ymben.2010.11.004. Epub 2010 Dec 1.

PMID:
21129495
30.

Metabolic flux analysis in plants: coping with complexity.

Allen DK, Libourel IG, Shachar-Hill Y.

Plant Cell Environ. 2009 Sep;32(9):1241-57. doi: 10.1111/j.1365-3040.2009.01992.x. Epub 2009 Apr 22. Review.

31.

The role of light in soybean seed filling metabolism.

Allen DK, Ohlrogge JB, Shachar-Hill Y.

Plant J. 2009 Apr;58(2):220-34. doi: 10.1111/j.1365-313X.2008.03771.x. Epub 2008 Dec 10.

32.

Compartment-specific labeling information in 13C metabolic flux analysis of plants.

Allen DK, Shachar-Hill Y, Ohlrogge JB.

Phytochemistry. 2007 Aug-Sep;68(16-18):2197-210. Epub 2007 May 25.

PMID:
17532016
33.

Kinetic characterization of enhanced lipase activity on oil bodies.

Allen DK, Tao BY.

Bioprocess Biosyst Eng. 2007 Jul;30(4):271-9.

PMID:
17443353
34.

Defending criticized veterinarian.

Allen DK.

J Am Vet Med Assoc. 2003 Jul 1;223(1):41-2. No abstract available.

PMID:
12839055
35.
36.

Incorporation of (15)N from spiked cattle dung pats into soil under two moorland plant communities.

Shepherd MJ, Anderson JM, Bol R, Allen DK.

Rapid Commun Mass Spectrom. 2000;14(15):1361-7.

PMID:
10920356
37.

Believes puppy mills should be eradicated.

Allen DK.

J Am Vet Med Assoc. 2000 Jun 15;216(12):1902. No abstract available.

PMID:
10863584
38.

Mange, overpopulation in dogs on the rise in postwar Tarawa.

Allen DK.

J Am Vet Med Assoc. 1998 Apr 15;212(8):1181. No abstract available.

PMID:
9569142
39.

High urine concentrations of basic fibroblast growth factor in dogs with bladder cancer.

Allen DK, Waters DJ, Knapp DW, Kuczek T.

J Vet Intern Med. 1996 Jul-Aug;10(4):231-4.

40.

Pet overpopulation.

Allen DK.

J Am Vet Med Assoc. 1992 Feb 1;200(3):256. No abstract available.

PMID:
1548150
41.

Puppy mills.

Allen DK.

J Am Vet Med Assoc. 1991 Apr 1;198(7):1103-4. No abstract available.

PMID:
2045318
42.
43.

Function of pituitary-thyroid axis in copper-deficient rats.

Allen DK, Hassel CA, Lei KY.

J Nutr. 1982 Nov;112(11):2043-6.

PMID:
6813435

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