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Simulating lightning NO production in CMAQv5.2: evolution of scientific updates.

Kang D, Pickering KE, Allen DJ, Foley KM, Wong DC, Mathur R, Roselle SJ.

Geosci Model Dev. 2019 Jul 18;12(7):3071-3083. doi: 10.5194/gmd-12-3071-2019.


Technical and surgical causes of outliers after computer navigated total knee arthroplasty.

Shah SM, Sciberras NC, Allen DJ, Picard F.

J Orthop. 2019 Nov 6;18:171-176. doi: 10.1016/j.jor.2019.10.016. eCollection 2020 Mar-Apr.


Simulating lightning NO production in CMAQv5.2: performance evaluations.

Kang D, Foley KM, Mathur R, Roselle SJ, Pickering KE, Allen DJ.

Geosci Model Dev. 2019;12(10):4409-4424. doi: 10.5194/gmd-12-4409-2019.


An interactive data visualisation application to investigate nosocomial transmission of infections.

Smith CM, Allen DJ, Nawaz S, Kozlakidis Z, Nastouli E, Hayward A, Ward KN.

Version 2. Wellcome Open Res. 2019 Aug 20 [revised 2019 Jan 1];4:100. doi: 10.12688/wellcomeopenres.15240.2. eCollection 2019.


Effectiveness of oral rotavirus vaccination in England against rotavirus-confirmed and all-cause acute gastroenteritis.

Walker JL, Andrews NJ, Atchison CJ, Collins S, Allen DJ, Ramsay ME, Ladhani SN, Thomas SL.

Vaccine X. 2019 Jan 4;1:100005. doi: 10.1016/j.jvacx.2019.100005. eCollection 2019 Apr 11.


Impact of rotavirus vaccination on rotavirus genotype distribution and diversity in England, September 2006 to August 2016.

Hungerford D, Allen DJ, Nawaz S, Collins S, Ladhani S, Vivancos R, Iturriza-Gómara M.

Euro Surveill. 2019 Feb;24(6). doi: 10.2807/1560-7917.ES.2019.24.6.1700774.


Norovirus strain types found within the second infectious intestinal diseases (IID2) study an analysis of norovirus circulating in the community.

Harris JP, Iturriza-Gomara M, Allen DJ, Kelly S, O'Brien SJ.

BMC Infect Dis. 2019 Jan 25;19(1):87. doi: 10.1186/s12879-019-3706-z.


Enterovirus and parechovirus meningitis in infants younger than 90 days old in the UK and Republic of Ireland: a British Paediatric Surveillance Unit study.

Kadambari S, Braccio S, Ribeiro S, Allen DJ, Pebody R, Brown D, Cunney R, Sharland M, Ladhani S.

Arch Dis Child. 2019 Jun;104(6):552-557. doi: 10.1136/archdischild-2018-315643. Epub 2018 Dec 8.


Influence of Nonpolio Enteroviruses and the Bacterial Gut Microbiota on Oral Poliovirus Vaccine Response: A Study from South India.

Praharaj I, Parker EPK, Giri S, Allen DJ, Silas S, Revathi R, Kaliappan SP, John J, Prasad JH, Kampmann B, Iturriza-Gómara M, Grassly NC, Kang G.

J Infect Dis. 2019 Apr 8;219(8):1178-1186. doi: 10.1093/infdis/jiy568.


Evaluation of Parameterized Convective Transport of Trace Gases in Simulation of Storms Observed During the DC3 Field Campaign.

Li Y, Pickering KE, Barth MC, Bela MM, Cummings KA, Allen DJ.

J Geophys Res Atmos. 2018 Sep 14;123(19):11238-11261. doi: 10.1029/2018jd028779.


Emergence of Coxsackie A6 hand-foot-and-mouth disease and comparative severity of Coxsackie B vs. echovirus infections, 2014-2016, UK.

Teo KW, Lai FY, Bandi S, Allen DJ, Tang JW.

J Infect. 2019 Jan;78(1):75-86. doi: 10.1016/j.jinf.2018.08.007. Epub 2018 Aug 19. No abstract available.


Comparing the Clinical Severity of Disease Caused by Enteroviruses and Human Parechoviruses in Neonates and Infants.

Black S, Bradley C, Lai FY, Shenoy S, Bandi S, Allen DJ, Tang JW.

Pediatr Infect Dis J. 2019 Feb;38(2):e36-e38. doi: 10.1097/INF.0000000000002145.


Nonadherence with inhaled preventer therapy in severe asthmatic patients on long-term omalizumab.

Allen DJ, Holmes LJ, Hince KA, Daly R, Ustabashi C, Tavernier G.

Eur Respir J. 2018 Aug 16;52(2). pii: 1801025. doi: 10.1183/13993003.01025-2018. Print 2018 Aug. No abstract available.


Increased detection of human parechovirus infection in infants in England during 2016: epidemiology and clinical characteristics.

Ferreras Antolín L, Kadambari S, Braccio S, Tang JW, Xerry J, Allen DJ, Ladhani SN; Parechovirus Surveillance Network.

Arch Dis Child. 2018 Nov;103(11):1061-1066. doi: 10.1136/archdischild-2017-314281. Epub 2018 Jun 5.


Dynamic bacterial and fungal microbiomes during sweet sorghum ensiling impact bioethanol production.

Gallagher D, Parker D, Allen DJ, Tsesmetzis N.

Bioresour Technol. 2018 Sep;264:163-173. doi: 10.1016/j.biortech.2018.05.053. Epub 2018 May 26.


Estimating the Hospital Burden of Norovirus-Associated Gastroenteritis in England and Its Opportunity Costs for Nonadmitted Patients.

Sandmann FG, Shallcross L, Adams N, Allen DJ, Coen PG, Jeanes A, Kozlakidis Z, Larkin L, Wurie F, Robotham JV, Jit M, Deeny SR.

Clin Infect Dis. 2018 Aug 16;67(5):693-700. doi: 10.1093/cid/ciy167.


Molecular surveillance of norovirus, 2005-16: an epidemiological analysis of data collected from the NoroNet network.

van Beek J, de Graaf M, Al-Hello H, Allen DJ, Ambert-Balay K, Botteldoorn N, Brytting M, Buesa J, Cabrerizo M, Chan M, Cloak F, Di Bartolo I, Guix S, Hewitt J, Iritani N, Jin M, Johne R, Lederer I, Mans J, Martella V, Maunula L, McAllister G, Niendorf S, Niesters HG, Podkolzin AT, Poljsak-Prijatelj M, Rasmussen LD, Reuter G, Tuite G, Kroneman A, Vennema H, Koopmans MPG; NoroNet.

Lancet Infect Dis. 2018 May;18(5):545-553. doi: 10.1016/S1473-3099(18)30059-8. Epub 2018 Jan 26.


Prospective cohort study to investigate the burden and transmission of acute gastroenteritis in care homes: a study protocol.

Inns T, Pulawska-Czub A, Harris JP, Vivancos R, Read JM, Beeching NJ, Allen DJ, Iturriza-Gomara M, O'Brien SJ.

BMJ Open. 2017 Nov 3;7(11):e018867. doi: 10.1136/bmjopen-2017-018867.


Nitrogen Reserve Pools in Two Miscanthus × giganteus Genotypes under Contrasting N Managements.

Dierking RM, Allen DJ, Cunningham SM, Brouder SM, Volenec JJ.

Front Plant Sci. 2017 Sep 20;8:1618. doi: 10.3389/fpls.2017.01618. eCollection 2017.


Methods for ascertaining norovirus disease burdens.

Allen DJ, Harris JP.

Hum Vaccin Immunother. 2017 Nov 2;13(11):2630-2636. doi: 10.1080/21645515.2017.1360455.


A randomized controlled trial to compare component placement in navigated total knee arthroplasty using original and streamlined registration processes.

Sciberras NC, Almustafa M, Smith BRK, Allen DJ, Picard F, Deakin AH.

Arthroplast Today. 2016 Oct 4;3(2):111-117. doi: 10.1016/j.artd.2016.07.002. eCollection 2017 Jun.


The emerging GII.P16-GII.4 Sydney 2012 norovirus lineage is circulating worldwide, arose by late-2014 and contains polymerase changes that may increase virus transmission.

Ruis C, Roy S, Brown JR, Allen DJ, Goldstein RA, Breuer J.

PLoS One. 2017 Jun 29;12(6):e0179572. doi: 10.1371/journal.pone.0179572. eCollection 2017.


Human parechovirus cluster in the UK, 8 May-2 August 2016-sequence analysis.

Holmes CW, Rahman S, Allen DJ, Bandi S, Tang JW.

J Clin Virol. 2017 Aug;93:37-39. doi: 10.1016/j.jcv.2017.05.018. Epub 2017 Jun 3. No abstract available.


Computer Navigation Helps Reduce the Incidence of Noise After Ceramic-on-Ceramic Total Hip Arthroplasty.

Shah SM, Deep K, Siramanakul C, Mahajan V, Picard F, Allen DJ.

J Arthroplasty. 2017 Sep;32(9):2783-2787. doi: 10.1016/j.arth.2017.04.019. Epub 2017 Apr 21.


The emergence of enterovirus D68 in England in autumn 2014 and the necessity for reinforcing enterovirus respiratory screening.

Carrion Martin AI, Pebody RG, Danis K, Ellis J, Niazi S, DE Lusignan S, Brown KE, Zambon M, Allen DJ.

Epidemiol Infect. 2017 Jul;145(9):1855-1864. doi: 10.1017/S0950268817000590. Epub 2017 Apr 3.


Total Hip Arthroplasty Improves Pain and Function but Not Physical Activity.

Jeldi AJ, Deakin AH, Allen DJ, Granat MH, Grant M, Stansfield BW.

J Arthroplasty. 2017 Jul;32(7):2191-2198. doi: 10.1016/j.arth.2017.02.002. Epub 2017 Feb 10.


An outbreak of norovirus GI-6 infection following a wedding in North West England.

Smith KC, Inns T, Decraene V, Fox A, Allen DJ, Shah A.

Epidemiol Infect. 2017 Apr;145(6):1239-1245. doi: 10.1017/S0950268816003368. Epub 2017 Jan 30.


Isomotive dielectrophoresis for parallel analysis of individual particles.

Allen DJ, Accolla RP, Williams SJ.

Electrophoresis. 2017 Jun;38(11):1441-1449. doi: 10.1002/elps.201600517. Epub 2017 Feb 23.


Mitochondrial Inner Membrane Depolarization as a Marker of Platelet Apoptosis : Disclosure of Nonapoptotic Membrane Depolarization

Gyulkhandanyan AV, Allen DJ, Mykhaylov S, Lyubimov E, Ni H, Freedman J, Leytin V.

Clin Appl Thromb Hemost. 2017 Mar;23(2):139-147. doi: 10.1177/1076029616665924. Epub 2016 Sep 24.


Predominance of enterovirus B and echovirus 30 as cause of viral meningitis in a UK population.

Holmes CW, Koo SS, Osman H, Wilson S, Xerry J, Gallimore CI, Allen DJ, Tang JW.

J Clin Virol. 2016 Aug;81:90-3. doi: 10.1016/j.jcv.2016.06.007. Epub 2016 Jun 16.


Antibodies against Lewis antigens inhibit the binding of human norovirus GII.4 virus-like particles to saliva but not to intestinal Caco-2 cells.

Carmona-Vicente N, Allen DJ, Rodríguez-Díaz J, Iturriza-Gómara M, Buesa J.

Virol J. 2016 May 21;13:82. doi: 10.1186/s12985-016-0538-y.


Early Detection of Epidemic GII-4 Norovirus Strains in UK and Malawi: Role of Surveillance of Sporadic Acute Gastroenteritis in Anticipating Global Epidemics.

Allen DJ, Trainor E, Callaghan A, O'Brien SJ, Cunliffe NA, Iturriza-Gómara M.

PLoS One. 2016 Apr 26;11(4):e0146972. doi: 10.1371/journal.pone.0146972. eCollection 2016.



Allen DJ, Heisler H, Mooney J, Kring R.

Int J Sports Phys Ther. 2016 Feb;11(1):54-63.


Early impact of rotavirus vaccination in a large paediatric hospital in the UK.

Hungerford D, Read JM, Cooke RP, Vivancos R, Iturriza-Gómara M, Allen DJ, French N, Cunliffe N.

J Hosp Infect. 2016 Jun;93(2):117-20. doi: 10.1016/j.jhin.2015.12.010. Epub 2015 Dec 31.


Upright Time and Sit-To-Stand Transition Progression After Total Hip Arthroplasty: An Inhospital Longitudinal Study.

Jeldi AJ, Grant M, Allen DJ, Deakin AH, McDonald DA, Stansfield BW.

J Arthroplasty. 2016 Mar;31(3):735-9. doi: 10.1016/j.arth.2015.09.024. Epub 2015 Sep 26.


Rapid Declines in Age Group-Specific Rotavirus Infection and Acute Gastroenteritis Among Vaccinated and Unvaccinated Individuals Within 1 Year of Rotavirus Vaccine Introduction in England and Wales.

Atchison CJ, Stowe J, Andrews N, Collins S, Allen DJ, Nawaz S, Brown D, Ramsay ME, Ladhani SN.

J Infect Dis. 2016 Jan 15;213(2):243-9. doi: 10.1093/infdis/jiv398. Epub 2015 Jul 30.


Dead shrimp blues: a global assessment of extinction risk in freshwater shrimps (Crustacea: Decapoda: Caridea).

De Grave S, Smith KG, Adeler NA, Allen DJ, Alvarez F, Anker A, Cai Y, Carrizo SF, Klotz W, Mantelatto FL, Page TJ, Shy JY, Villalobos JL, Wowor D.

PLoS One. 2015 Mar 25;10(3):e0120198. doi: 10.1371/journal.pone.0120198. eCollection 2015.


Emergence of the GII-4 Norovirus Sydney2012 strain in England, winter 2012-2013.

Allen DJ, Adams NL, Aladin F, Harris JP, Brown DW.

PLoS One. 2014 Feb 13;9(2):e88978. doi: 10.1371/journal.pone.0088978. eCollection 2014.


BH3-mimetic ABT-737 induces strong mitochondrial membrane depolarization in platelets but only weakly stimulates apoptotic morphological changes, platelet shrinkage and microparticle formation.

Gyulkhandanyan AV, Mutlu A, Allen DJ, Freedman J, Leytin V.

Thromb Res. 2014 Jan;133(1):73-9. doi: 10.1016/j.thromres.2013.10.041. Epub 2013 Nov 6.


The development of Web-based surveillance provides new insights into the burden of norovirus outbreaks in hospitals in England.

Harris JP, Adams NL, Lopman BA, Allen DJ, Adak GK.

Epidemiol Infect. 2014 Aug;142(8):1590-8. doi: 10.1017/S0950268813002896. Epub 2013 Nov 14.


Low-tilt monophasic and biphasic waveforms compared with standard biphasic waveforms in the transvenous defibrillation of ventricular fibrillation.

Bennett JR, Darragh KM, Walsh SJ, Allen DJ, Scott M, Stevenson M, Adgey JA, Anderson JM, Manoharan G.

Pacing Clin Electrophysiol. 2014 Mar;37(3):279-89. doi: 10.1111/pace.12266. Epub 2013 Sep 16.


The gammaretroviral p12 protein has multiple domains that function during the early stages of replication.

Wight DJ, Boucherit VC, Nader M, Allen DJ, Taylor IA, Bishop KN.

Retrovirology. 2012 Oct 4;9:83. doi: 10.1186/1742-4690-9-83.


Human bocaviruses are not significantly associated with gastroenteritis: results of retesting archive DNA from a case control study in the UK.

Nawaz S, Allen DJ, Aladin F, Gallimore C, Iturriza-Gómara M.

PLoS One. 2012;7(7):e41346. doi: 10.1371/journal.pone.0041346. Epub 2012 Jul 24.


Molecular evolution of GII-4 Norovirus strains.

Zakikhany K, Allen DJ, Brown D, Iturriza-Gómara M.

PLoS One. 2012;7(7):e41625. doi: 10.1371/journal.pone.0041625. Epub 2012 Jul 26.


MHV-68 producing mIFNα1 is severely attenuated in vivo and effectively protects mice against challenge with wt MHV-68.

Aricò E, Monque DM, D'Agostino G, Moschella F, Venditti M, Kalinke U, Allen DJ, Stewart JP, Nash AA, Belardelli F, Ferrantini M.

Vaccine. 2011 May 23;29(23):3935-44. doi: 10.1016/j.vaccine.2011.03.092. Epub 2011 Apr 8. Erratum in: Vaccine. 2012 Apr 26;30(20):3145. Stewart, James P [added].


Norovirus in the hospital setting: virus introduction and spread within the hospital environment.

Morter S, Bennet G, Fish J, Richards J, Allen DJ, Nawaz S, Iturriza-Gómara M, Brolly S, Gray J.

J Hosp Infect. 2011 Feb;77(2):106-12. doi: 10.1016/j.jhin.2010.09.035. Epub 2010 Dec 16.


The impact of conservation on the status of the world's vertebrates.

Hoffmann M, Hilton-Taylor C, Angulo A, Böhm M, Brooks TM, Butchart SH, Carpenter KE, Chanson J, Collen B, Cox NA, Darwall WR, Dulvy NK, Harrison LR, Katariya V, Pollock CM, Quader S, Richman NI, Rodrigues AS, Tognelli MF, Vié JC, Aguiar JM, Allen DJ, Allen GR, Amori G, Ananjeva NB, Andreone F, Andrew P, Aquino Ortiz AL, Baillie JE, Baldi R, Bell BD, Biju SD, Bird JP, Black-Decima P, Blanc JJ, Bolaños F, Bolivar-G W, Burfield IJ, Burton JA, Capper DR, Castro F, Catullo G, Cavanagh RD, Channing A, Chao NL, Chenery AM, Chiozza F, Clausnitzer V, Collar NJ, Collett LC, Collette BB, Cortez Fernandez CF, Craig MT, Crosby MJ, Cumberlidge N, Cuttelod A, Derocher AE, Diesmos AC, Donaldson JS, Duckworth JW, Dutson G, Dutta SK, Emslie RH, Farjon A, Fowler S, Freyhof J, Garshelis DL, Gerlach J, Gower DJ, Grant TD, Hammerson GA, Harris RB, Heaney LR, Hedges SB, Hero JM, Hughes B, Hussain SA, Icochea M J, Inger RF, Ishii N, Iskandar DT, Jenkins RK, Kaneko Y, Kottelat M, Kovacs KM, Kuzmin SL, La Marca E, Lamoreux JF, Lau MW, Lavilla EO, Leus K, Lewison RL, Lichtenstein G, Livingstone SR, Lukoschek V, Mallon DP, McGowan PJ, McIvor A, Moehlman PD, Molur S, Muñoz Alonso A, Musick JA, Nowell K, Nussbaum RA, Olech W, Orlov NL, Papenfuss TJ, Parra-Olea G, Perrin WF, Polidoro BA, Pourkazemi M, Racey PA, Ragle JS, Ram M, Rathbun G, Reynolds RP, Rhodin AG, Richards SJ, Rodríguez LO, Ron SR, Rondinini C, Rylands AB, Sadovy de Mitcheson Y, Sanciangco JC, Sanders KL, Santos-Barrera G, Schipper J, Self-Sullivan C, Shi Y, Shoemaker A, Short FT, Sillero-Zubiri C, Silvano DL, Smith KG, Smith AT, Snoeks J, Stattersfield AJ, Symes AJ, Taber AB, Talukdar BK, Temple HJ, Timmins R, Tobias JA, Tsytsulina K, Tweddle D, Ubeda C, Valenti SV, van Dijk PP, Veiga LM, Veloso A, Wege DC, Wilkinson M, Williamson EA, Xie F, Young BE, Akçakaya HR, Bennun L, Blackburn TM, Boitani L, Dublin HT, da Fonseca GA, Gascon C, Lacher TE Jr, Mace GM, Mainka SA, McNeely JA, Mittermeier RA, Reid GM, Rodriguez JP, Rosenberg AA, Samways MJ, Smart J, Stein BA, Stuart SN.

Science. 2010 Dec 10;330(6010):1503-9. doi: 10.1126/science.1194442. Epub 2010 Oct 26.


Percutaneous urinary drainage and ureteric stenting in malignant disease.

Allen DJ, Longhorn SE, Philp T, Smith RD, Choong S.

Clin Oncol (R Coll Radiol). 2010 Nov;22(9):733-9. doi: 10.1016/j.clon.2010.07.004. Epub 2010 Aug 21. Review.


Sequestering CO(2) by mineral carbonation: stability against acid rain exposure.

Allen DJ, Brent GF.

Environ Sci Technol. 2010 Apr 1;44(7):2735-9. doi: 10.1021/es903212j.


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