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Items: 1 to 50 of 91

1.

Draft Genome Sequence of Rhodococcus sp. Strain NCIMB 12038, a Naphthalene-Degrading Bacterium.

Dandare SU, Skvortsov T, Arkhipova K, Allen CCR.

Genome Announc. 2018 Jan 4;6(1). pii: e01420-17. doi: 10.1128/genomeA.01420-17.

2.

Draft Genome Sequences of Pseudomonas putida UV4 and UV4/95, Toluene Dioxygenase-Expressing Producers of cis-1,2-Dihydrodiols.

Skvortsov T, Hoering P, Arkhipova K, Whitehead RC, Boyd DR, Allen CCR.

Genome Announc. 2018 Jan 4;6(1). pii: e01419-17. doi: 10.1128/genomeA.01419-17.

3.

Draft Genome Sequence of the Predatory Marine Bacterium Halobacteriovorax sp. Strain JY17.

Young JM, Skvortsov T, Arkhipova K, Allen CCR.

Genome Announc. 2018 Jan 4;6(1). pii: e01416-17. doi: 10.1128/genomeA.01416-17.

4.

Application of ω-Transaminases in the Pharmaceutical Industry.

Kelly SA, Pohle S, Wharry S, Mix S, Allen CCR, Moody TS, Gilmore BF.

Chem Rev. 2018 Jan 10;118(1):349-367. doi: 10.1021/acs.chemrev.7b00437. Epub 2017 Dec 18.

PMID:
29251912
5.

Raman Deuterium Isotope Probing Reveals Microbial Metabolism at the Single-Cell Level.

Xu J, Zhu D, Ibrahim AD, Allen CCR, Gibson CM, Fowler PW, Song Y, Huang WE.

Anal Chem. 2017 Dec 19;89(24):13305-13312. doi: 10.1021/acs.analchem.7b03461. Epub 2017 Nov 28.

PMID:
29135226
6.

Temporal dynamics of uncultured viruses: a new dimension in viral diversity.

Arkhipova K, Skvortsov T, Quinn JP, McGrath JW, Allen CC, Dutilh BE, McElarney Y, Kulakov LA.

ISME J. 2018 Jan;12(1):199-211. doi: 10.1038/ismej.2017.157. Epub 2017 Oct 13.

PMID:
29027998
7.

Enantiopurity and absolute configuration determination of arene cis-dihydrodiol metabolites and derivatives using chiral boronic acids.

Boyd DR, Sharma ND, Goodrich PA, Malone JF, McConville G, Harrison JS, Stevenson PJ, Allen CCR.

Chirality. 2018 Jan;30(1):5-18. doi: 10.1002/chir.22764. Epub 2017 Oct 11.

PMID:
29024058
8.

Neonatal Enterovirus Myocarditis With Severe Dystrophic Calcification: Novel Treatment With Pocapavir.

Wittekind SG, Allen CC, Jefferies JL, Rattan MS, Madueme PC, Taylor BN, Moore RA.

J Investig Med High Impact Case Rep. 2017 Sep 14;5(3):2324709617729393. doi: 10.1177/2324709617729393. eCollection 2017 Jul-Sep.

9.

Pf16 and phiPMW: Expanding the realm of Pseudomonas putida bacteriophages.

Magill DJ, Krylov VN, Shaburova OV, McGrath JW, Allen CCR, Quinn JP, Kulakov LA.

PLoS One. 2017 Sep 6;12(9):e0184307. doi: 10.1371/journal.pone.0184307. eCollection 2017.

10.

Interaction of dietary energy source and body weight gain during the juvenile period on metabolic endocrine status and age at puberty in beef heifers.

Allen CC, Tedeschi LO, Keisler DH, Cardoso RC, Alves BRC, Amstalden M, Williams GL.

J Anim Sci. 2017 May;95(5):2080-2088. doi: 10.2527/jas.2016.1002.

PMID:
28727020
11.

Large perturbations in CO2 flux and subsequent chemosynthesis are induced in agricultural soil by the addition of elemental sulfur.

Kelleher BP, Flanagan PV, Hart KM, Simpson AJ, Oppenheimer SF, Murphy BT, O'Reilly SS, Jordan SF, Grey A, Ibrahim A, Allen CCR.

Sci Rep. 2017 Jul 5;7(1):4732. doi: 10.1038/s41598-017-04934-9.

12.

Revealing the global importance of isoprene metabolism by marine bacteria.

Allen CCR.

Environ Microbiol. 2017 Sep;19(9):3413-3414. doi: 10.1111/1462-2920.13832. Epub 2017 Jul 17. No abstract available.

PMID:
28631357
13.

The occurrence of PAHs and faecal sterols in Dublin Bay and their influence on sedimentary microbial communities.

Murphy BT, O'Reilly SS, Monteys X, Reid BF, Szpak MT, McCaul MV, Jordan SF, Allen CC, Kelleher BP.

Mar Pollut Bull. 2016 May 15;106(1-2):215-24. doi: 10.1016/j.marpolbul.2016.02.066. Epub 2016 Mar 5.

PMID:
26961173
14.

Metagenomic Characterisation of the Viral Community of Lough Neagh, the Largest Freshwater Lake in Ireland.

Skvortsov T, de Leeuwe C, Quinn JP, McGrath JW, Allen CC, McElarney Y, Watson C, Arkhipova K, Lavigne R, Kulakov LA.

PLoS One. 2016 Feb 29;11(2):e0150361. doi: 10.1371/journal.pone.0150361. eCollection 2016.

15.

Chemoenzymatic synthesis of enantiopure hydroxy sulfoxides derived from substituted arenes.

Boyd DR, Sharma ND, Malone JF, Ljubez V, Murphy D, Shepherd SD, Allen CC.

Org Biomol Chem. 2016 Mar 7;14(9):2651-64. doi: 10.1039/c5ob02411k.

PMID:
26907786
16.

Gastroenterology 2020: No Time for WIMPs.

Allen JI, Allen CC, Brill JV.

Gastroenterology. 2016 Feb;150(2):295-9. doi: 10.1053/j.gastro.2015.12.014. Epub 2015 Dec 18. No abstract available.

PMID:
26709033
17.

Strategies for thromboprophylaxis in Fontan circulation: a meta-analysis.

Alsaied T, Alsidawi S, Allen CC, Faircloth J, Palumbo JS, Veldtman GR.

Heart. 2015 Nov;101(21):1731-7. doi: 10.1136/heartjnl-2015-307930. Epub 2015 Aug 28.

PMID:
26319122
18.

Toluene dioxygenase-catalyzed synthesis and reactions of cis-diol metabolites derived from 2- and 3-methoxyphenols.

Boyd DR, Sharma ND, Malone JF, McIntyre PB, McRoberts C, Floyd S, Allen CC, Gohil A, Coles SJ, Horton PN, Stevenson PJ.

J Org Chem. 2015 Apr 3;80(7):3429-39. doi: 10.1021/jo5028968. Epub 2015 Mar 23.

PMID:
25756661
19.

Pharmacologic application of native GnRH in the winter anovulatory mare, I: frequency of reversion to the anovulatory state following ovulation induction and cessation of treatment.

Thorson JF, Allen CC, Amstalden M, Williams GL.

Theriogenology. 2014 Mar 1;81(4):579-86. doi: 10.1016/j.theriogenology.2013.11.018. Epub 2013 Dec 8.

PMID:
24411221
20.

Pharmacologic application of native GnRH in the winter anovulatory mare, II: accelerating the timing of pregnancy.

Thorson JF, Prezotto LD, Cardoso RC, Allen CC, Alves BR, Amstalden M, Williams GL.

Theriogenology. 2014 Mar 1;81(4):625-31. doi: 10.1016/j.theriogenology.2013.11.017. Epub 2013 Dec 8.

PMID:
24388674
21.

An unusual defibrillator lead-associated echodensity.

Mendenhall GS, Barrington W, Allen CC, Voigt AH.

Heart Rhythm. 2014 Jul;11(7):1262-3. doi: 10.1016/j.hrthm.2013.09.054. Epub 2013 Sep 19. No abstract available.

PMID:
24055944
22.

Effects of fertility on gene expression and function of the bovine endometrium.

Minten MA, Bilby TR, Bruno RG, Allen CC, Madsen CA, Wang Z, Sawyer JE, Tibary A, Neibergs HL, Geary TW, Bauersachs S, Spencer TE.

PLoS One. 2013 Aug 5;8(8):e69444. doi: 10.1371/journal.pone.0069444. Print 2013.

23.

Tracking the fate of microbially sequestered carbon dioxide in soil organic matter.

Hart KM, Kulakova AN, Allen CC, Simpson AJ, Oppenheimer SF, Masoom H, Courtier-Murias D, Soong R, Kulakov LA, Flanagan PV, Murphy BT, Kelleher BP.

Environ Sci Technol. 2013 May 21;47(10):5128-37. doi: 10.1021/es3050696. Epub 2013 May 7.

PMID:
23611116
24.

Chemoenzymatic synthesis of monocyclic arene oxides and arene hydrates from substituted benzene substrates.

Boyd DR, Sharma ND, Ljubez V, McGeehin PK, Stevenson PJ, Blain M, Allen CC.

Org Biomol Chem. 2013 May 14;11(18):3020-9. doi: 10.1039/c3ob40166a.

PMID:
23532167
25.

Toluene dioxygenase-catalyzed cis-dihydroxylation of benzo[b]thiophenes and benzo[b]furans: synthesis of benzo[b]thiophene 2,3-oxide.

Boyd DR, Sharma ND, Brannigan IN, Evans TA, Haughey SA, McMurray BT, Malone JF, McIntyre PB, Stevenson PJ, Allen CC.

Org Biomol Chem. 2012 Sep 28;10(36):7292-304. doi: 10.1039/c2ob26120k.

PMID:
22878622
26.

Strain background influences neurotoxicity and behavioral abnormalities in mice expressing the tetracycline transactivator.

Han HJ, Allen CC, Buchovecky CM, Yetman MJ, Born HA, Marin MA, Rodgers SP, Song BJ, Lu HC, Justice MJ, Probst FJ, Jankowsky JL.

J Neurosci. 2012 Aug 1;32(31):10574-86. doi: 10.1523/JNEUROSCI.0893-12.2012.

27.

Giant polygons and mounds in the lowlands of Mars: signatures of an ancient ocean?

Oehler DZ, Allen CC.

Astrobiology. 2012 Jun;12(6):601-15. doi: 10.1089/ast.2011.0803. Epub 2012 Jun 25.

PMID:
22731685
28.

Structure, stereochemistry and synthesis of enantiopure cyclohexenone cis-diol bacterial metabolites derived from phenols.

Boyd DR, Sharma ND, Malone JF, McIntyre PB, Stevenson PJ, Allen CC, Kwit M, Gawronski J.

Org Biomol Chem. 2012 Aug 14;10(30):6217-29. doi: 10.1039/c2ob25079a. Epub 2012 Mar 19.

PMID:
22426838
29.

Chemoenzymatic formal synthesis of (-)- and (+)-epibatidine.

Boyd DR, Sharma ND, Kaik M, McIntyre PB, Stevenson PJ, Allen CC.

Org Biomol Chem. 2012 Apr 14;10(14):2774-9. doi: 10.1039/c2ob06904k. Epub 2012 Feb 27.

PMID:
22367429
30.

Gene expression in the arcuate nucleus of heifers is affected by controlled intake of high- and low-concentrate diets.

Allen CC, Alves BR, Li X, Tedeschi LO, Zhou H, Paschal JC, Riggs PK, Braga-Neto UM, Keisler DH, Williams GL, Amstalden M.

J Anim Sci. 2012 Jul;90(7):2222-32. doi: 10.2527/jas.2011-4684. Epub 2012 Jan 20.

PMID:
22266992
31.

Chemoenzymatic synthesis of a mixed phosphine-phosphine oxide catalyst and its application to asymmetric allylation of aldehydes and hydrogenation of alkenes.

Boyd DR, Bell M, Dunne KS, Kelly B, Stevenson PJ, Malone JF, Allen CC.

Org Biomol Chem. 2012 Feb 21;10(7):1388-95. doi: 10.1039/c1ob06599h. Epub 2012 Jan 4.

PMID:
22218455
32.

Bacterial dioxygenase- and monooxygenase-catalysed sulfoxidation of benzo[b]thiophenes.

Boyd DR, Sharma ND, McMurray B, Haughey SA, Allen CC, Hamilton JT, McRoberts WC, O'Ferrall RA, Nikodinovic-Runic J, Coulombel LA, O'Connor KE.

Org Biomol Chem. 2012 Jan 28;10(4):782-90. doi: 10.1039/c1ob06678a. Epub 2011 Dec 1.

PMID:
22134441
33.

Integrated transcriptomic and proteomic profiling of white spruce stems during the transition from active growth to dormancy.

Galindo González LM, El Kayal W, Ju CJ, Allen CC, King-Jones S, Cooke JE.

Plant Cell Environ. 2012 Apr;35(4):682-701. doi: 10.1111/j.1365-3040.2011.02444.x. Epub 2011 Nov 8.

34.

Extent and variation of phage-borne bacterial 16S rRNA gene sequences in wastewater environments.

Del Casale A, Flanagan PV, Larkin MJ, Allen CC, Kulakov LA.

Appl Environ Microbiol. 2011 Aug;77(15):5529-32. doi: 10.1128/AEM.00457-11. Epub 2011 Jun 10.

35.

A bacterial enrichment study and overview of the extractable lipids from paleosols in the Dry Valleys, Antarctica: implications for future Mars reconnaissance.

Hart KM, Szpak MT, Mahaney WC, Dohm JM, Jordan SF, Frazer AR, Allen CC, Kelleher BP.

Astrobiology. 2011 May;11(4):303-21. doi: 10.1089/ast.2010.0583. Epub 2011 May 5.

PMID:
21545270
36.

Analysis of transduction in wastewater bacterial populations by targeting the phage-derived 16S rRNA gene sequences.

Del Casale A, Flanagan PV, Larkin MJ, Allen CC, Kulakov LA.

FEMS Microbiol Ecol. 2011 Apr;76(1):100-8. doi: 10.1111/j.1574-6941.2010.01034.x. Epub 2011 Jan 19.

37.

Dioxygenase-catalysed cis-dihydroxylation of meta-substituted phenols to yield cyclohexenone cis-diol and derived enantiopure cis-triol metabolites.

Boyd DR, Sharma ND, Stevenson PJ, Blain M, McRoberts C, Hamilton JT, Argudo JM, Mundi H, Kulakov LA, Allen CC.

Org Biomol Chem. 2011 Mar 7;9(5):1479-90. doi: 10.1039/c0ob00894j. Epub 2011 Jan 11.

PMID:
21221457
38.

Molecular events of apical bud formation in white spruce, Picea glauca.

El Kayal W, Allen CC, Ju CJ, Adams E, King-Jones S, Zaharia LI, Abrams SR, Cooke JE.

Plant Cell Environ. 2011 Mar;34(3):480-500. doi: 10.1111/j.1365-3040.2010.02257.x. Epub 2011 Jan 7.

39.

Diviner Lunar Radiometer observations of cold traps in the Moon's south polar region.

Paige DA, Siegler MA, Zhang JA, Hayne PO, Foote EJ, Bennett KA, Vasavada AR, Greenhagen BT, Schofield JT, McCleese DJ, Foote MC, DeJong E, Bills BG, Hartford W, Murray BC, Allen CC, Snook K, Soderblom LA, Calcutt S, Taylor FW, Bowles NE, Bandfield JL, Elphic R, Ghent R, Glotch TD, Wyatt MB, Lucey PG.

Science. 2010 Oct 22;330(6003):479-82. doi: 10.1126/science.1187726.

40.

Highly silicic compositions on the Moon.

Glotch TD, Lucey PG, Bandfield JL, Greenhagen BT, Thomas IR, Elphic RC, Bowles N, Wyatt MB, Allen CC, Donaldson Hanna K, Paige DA.

Science. 2010 Sep 17;329(5998):1510-3. doi: 10.1126/science.1192148.

41.

Global silicate mineralogy of the Moon from the Diviner lunar radiometer.

Greenhagen BT, Lucey PG, Wyatt MB, Glotch TD, Allen CC, Arnold JA, Bandfield JL, Bowles NE, Donaldson Hanna KL, Hayne PO, Song E, Thomas IR, Paige DA.

Science. 2010 Sep 17;329(5998):1507-9. doi: 10.1126/science.1192196.

42.

Chemoenzymatic synthesis of carbasugars (+)-pericosines A-C from diverse aromatic cis-dihydrodiol precursors.

Boyd DR, Sharma ND, Acaru CA, Malone JF, O'Dowd CR, Allen CC, Stevenson PJ.

Org Lett. 2010 May 21;12(10):2206-9. doi: 10.1021/ol100525r.

PMID:
20411952
43.

Chemoenzymatic synthesis of the carbasugars carba-beta-L-galactopyranose, carba-beta-L-talopyranose and carba-alpha-L-talopyranose from methyl benzoate.

Boyd DR, Sharma ND, Bowers NI, Coen GB, Malone JF, O'Dowd CR, Stevenson PJ, Allen CC.

Org Biomol Chem. 2010 Mar 21;8(6):1415-23. doi: 10.1039/b921545j. Epub 2010 Jan 21.

PMID:
20204216
44.

Chemoenzymatic synthesis of chiral 2,2'-bipyridine ligands and their N-oxide derivatives: applications in the asymmetric aminolysis of epoxides and asymmetric allylation of aldehydes.

Boyd DR, Sharma ND, Sbircea L, Murphy D, Malone JF, James SL, Allen CC, Hamilton JT.

Org Biomol Chem. 2010 Mar 7;8(5):1081-90. doi: 10.1039/b919894f. Epub 2010 Jan 5.

PMID:
20165798
45.

Planning considerations for a Mars Sample Receiving Facility: summary and interpretation of three design studies.

Beaty DW, Allen CC, Bass DS, Buxbaum KL, Campbell JK, Lindstrom DJ, Miller SL, Papanastassiou DA.

Astrobiology. 2009 Oct;9(8):745-58. doi: 10.1089/ast.2009.0339.

PMID:
19845446
46.

Genomes of "phiKMV-like viruses" of Pseudomonas aeruginosa contain localized single-strand interruptions.

Kulakov LA, Ksenzenko VN, Shlyapnikov MG, Kochetkov VV, Del Casale A, Allen CC, Larkin MJ, Ceyssens PJ, Lavigne R.

Virology. 2009 Aug 15;391(1):1-4. doi: 10.1016/j.virol.2009.06.024. Epub 2009 Jul 9.

47.

New families of enantiopure cyclohexenone cis-diol, o-quinol dimer and hydrate metabolites from dioxygenase-catalysed dihydroxylation of phenols.

Boyd DR, Sharma ND, Malone JF, Allen CC.

Chem Commun (Camb). 2009 Jun 28;(24):3633-5. doi: 10.1039/b905940g. Epub 2009 May 13.

PMID:
19521632
48.

A case for ancient springs in Arabia Terra, Mars.

Allen CC, Oehler DZ.

Astrobiology. 2008 Dec;8(6):1093-1112. doi: 10.1089/ast.2008.0239.

PMID:
19093802
49.

Azaarene cis-dihydrodiol-derived 2,2'-bipyridine ligands for asymmetric allylic oxidation and cyclopropanation.

Boyd DR, Sharma ND, Sbircea L, Murphy D, Belhocine T, Malone JF, James SL, Allen CC, Hamilton JT.

Chem Commun (Camb). 2008 Nov 21;(43):5535-7. doi: 10.1039/b814678k. Epub 2008 Oct 9.

PMID:
18997943
50.

Regioselectivity and stereoselectivity of dioxygenase catalysed cis-dihydroxylation of mono- and tri-cyclic azaarene substrates.

Boyd DR, Sharma ND, Coen GP, Hempenstall F, Ljubez V, Malone JF, Allen CC, Hamilton JT.

Org Biomol Chem. 2008 Nov 7;6(21):3957-66. doi: 10.1039/b810235j. Epub 2008 Sep 5.

PMID:
18931802

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