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Items: 1 to 50 of 727

1.

Genomic Profiling of T-Cell Neoplasms Reveals Frequent JAK1 and JAK3 Mutations With Clonal Evasion From Targeted Therapies.

Greenplate A, Wang K, Tripathi RM, Palma N, Ali SM, Stephens PJ, Miller VA, Shyr Y, Guo Y, Reddy NM, Kozhaya L, Unutmaz D, Chen X, Irish JM, Davé UP.

JCO Precis Oncol. 2018;2018. doi: 10.1200/PO.17.00019. Epub 2018 Feb 13.

PMID:
30079384
2.

Genomic Characterization of Testicular Germ Cell Tumors Relapsing After Chemotherapy.

Necchi A, Bratslavsky G, Corona RJ, Chung JH, Millis SZ, Elvin JA, Vergilio JA, Suh J, Ramkissoon S, Severson E, Daniel S, Killian JK, Ali SM, Schrock AB, Reddy P, Miller VA, Welsh A, Gay LM, Ross JS.

Eur Urol Focus. 2018 Jul 16. pii: S2405-4569(18)30179-2. doi: 10.1016/j.euf.2018.07.013. [Epub ahead of print]

PMID:
30025711
3.

In Vitro Cytotoxicity and Morphological Assessments of GO-ZnO against the MCF-7 Cells: Determination of Singlet Oxygen by Chemical Trapping.

Shaheen F, Aziz MH, Fatima M, Khan MA, Ahmed F, Ahmad R, Ahmad MA, Alkhuraiji TS, Akram MW, Raza R, Ali SM.

Nanomaterials (Basel). 2018 Jul 18;8(7). pii: E539. doi: 10.3390/nano8070539.

4.

Impact of Clinical Information on the Turnaround Time in Surgical Histopathology: A Retrospective Study.

Ali SMH, Kathia UM, Gondal MUM, Zil-E-Ali A, Khan H, Riaz S.

Cureus. 2018 May 8;10(5):e2596. doi: 10.7759/cureus.2596.

5.

Communicating, consulting, and caring differently.

Pope RM, Ali SM, Muir CD, Schulte AA.

BMJ. 2018 Jul 13;362:k3103. doi: 10.1136/bmj.k3103. No abstract available.

PMID:
30006477
6.

Antimicrobial discovery from natural and unusual sources.

Ali SM, Siddiqui R, Khan NA.

J Pharm Pharmacol. 2018 Jul 12. doi: 10.1111/jphp.12976. [Epub ahead of print] Review.

PMID:
30003546
7.

Diverse EGFR Exon 20 Insertions and Co-Occurring Molecular Alterations Identified by Comprehensive Genomic Profiling of Non-Small Cell Lung Cancer.

Riess JW, Gandara DR, Frampton GM, Madison R, Peled N, Bufill JA, Dy G, Ignatius Ou SH, Stephens PJ, McPherson J, Lara PN, Burich RA, Ross JS, Miller VA, Ali SM, Mack PC, Schrock AB.

J Thorac Oncol. 2018 Jul 5. pii: S1556-0864(18)30770-6. doi: 10.1016/j.jtho.2018.06.019. [Epub ahead of print]

PMID:
29981927
8.

Analytical Validation of a Hybrid Capture-Based Next-Generation Sequencing Clinical Assay for Genomic Profiling of Cell-Free Circulating Tumor DNA.

Clark TA, Chung JH, Kennedy M, Hughes JD, Chennagiri N, Lieber DS, Fendler B, Young L, Zhao M, Coyne M, Breese V, Young G, Donahue A, Pavlick D, Tsiros A, Brennan T, Zhong S, Mughal T, Bailey M, He J, Roels S, Frampton GM, Spoerke JM, Gendreau S, Lackner M, Schleifman E, Peters E, Ross JS, Ali SM, Miller VA, Gregg JP, Stephens PJ, Welsh A, Otto GA, Lipson D.

J Mol Diagn. 2018 Jun 22. pii: S1525-1578(17)30527-5. doi: 10.1016/j.jmoldx.2018.05.004. [Epub ahead of print]

9.

WAC/RET: A Novel RET Oncogenic Fusion Variant in Non-Small Cell Lung Carcinoma.

Velcheti V, Madison R, Ali SM, Schrock AB.

J Thorac Oncol. 2018 Jul;13(7):e122-e123. doi: 10.1016/j.jtho.2018.03.003. No abstract available.

PMID:
29935851
10.

High turnover of extracellular matrix reflected by specific protein fragments measured in serum is associated with poor outcomes in two metastatic breast cancer cohorts.

Lipton A, Leitzel K, Ali SM, Polimera HV, Nagabhairu V, Marks E, Richardson AE, Krecko L, Ali A, Koestler W, Esteva FJ, Leeming DJ, Karsdal MA, Willumsen N.

Int J Cancer. 2018 Jun 20. doi: 10.1002/ijc.31627. [Epub ahead of print]

PMID:
29923614
11.

Clinicopathologic Features of a Series of Primary Renal CIC-rearranged Sarcomas With Comprehensive Molecular Analysis.

Mangray S, Kelly DR, LeGuellec S, Fridman E, Aggarwal S, Shago M, Matoso A, Madison R, Pramanik S, Zhong S, Li R, Lombardo KA, Cramer S, Pressey J, Ross JS, Corona RJ, Bratslavsky G, Argani P, Coindre JM, Somers GR, Ali SM, Yakirevich E.

Am J Surg Pathol. 2018 Jun 12. doi: 10.1097/PAS.0000000000001098. [Epub ahead of print]

PMID:
29901569
12.

Gallbladder volvulus with segmental right liver lobe hypoplasia/atrophy: a preoperative diagnostic dilemma.

Musthafa S, Aftab Z, Ali SM, Khanna M.

BMJ Case Rep. 2018 Jun 8;2018. pii: bcr-2018-224474. doi: 10.1136/bcr-2018-224474.

PMID:
29884666
13.

Receptor Tyrosine Kinase Fusions and BRAF Kinase Fusions are Rare but Actionable Resistance Mechanisms to EGFR Tyrosine Kinase Inhibitors.

Schrock AB, Zhu VW, Hsieh WS, Madison R, Creelan B, Silberberg J, Costin D, Bharne A, Bonta I, Bosemani T, Nikolinakos P, Ross JS, Miller VA, Ali SM, Klempner SJ, Ou SI.

J Thorac Oncol. 2018 Jun 5. pii: S1556-0864(18)30674-9. doi: 10.1016/j.jtho.2018.05.027. [Epub ahead of print]

14.

Diagnostic comparison between FECPAKG2 and the Kato-Katz method for analyzing soil-transmitted helminth eggs in stool.

Moser W, Bärenbold O, Mirams GJ, Cools P, Vlaminck J, Ali SM, Ame SM, Hattendorf J, Vounatsou P, Levecke B, Keiser J.

PLoS Negl Trop Dis. 2018 Jun 4;12(6):e0006562. doi: 10.1371/journal.pntd.0006562. eCollection 2018 Jun.

15.

Efficacy and tolerability of moxidectin alone and in co-administration with albendazole and tribendimidine versus albendazole plus oxantel pamoate against Trichuris trichiura infections: a randomised, non-inferiority, single-blind trial.

Barda B, Ame SM, Ali SM, Albonico M, Puchkov M, Huwyler J, Hattendorf J, Keiser J.

Lancet Infect Dis. 2018 Aug;18(8):864-873. doi: 10.1016/S1473-3099(18)30233-0. Epub 2018 May 29.

PMID:
29858149
16.

Structure, Dynamics, and Adsorption of Charged Guest within the Nanocavity of Polymer-Functionalized Neutral Macrocyclic Host.

Sahu P, Ali SM, Shenoy KT, Mohan S.

ACS Appl Mater Interfaces. 2018 Jun 20;10(24):20968-20982. doi: 10.1021/acsami.8b03874. Epub 2018 Jun 11.

PMID:
29847905
17.

Response to rapamycin analogs but not PD-1 inhibitors in PTEN-mutated metastatic non-small-cell lung cancer with high tumor mutational burden.

Parikh AR, Ali SM, Schrock AB, Albacker LA, Miller VA, Stephens PJ, Crilley P, Markman M.

Lung Cancer (Auckl). 2018 May 18;9:45-47. doi: 10.2147/LCTT.S161738. eCollection 2018.

18.

Curcumin decreases Warburg effect in cancer cells by down-regulating pyruvate kinase M2 via mTOR-HIF1α inhibition.

Siddiqui FA, Prakasam G, Chattopadhyay S, Rehman AU, Padder RA, Ansari MA, Irshad R, Mangalhara K, Bamezai RNK, Husain M, Ali SM, Iqbal MA.

Sci Rep. 2018 May 29;8(1):8323. doi: 10.1038/s41598-018-25524-3.

19.

Climate change and One Health.

Zinsstag J, Crump L, Schelling E, Hattendorf J, Maidane YO, Ali KO, Muhummed A, Umer AA, Aliyi F, Nooh F, Abdikadir MI, Ali SM, Hartinger S, Mäusezahl D, de White MBG, Cordon-Rosales C, Castillo DA, McCracken J, Abakar F, Cercamondi C, Emmenegger S, Maier E, Karanja S, Bolon I, de Castañeda RR, Bonfoh B, Tschopp R, Probst-Hensch N, Cissé G.

FEMS Microbiol Lett. 2018 Jun 1;365(11). doi: 10.1093/femsle/fny085.

20.

Freiburg RNA tools: a central online resource for RNA-focused research and teaching.

Raden M, Ali SM, Alkhnbashi OS, Busch A, Costa F, Davis JA, Eggenhofer F, Gelhausen R, Georg J, Heyne S, Hiller M, Kundu K, Kleinkauf R, Lott SC, Mohamed MM, Mattheis A, Miladi M, Richter AS, Will S, Wolff J, Wright PR, Backofen R.

Nucleic Acids Res. 2018 Jul 2;46(W1):W25-W29. doi: 10.1093/nar/gky329.

21.

STK11/LKB1 Mutations and PD-1 Inhibitor Resistance in KRAS-Mutant Lung Adenocarcinoma.

Skoulidis F, Goldberg ME, Greenawalt DM, Hellmann MD, Awad MM, Gainor JF, Schrock AB, Hartmaier RJ, Trabucco SE, Gay L, Ali SM, Elvin JA, Singal G, Ross JS, Fabrizio D, Szabo PM, Chang H, Sasson A, Srinivasan S, Kirov S, Szustakowski J, Vitazka P, Edwards R, Bufill JA, Sharma N, Ou SI, Peled N, Spigel DR, Rizvi H, Aguilar EJ, Carter BW, Erasmus J, Halpenny DF, Plodkowski AJ, Long NM, Nishino M, Denning WL, Galan-Cobo A, Hamdi H, Hirz T, Tong P, Wang J, Rodriguez-Canales J, Villalobos PA, Parra ER, Kalhor N, Sholl LM, Sauter JL, Jungbluth AA, Mino-Kenudson M, Azimi R, Elamin YY, Zhang J, Leonardi GC, Jiang F, Wong KK, Lee JJ, Papadimitrakopoulou VA, Wistuba II, Miller VA, Frampton GM, Wolchok JD, Shaw AT, Jänne PA, Stephens PJ, Rudin CM, Geese WJ, Albacker LA, Heymach JV.

Cancer Discov. 2018 Jul;8(7):822-835. doi: 10.1158/2159-8290.CD-18-0099. Epub 2018 May 17.

PMID:
29773717
22.

Responses to Alectinib in ALK-rearranged Papillary Renal Cell Carcinoma.

Pal SK, Bergerot P, Dizman N, Bergerot C, Adashek J, Madison R, Chung JH, Ali SM, Jones JO, Salgia R.

Eur Urol. 2018 Jul;74(1):124-128. doi: 10.1016/j.eururo.2018.03.032. No abstract available.

PMID:
29685646
23.

Exceptional response to olaparib in BRCA2-altered urothelial carcinoma after PD-L1 inhibitor and chemotherapy failure.

Necchi A, Raggi D, Giannatempo P, Alessi A, Serafini G, Colecchia M, Ali SM, Chung JH.

Eur J Cancer. 2018 Jun;96:128-130. doi: 10.1016/j.ejca.2018.03.021. Epub 2018 Apr 18. No abstract available.

PMID:
29680362
24.

Targeted genomic landscape of metastases compared to primary tumours in clear cell metastatic renal cell carcinoma.

de Velasco G, Wankowicz SA, Madison R, Ali SM, Norton C, Duquette A, Ross JS, Bossé D, Lalani AA, Miller VA, Stephens PJ, Young L, Hakimi AA, Signoretti S, Pal SK, Choueiri TK.

Br J Cancer. 2018 May;118(9):1238-1242. doi: 10.1038/s41416-018-0064-3. Epub 2018 Apr 20.

PMID:
29674707
25.

Photochemical interaction of ascorbic acid and nicotinamide in aqueous solution: A kinetic study.

Ahmad I, Mobeen MF, Sheraz MA, Ahmed S, Anwar Z, Shaikh RS, Hussain I, Ali SM.

J Photochem Photobiol B. 2018 May;182:115-121. doi: 10.1016/j.jphotobiol.2018.04.011. Epub 2018 Apr 8.

PMID:
29660587
26.

Ultra-Widefield Angiography With Oral Fluorescein in Pediatric Patients With Retinal Disease.

Ali SMA, Khan I, Khurram D, Kozak I.

JAMA Ophthalmol. 2018 May 1;136(5):593-594. doi: 10.1001/jamaophthalmol.2018.0462. No abstract available.

PMID:
29621363
27.

Long-Term Oncologic Outcomes of Minimally Invasive Proctectomy for Rectal Adenocarcinoma.

Merchea A, Ali SM, Kelley SR, Duchalais E, Alabbad JY, Dozois EJ, Larson DW.

J Gastrointest Surg. 2018 Aug;22(8):1412-1417. doi: 10.1007/s11605-018-3751-8. Epub 2018 Mar 28.

PMID:
29594912
28.
29.

Comprehensive genomic profiling aids in treatment of a metastatic endometrial cancer.

Dhami J, Hirshfield KM, Ganesan S, Hellmann M, Rojas V, Amorosa JK, Riedlinger GM, Zhong H, Ali SM, Pavlick D, Elvin JA, Rodriguez-Rodriguez L.

Cold Spring Harb Mol Case Stud. 2018 Apr 2;4(2). pii: a002089. doi: 10.1101/mcs.a002089. Print 2018 Apr.

30.

Molecular Facts on the Structure and Dynamics of Electrolyte Species in Cu-Cl Cycle for Hydrogen Generation: An Insight from Molecular Dynamic Simulations.

Sahu P, Ali SM, Shenoy KT, Mohan S.

J Phys Chem B. 2018 Apr 12;122(14):4115-4130. doi: 10.1021/acs.jpcb.8b01650. Epub 2018 Mar 28.

PMID:
29569915
31.

Occurrence of blaNDM Variants Among Enterobacteriaceae From a Neonatal Intensive Care Unit in a Northern India Hospital.

Ahmad N, Khalid S, Ali SM, Khan AU.

Front Microbiol. 2018 Mar 7;9:407. doi: 10.3389/fmicb.2018.00407. eCollection 2018.

32.

SuPReMe: a rapid reverse genetics method to generate clonal populations of recombinant RNA viruses.

Driouich JS, Ali SM, Amroun A, Aubry F, de Lamballerie X, Nougairède A.

Emerg Microbes Infect. 2018 Mar 21;7(1):40. doi: 10.1038/s41426-018-0040-2.

33.

Anaplastic Lymphoma Kinase Mutation (ALK F1174C) in Small Cell Carcinoma of the Prostate and Molecular Response to Alectinib.

Carneiro BA, Pamarthy S, Shah AN, Sagar V, Unno K, Han H, Yang XJ, Costa RB, Nagy RJ, Lanman RB, Kuzel TM, Ross JS, Gay L, Elvin JA, Ali SM, Cristofanilli M, Chae YK, Giles FJ, Abdulkadir SA.

Clin Cancer Res. 2018 Jun 15;24(12):2732-2739. doi: 10.1158/1078-0432.CCR-18-0332. Epub 2018 Mar 20.

PMID:
29559559
34.

Hybrid Capture-Based Comprehensive Genomic Profiling Identifies Lung Cancer Patients with Well-Characterized Sensitizing Epidermal Growth Factor Receptor Point Mutations That Were Not Detected by Standard of Care Testing.

Suh JH, Schrock AB, Johnson A, Lipson D, Gay LM, Ramkissoon S, Vergilio JA, Elvin JA, Shakir A, Ruehlman P, Reckamp KL, Ou SI, Ross JS, Stephens PJ, Miller VA, Ali SM.

Oncologist. 2018 Jul;23(7):776-781. doi: 10.1634/theoncologist.2017-0493. Epub 2018 Mar 14.

PMID:
29540602
35.

A prolonged response to platinum-based therapy in a patient with metastatic urothelial carcinoma harboring a single rearranged and truncated NF2 gene.

Achkar T, Ali SM, Welsh A, Dhir R, Gollin SM, Parikh RA.

Genes Chromosomes Cancer. 2018 Aug;57(8):430-433. doi: 10.1002/gcc.22537. Epub 2018 Mar 30.

PMID:
29532557
36.

Loss-to-follow-up and delay to treatment initiation in Pakistan's national tuberculosis control programme.

Ali SM, Naureen F, Noor A, Fatima I, Viney K, Ishaq M, Anjum N, Rashid A, Haider GR, Khan MA, Aamir J.

BMC Public Health. 2018 Mar 9;18(1):335. doi: 10.1186/s12889-018-5222-2.

37.

EGFR-RAD51 Fusion: A Targetable Partnership Originated from the Tumor Evolution?

Raez LE, Pinto JA, Schrock AB, Ali SM.

J Thorac Oncol. 2018 Mar;13(3):e33-e34. doi: 10.1016/j.jtho.2017.10.005. No abstract available.

PMID:
29472054
38.
39.

Mildly Elevated Liver Transaminase Levels: Causes and Evaluation.

Oh RC, Hustead TR, Ali SM, Pantsari MW.

Am Fam Physician. 2017 Dec 1;96(11):709-715.

PMID:
29431403
40.

Tumor Mutational Burden Guides Therapy in a Treatment Refractory POLE-Mutant Uterine Carcinosarcoma.

Bhangoo MS, Boasberg P, Mehta P, Elvin JA, Ali SM, Wu W, Klempner SJ.

Oncologist. 2018 May;23(5):518-523. doi: 10.1634/theoncologist.2017-0342. Epub 2018 Jan 31.

PMID:
29386312
41.

Alkali Metal Ion Partitioning with Calix[4]arene-benzo-crown-6 Ionophore in Acidic Medium: Insights from Experiments, Statistical Mechanical Framework, and Molecular Dynamics Simulations.

Biswas R, Malviya A, Banerjee T, Ghosh P, Ali SM.

J Phys Chem B. 2018 Feb 22;122(7):2102-2112. doi: 10.1021/acs.jpcb.7b10632. Epub 2018 Feb 13.

PMID:
29384674
42.

Impact of EML4-ALK Variant on Resistance Mechanisms and Clinical Outcomes in ALK-Positive Lung Cancer.

Lin JJ, Zhu VW, Yoda S, Yeap BY, Schrock AB, Dagogo-Jack I, Jessop NA, Jiang GY, Le LP, Gowen K, Stephens PJ, Ross JS, Ali SM, Miller VA, Johnson ML, Lovly CM, Hata AN, Gainor JF, Iafrate AJ, Shaw AT, Ou SI.

J Clin Oncol. 2018 Apr 20;36(12):1199-1206. doi: 10.1200/JCO.2017.76.2294. Epub 2018 Jan 26.

PMID:
29373100
43.

ALK, ROS1, and NTRK Rearrangements in Metastatic Colorectal Cancer.

Pietrantonio F, Di Nicolantonio F, Schrock AB, Lee J, Tejpar S, Sartore-Bianchi A, Hechtman JF, Christiansen J, Novara L, Tebbutt N, Fucà G, Antoniotti C, Kim ST, Murphy D, Berenato R, Morano F, Sun J, Min B, Stephens PJ, Chen M, Lazzari L, Miller VA, Shoemaker R, Amatu A, Milione M, Ross JS, Siena S, Bardelli A, Ali SM, Falcone A, de Braud F, Cremolini C.

J Natl Cancer Inst. 2017 Dec 1;109(12). doi: 10.1093/jnci/djx089.

PMID:
29370427
44.

Hybrid Capture-Based Genomic Profiling of Circulating Tumor DNA from Patients with Advanced Cancers of the Gastrointestinal Tract or Anus.

Schrock AB, Pavlick D, Klempner SJ, Chung JH, Forcier B, Welsh A, Young L, Leyland-Jones B, Bordoni R, Carvajal RD, Chao J, Kurzrock R, Sicklick JK, Ross JS, Stephens PJ, Devoe C, Braiteh F, Ali SM, Miller VA.

Clin Cancer Res. 2018 Apr 15;24(8):1881-1890. doi: 10.1158/1078-0432.CCR-17-3103. Epub 2018 Jan 23.

45.

Recurrent hyperactive ESR1 fusion proteins in endocrine therapy-resistant breast cancer.

Hartmaier RJ, Trabucco SE, Priedigkeit N, Chung JH, Parachoniak CA, Vanden Borre P, Morley S, Rosenzweig M, Gay LM, Goldberg ME, Suh J, Ali SM, Ross J, Leyland-Jones B, Young B, Williams C, Park B, Tsai M, Haley B, Peguero J, Callahan RD, Sachelarie I, Cho J, Atkinson JM, Bahreini A, Nagle AM, Puhalla SL, Watters RJ, Erdogan-Yildirim Z, Cao L, Oesterreich S, Mathew A, Lucas PC, Davidson NE, Brufsky AM, Frampton GM, Stephens PJ, Chmielecki J, Lee AV.

Ann Oncol. 2018 Apr 1;29(4):872-880. doi: 10.1093/annonc/mdy025.

46.

Measuring management's perspective of data quality in Pakistan's Tuberculosis control programme: a test-based approach to identify data quality dimensions.

Ali SM, Anjum N, Kamel Boulos MN, Ishaq M, Aamir J, Haider GR.

BMC Res Notes. 2018 Jan 16;11(1):40. doi: 10.1186/s13104-018-3161-8.

47.

Targeting HER2 in colorectal cancer: The landscape of amplification and short variant mutations in ERBB2 and ERBB3.

Ross JS, Fakih M, Ali SM, Elvin JA, Schrock AB, Suh J, Vergilio JA, Ramkissoon S, Severson E, Daniel S, Fabrizio D, Frampton G, Sun J, Miller VA, Stephens PJ, Gay LM.

Cancer. 2018 Apr 1;124(7):1358-1373. doi: 10.1002/cncr.31125. Epub 2018 Jan 16.

48.

BRCA2 Reversion Mutation Associated With Acquired Resistance to Olaparib in Estrogen Receptor-positive Breast Cancer Detected by Genomic Profiling of Tissue and Liquid Biopsy.

Gornstein EL, Sandefur S, Chung JH, Gay LM, Holmes O, Erlich RL, Soman S, Martin LK, Rose AV, Stephens PJ, Ross JS, Miller VA, Ali SM, Blau S.

Clin Breast Cancer. 2018 Apr;18(2):184-188. doi: 10.1016/j.clbc.2017.12.010. Epub 2017 Dec 21. No abstract available.

PMID:
29325860
49.

Orally administered endoxifen inhibits tumor growth in melanoma-bearing mice.

Chen P, Sheikh S, Ahmad A, Ali SM, Ahmad MU, Ahmad I.

Cell Mol Biol Lett. 2018 Jan 3;23:3. doi: 10.1186/s11658-017-0068-7. eCollection 2018.

50.

Extraction of Gd3+ and UO22+ Ions Using Polystyrene Grafted Dibenzo Crown Ether (DB18C6) with Octanol and Nitrobenzene: A Molecular Dynamics Study.

Sappidi P, Namsani S, Ali SM, Singh JK.

J Phys Chem B. 2018 Jan 25;122(3):1334-1344. doi: 10.1021/acs.jpcb.7b11384. Epub 2018 Jan 16.

PMID:
29281280

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