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Impact of Tramadol Abuse on Clinical Outcome of Lumbar Discectomy patients'.

Hassan Hashisha RK, Ali SM, Awad TE.

Neurotoxicology. 2019 Jul 18. pii: S0161-813X(19)30057-9. doi: 10.1016/j.neuro.2019.06.009. [Epub ahead of print]


Clinical evaluation for morbidity associated with soil-transmitted helminth infection in school-age children on Pemba Island, Tanzania.

Bogoch II, Speich B, Lo NC, Moser W, Croll D, Ali SM, Ame SM, Utzinger J, Andrews JR, Keiser J.

PLoS Negl Trop Dis. 2019 Jul 15;13(7):e0007581. doi: 10.1371/journal.pntd.0007581. [Epub ahead of print]


Pan-Cancer Analysis of CDK12 Loss-of-Function Alterations and Their Association with the Focal Tandem-Duplicator Phenotype.

Sokol ES, Pavlick D, Frampton GM, Ross JS, Miller VA, Ali SM, Lotan TL, Pardoll DM, Chung JH, Antonarakis ES.

Oncologist. 2019 Jul 10. pii: theoncologist.2019-0214. doi: 10.1634/theoncologist.2019-0214. [Epub ahead of print]


3Ts of low cure rate: taxonomy, themes and theory of low cure rate in Pakistan's TB control programme and gathering a 360-degree perspective through qualitative, in-depth interviewing approach.

Ali SM, Hussain S, Ishaq M, Ali S, Naureen F, Noor A, Rashid A, Anjum N.

BMJ Open. 2019 Jul 9;9(7):e025707. doi: 10.1136/bmjopen-2018-025707.


Novel tool for Minimally Brain Surgery - Syringe Port System.

Sharif S, Shaikh MY, Ali SM.

World Neurosurg. 2019 Jul 5. pii: S1878-8750(19)31859-5. doi: 10.1016/j.wneu.2019.06.202. [Epub ahead of print]


TNS1-ALK Fusion in a Recurrent, Metastatic Uterine Mesenchymal Tumor Originally Diagnosed as Leiomyosarcoma.

Lee J, Singh A, Ali SM, Lin DI, Klempner SJ.

Acta Med Acad. 2019 Apr;48(1):116-120. doi: 10.5644/ama2006-124.248.


Prevalence of established and emerging biomarkers of immune checkpoint inhibitor response in advanced hepatocellular carcinoma.

Ang C, Klempner SJ, Ali SM, Madison R, Ross JS, Severson EA, Fabrizio D, Goodman A, Kurzrock R, Suh J, Millis SZ.

Oncotarget. 2019 Jun 18;10(40):4018-4025. doi: 10.18632/oncotarget.26998. eCollection 2019 Jun 18.


Evaluation of integrated interventions layered on mass drug administration for urogenital schistosomiasis elimination: a cluster-randomised trial.

Knopp S, Person B, Ame SM, Ali SM, Hattendorf J, Juma S, Muhsin J, Khamis IS, Mohammed KA, Utzinger J, Hollenberg E, Kabole F, Rollinson D.

Lancet Glob Health. 2019 Aug;7(8):e1118-e1129. doi: 10.1016/S2214-109X(19)30189-5. Epub 2019 Jun 26.


Biologically active metabolite(s) from haemolymph of red-headed centipede Scolopendra subspinipes possess broad spectrum antibacterial activity.

Ali SM, Khan NA, Sagathevan K, Anwar A, Siddiqui R.

AMB Express. 2019 Jun 28;9(1):95. doi: 10.1186/s13568-019-0816-3.


FGFR2-Altered Gastroesophageal Adenocarcinomas Are an Uncommon Clinicopathologic Entity with a Distinct Genomic Landscape.

Klempner SJ, Madison R, Pujara V, Ross JS, Miller VA, Ali SM, Schrock AB, Kim ST, Maron SB, Dayyani F, Catenacci DVT, Lee J, Chao J.

Oncologist. 2019 Jun 27. pii: theoncologist.2019-0121. doi: 10.1634/theoncologist.2019-0121. [Epub ahead of print]


Molecular Dynamics Simulation of Amorphous SiO2, B2O3, Na2O-SiO2, Na2O-B2O3, and Na2O-B2O3-SiO2 Glasses with Variable Compositions and with Cs2O and SrO Dopants.

Sahu P, Pente AA, Singh MD, Chowdhri IA, Sharma K, Goswami M, Ali SM, Shenoy KT, Mohan S.

J Phys Chem B. 2019 Jul 11. doi: 10.1021/acs.jpcb.9b03026. [Epub ahead of print]


Clinical and immunological implications of frameshift mutations in lung cancer.

Chae YK, Viveiros P, Lopes G, Sukhadia B, Sheikh MM, Saravia D, Florou V, Sokol ES, Frampton GM, Chalmers ZR, Ali SM, Ross JS, Chang S, Wang S, Chiec L, Rahbari A, Mohindra N, Villaflor V, Shin SH, Oh M, Anker J, Park LC, Wang V, Chuang J, Park W.

J Thorac Oncol. 2019 Jun 22. pii: S1556-0864(19)30496-4. doi: 10.1016/j.jtho.2019.06.016. [Epub ahead of print]


Prospective Comprehensive Genomic Profiling of Primary and Metastatic Prostate Tumors.

Chung JH, Dewal N, Sokol E, Mathew P, Whitehead R, Millis SZ, Frampton GM, Bratslavsky G, Pal SK, Lee RJ, Necchi A, Gregg JP, Lara P Jr, Antonarakis ES, Miller VA, Ross JS, Ali SM, Agarwal N.

JCO Precis Oncol. 2019;3. doi: 10.1200/PO.18.00283. Epub 2019 May 10.


Efficacy and Safety of a Single Dose versus a Multiple Dose Regimen of Mebendazole against Hookworm Infections in Children: A Randomised, Double-blind Trial.

Palmeirim MS, Ame SM, Ali SM, Hattendorf J, Keiser J.

EClinicalMedicine. 2018 Jul 11;1:7-13. doi: 10.1016/j.eclinm.2018.06.004. eCollection 2018 Jul.


SMARCA4 inactivation defines a subset of undifferentiated uterine sarcomas with rhabdoid and small cell features and germline mutation association.

Lin DI, Allen JM, Hecht JL, Killian JK, Ngo NT, Edgerly C, Severson EA, Ali SM, Erlich RL, Ramkissoon SH, Vergilio JA, Ross JS, Elvin JA.

Mod Pathol. 2019 Jun 12. doi: 10.1038/s41379-019-0303-z. [Epub ahead of print]


Highly Efficient N-Pivot Tripodal Diglycolamide Ligands for Trivalent f-Cations: Synthesis, Extraction, Spectroscopy, and Density Functional Theory Studies.

Ansari SA, Mohapatra PK, Leoncini A, Ali SM, Huskens J, Verboom W.

Inorg Chem. 2019 Jul 1;58(13):8633-8644. doi: 10.1021/acs.inorgchem.9b00985. Epub 2019 Jun 10.


An invisible workforce: the neglected role of cleaners in patient safety on maternity units.

Cross S, Gon G, Morrison E, Afsana K, Ali SM, Manjang T, Manneh L, Rahman A, Saxena D, Vora K, Graham WJ.

Glob Health Action. 2019;12(1):1480085. doi: 10.1080/16549716.2018.1480085.


Genomic Features of Metastatic Testicular Sex Cord Stromal Tumors.

Necchi A, Bratslavsky G, Shapiro O, Elvin JA, Vergilio JA, Killian JK, Ngo N, Ramkissoon S, Severson E, Hemmerich AC, Ali SM, Chung JH, Reddy P, Miller VA, Schrock AB, Gay LM, Ross JS, Jacob JM.

Eur Urol Focus. 2019 May 27. pii: S2405-4569(19)30149-X. doi: 10.1016/j.euf.2019.05.012. [Epub ahead of print]


Molecular Dynamics Simulation Studies on Structure, Dynamics, and Thermodynamics of Uranyl Nitrate Solution at Various Acid Concentrations.

Das A, Ali SM.

J Phys Chem B. 2019 May 30;123(21):4571-4586. doi: 10.1021/acs.jpcb.9b01498. Epub 2019 May 17.


A 5-Year intervention study on elimination of urogenital schistosomiasis in Zanzibar: Parasitological results of annual cross-sectional surveys.

Knopp S, Ame SM, Person B, Hattendorf J, Rabone M, Juma S, Muhsin J, Khamis IS, Hollenberg E, Mohammed KA, Kabole F, Ali SM, Rollinson D.

PLoS Negl Trop Dis. 2019 May 6;13(5):e0007268. doi: 10.1371/journal.pntd.0007268. eCollection 2019 May.


Efficacy and safety of ascending dosages of moxidectin and moxidectin-albendazole against Trichuristrichiura in adolescents: a randomized controlled trial.

Keller L, Palmeirim MS, Ame SM, Ali SM, Puchkov M, Huwyler J, Hattendorf J, Keiser J.

Clin Infect Dis. 2019 May 2. pii: ciz326. doi: 10.1093/cid/ciz326. [Epub ahead of print]


Analysis of DNA Damage Response Gene Alterations and Tumor Mutational Burden Across 17,486 Tubular Gastrointestinal Carcinomas: Implications for Therapy.

Parikh AR, He Y, Hong TS, Corcoran RB, Clark JW, Ryan DP, Zou L, Ting DT, Catenacci DV, Chao J, Fakih M, Klempner SJ, Ross JS, Frampton GM, Miller VA, Ali SM, Schrock AB.

Oncologist. 2019 Apr 30. pii: theoncologist.2019-0034. doi: 10.1634/theoncologist.2019-0034. [Epub ahead of print]


Tumor mutational burden is predictive of response to immune checkpoint inhibitors in MSI-high metastatic colorectal cancer.

Schrock AB, Ouyang C, Sandhu J, Sokol E, Jin D, Ross JS, Miller VA, Lim D, Amanam I, Chao J, Catenacci D, Cho M, Braiteh F, Klempner SJ, Ali SM, Fakih M.

Ann Oncol. 2019 Apr 30. pii: mdz134. doi: 10.1093/annonc/mdz134. [Epub ahead of print]


Cerebral Coenurosis Masquerading as Malignancy: A Rare Case Report from India.

Ali SM, Reddy PS, Venugopal S, Chhabra M, Mahadevan A.

J Neurosci Rural Pract. 2019 Apr-Jun;10(2):367-370. doi: 10.4103/jnrp.jnrp_296_18.


Synthesis and Characterization of BaTiO₃/Polypyrrole Composites with Exceptional Dielectric Behaviour.

Ahmed K, Kanwal F, Ramay SM, Atiq S, Rehman R, Ali SM, Alzayed NS.

Polymers (Basel). 2018 Nov 16;10(11). pii: E1273. doi: 10.3390/polym10111273.


Correction to: Urogenital schistosomiasis elimination in Zanzibar: accuracy of urine filtration and haematuria reagent strips for diagnosing light intensity Schistosoma haematobium infections.

Knopp S, Ame SM, Hattendorf J, Ali SM, Khamis IS, Bakar F, Khamis MA, Person B, Kabole F, Rollinson D.

Parasit Vectors. 2019 Mar 28;12(1):149. doi: 10.1186/s13071-019-3397-8.


Efficacy and safety of ivermectin and albendazole co-administration in school-aged children and adults infected with Trichuris trichiura: study protocol for a multi-country randomized controlled double-blind trial.

Patel C, Hürlimann E, Keller L, Hattendorf J, Sayasone S, Ali SM, Ame SM, Coulibaly JT, Keiser J.

BMC Infect Dis. 2019 Mar 18;19(1):262. doi: 10.1186/s12879-019-3882-x.


Differential response to a combination of full-dose osimertinib and crizotinib in a patient with EGFR-mutant non-small cell lung cancer and emergent MET amplification.

Zhu VW, Schrock AB, Ali SM, Ou SI.

Lung Cancer (Auckl). 2019 Mar 12;10:21-26. doi: 10.2147/LCTT.S190403. eCollection 2019.


Real-Time Targeted Genome Profile Analysis of Pancreatic Ductal Adenocarcinomas Identifies Genetic Alterations That Might Be Targeted With Existing Drugs or Used as Biomarkers.

Singhi AD, George B, Greenbowe JR, Chung J, Suh J, Maitra A, Klempner SJ, Hendifar A, Milind JM, Golan T, Brand RE, Zureikat AH, Roy S, Schrock AB, Miller VA, Ross JS, Ali SM, Bahary N.

Gastroenterology. 2019 Jun;156(8):2242-2253.e4. doi: 10.1053/j.gastro.2019.02.037. Epub 2019 Mar 2.


Novel Chitohexaose Analog Protects Young and Aged mice from CLP Induced Polymicrobial Sepsis.

Das P, Panda SK, Agarwal B, Behera S, Ali SM, Pulse ME, Solomkin JS, Opal SM, Bhandari V, Acharya S.

Sci Rep. 2019 Feb 27;9(1):2904. doi: 10.1038/s41598-019-38731-3.


Surface Decoration of Selenium Nanoparticles by Proteins from the Culinary-Medicinal Shiitake Mushroom, Lentinus edodes (Agaricomycetes), for Enhanced Fibrinolytic Activity.

Ali SM, Raman J, Lakshmanan H, Ling TC, Phan CW, Tan YS, Sabaratnam V.

Int J Med Mushrooms. 2018;20(11):1021-1030. doi: 10.1615/IntJMedMushrooms.2018028307.


Unique mutation patterns in anaplastic thyroid cancer identified by comprehensive genomic profiling.

Khan SA, Ci B, Xie Y, Gerber DE, Beg MS, Sherman SI, Cabanillas ME, Busaidy NL, Burtness BA, Heilmann AM, Bailey M, Ross JS, Sher DJ, Ali SM.

Head Neck. 2019 Jun;41(6):1928-1934. doi: 10.1002/hed.25634. Epub 2019 Feb 13.


Hybrid Capture-Based Genomic Profiling Identifies BRAF V600 and Non-V600 Alterations in Melanoma Samples Negative by Prior Testing.

Boussemart L, Nelson A, Wong M, Ross JS, Sosman J, Mehnert J, Daniels G, Kendra K, Ali SM, Miller VA, Schrock AB.

Oncologist. 2019 May;24(5):657-663. doi: 10.1634/theoncologist.2018-0271. Epub 2019 Jan 25.


Variable Response to ALK Inhibitors in NSCLC with a Novel MYT1L-ALK Fusion.

Tsou TC, Gowen K, Ali SM, Miller VA, Schrock AB, Lovly CM, Reckamp KL.

J Thorac Oncol. 2019 Feb;14(2):e29-e30. doi: 10.1016/j.jtho.2018.10.169. No abstract available.


Novel SPECC1L-MET Fusion Detected in Circulating Tumor DNA in a Patient with Lung Adenocarcinoma following Treatment with Erlotinib and Osimertinib.

Nelson AW, Schrock AB, Pavlick DC, Ali SM, Atkinson EC, Chachoua A.

J Thorac Oncol. 2019 Feb;14(2):e27-e29. doi: 10.1016/j.jtho.2018.10.160. No abstract available.


Genomic Features for Therapeutic Insights of Chemotherapy-Resistant, Primary Mediastinal Nonseminomatous Germ Cell Tumors and Comparison with Gonadal Counterpart.

Necchi A, Bratslavsky G, Chung J, Millis S, Gay LM, Ali SM, Ross JS.

Oncologist. 2019 Apr;24(4):e142-e145. doi: 10.1634/theoncologist.2018-0430. Epub 2019 Jan 18.


Phosphatidylinositol 3-kinase pathway genomic alterations in 60,991 diverse solid tumors informs targeted therapy opportunities.

Millis SZ, Jardim DL, Albacker L, Ross JS, Miller VA, Ali SM, Kurzrock R.

Cancer. 2019 Apr 1;125(7):1185-1199. doi: 10.1002/cncr.31921. Epub 2018 Dec 24.


Molecular characterization of novel sequence type of carbapenem-resistant New Delhi metallo-β-lactamase-1-producing Klebsiella pneumoniae in the neonatal intensive care unit of an Indian hospital.

Ahmad N, Ali SM, Khan AU.

Int J Antimicrob Agents. 2019 Apr;53(4):525-529. doi: 10.1016/j.ijantimicag.2018.12.005. Epub 2018 Dec 20.


Tumor mutational burden and response to programmed cell death protein 1 inhibitors in a case series of patients with metastatic desmoplastic melanoma.

Boussemart L, Johnson A, Schrock AB, Pal SK, Frampton GM, Fabrizio D, Chalmers Z, Lotem M, Gibney G, Russell J, Chmielowski B, Ross JS, Stephens PJ, Miller VA, Ali SM.

J Am Acad Dermatol. 2019 Jun;80(6):1780-1782. doi: 10.1016/j.jaad.2018.12.020. Epub 2018 Dec 18. No abstract available.


Molecular mechanism involved in cyclophosphamide-induced cardiotoxicity: Old drug with a new vision.

Iqubal A, Iqubal MK, Sharma S, Ansari MA, Najmi AK, Ali SM, Ali J, Haque SE.

Life Sci. 2019 Feb 1;218:112-131. doi: 10.1016/j.lfs.2018.12.018. Epub 2018 Dec 12. Review.


Comprehensive genomic profiling identifies novel NTRK fusions in neuroendocrine tumors.

Sigal DS, Bhangoo MS, Hermel JA, Pavlick DC, Frampton G, Miller VA, Ross JS, Ali SM.

Oncotarget. 2018 Nov 9;9(88):35809-35812. doi: 10.18632/oncotarget.26260. eCollection 2018 Nov 9.


A cluster randomised controlled trial of two rounds of mass drug administration in Zanzibar, a malaria pre-elimination setting-high coverage and safety, but no significant impact on transmission.

Morris U, Msellem MI, Mkali H, Islam A, Aydin-Schmidt B, Jovel I, Shija SJ, Khamis M, Ali SM, Hodzic L, Magnusson E, Poirot E, Bennett A, Sachs MC, Tarning J, Mårtensson A, Ali AS, Björkman A.

BMC Med. 2018 Dec 10;16(1):215. doi: 10.1186/s12916-018-1202-8.


Dramatic response to alectinib in a lung cancer patient with a novel VKORC1L1-ALK fusion and an acquired ALK T1151K mutation.

Zhu VW, Schrock AB, Bosemani T, Benn BS, Ali SM, Ou SI.

Lung Cancer (Auckl). 2018 Nov 8;9:111-116. doi: 10.2147/LCTT.S186804. eCollection 2018.


RET rearrangements are actionable alterations in breast cancer.

Paratala BS, Chung JH, Williams CB, Yilmazel B, Petrosky W, Williams K, Schrock AB, Gay LM, Lee E, Dolfi SC, Pham K, Lin S, Yao M, Kulkarni A, DiClemente F, Liu C, Rodriguez-Rodriguez L, Ganesan S, Ross JS, Ali SM, Leyland-Jones B, Hirshfield KM.

Nat Commun. 2018 Nov 16;9(1):4821. doi: 10.1038/s41467-018-07341-4.


Loss of function of NF1 is a mechanism of acquired resistance to endocrine therapy in lobular breast cancer.

Sokol ES, Feng YX, Jin DX, Basudan A, Lee AV, Atkinson JM, Chen J, Stephens PJ, Frampton GM, Gupta PB, Ross JS, Chung JH, Oesterreich S, Ali SM, Hartmaier RJ.

Ann Oncol. 2019 Jan 1;30(1):115-123. doi: 10.1093/annonc/mdy497.


Production of Cold-Active Lipase by Free and Immobilized Marine Bacillus cereus HSS: Application in Wastewater Treatment.

Hassan SWM, Abd El Latif HH, Ali SM.

Front Microbiol. 2018 Oct 23;9:2377. doi: 10.3389/fmicb.2018.02377. eCollection 2018.


Clinical utility of tumor genomic profiling in patients with high plasma circulating tumor DNA burden or metabolically active tumors.

Zhou C, Yuan Z, Ma W, Qi L, Mahavongtrakul A, Li Y, Li H, Gong J, Fan RR, Li J, Molmen M, Clark TA, Pavlick D, Frampton GM, Forcier B, Moore EH, Shelton DK, Cooke M, Ali SM, Miller VA, Gregg JP, Stephens PJ, Li T.

J Hematol Oncol. 2018 Nov 6;11(1):129. doi: 10.1186/s13045-018-0671-8.


Prevalence of schistosomiasis and associated risk factors among school children in Um-Asher Area, Khartoum, Sudan.

Hajissa K, Muhajir AEMA, Eshag HA, Alfadel A, Nahied E, Dahab R, Ali SM, Mohammed M, Gaafar M, Mohamed Z.

BMC Res Notes. 2018 Oct 31;11(1):779. doi: 10.1186/s13104-018-3871-y.

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