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The return of the frogs: The importance of habitat refugia in maintaining diversity during a disease outbreak.

Mcknight DT, Lal MM, Bower DS, Schwarzkopf L, Alford RA, Zenger KR.

Mol Ecol. 2019 Apr 23. doi: 10.1111/mec.15108. [Epub ahead of print]


A humanized yeast system to analyze cleavage of prelamin A by ZMPSTE24.

Spear ED, Alford RF, Babatz TD, Wood KM, Mossberg OW, Odinammadu K, Shilagardi K, Gray JJ, Michaelis S.

Methods. 2019 Mar 15;157:47-55. doi: 10.1016/j.ymeth.2019.01.001. Epub 2019 Jan 6. Review.


Is Saglin a mosquito salivary gland receptor for Plasmodium falciparum?

O'Brochta DA, Alford R, Harrell R, Aluvihare C, Eappen AG, Li T, Chakravarty S, Sim BKL, Hoffman SL, Billingsley PF.

Malar J. 2019 Jan 3;18(1):2. doi: 10.1186/s12936-018-2634-5.


Disentangling causes of seasonal infection prevalence patterns: tropical tadpoles and chytridiomycosis as a model system.

Sapsford SJ, Alford RA, Schwarzkopf L.

Dis Aquat Organ. 2018 Sep 10;130(2):83-93. doi: 10.3354/dao03269.


An Anopheles stephensi Promoter-Trap: Augmenting Genome Annotation and Functional Genomics.

Reid W, Pilitt K, Alford R, Cervantes-Medina A, Yu H, Aluvihare C, Harrell R, O'Brochta DA.

G3 (Bethesda). 2018 Oct 3;8(10):3119-3130. doi: 10.1534/g3.118.200347.


Spinal arthritis in cane toads across the Australian landscape.

Bower DS, Yasumiba K, Trumbo DR, Alford RA, Schwarzkopf L.

Sci Rep. 2018 Aug 20;8(1):12458. doi: 10.1038/s41598-018-30099-0.


Increased Numbers of Culturable Inhibitory Bacterial Taxa May Mitigate the Effects of Batrachochytrium dendrobatidis in Australian Wet Tropics Frogs.

Bell SC, Garland S, Alford RA.

Front Microbiol. 2018 Jul 18;9:1604. doi: 10.3389/fmicb.2018.01604. eCollection 2018.


Magnetic Resonance Imaging of Tumor-Associated Macrophages: Clinical Translation.

Aghighi M, Theruvath AJ, Pareek A, Pisani LL, Alford R, Muehe AM, Sethi TK, Holdsworth SJ, Hazard FK, Gratzinger D, Luna-Fineman S, Advani R, Spunt SL, Daldrup-Link HE.

Clin Cancer Res. 2018 Sep 1;24(17):4110-4118. doi: 10.1158/1078-0432.CCR-18-0673. Epub 2018 May 15.


A cyber-linked undergraduate research experience in computational biomolecular structure prediction and design.

Alford RF, Leaver-Fay A, Gonzales L, Dolan EL, Gray JJ.

PLoS Comput Biol. 2017 Dec 7;13(12):e1005837. doi: 10.1371/journal.pcbi.1005837. eCollection 2017 Dec.


Fighting an uphill battle: the recovery of frogs in Australia's Wet Tropics.

McKnight DT, Alford RA, Hoskin CJ, Schwarzkopf L, Greenspan SE, Zenger KR, Bower DS.

Ecology. 2017 Dec;98(12):3221-3223. doi: 10.1002/ecy.2019. Epub 2017 Nov 15. No abstract available.


White blood cell profiles in amphibians help to explain disease susceptibility following temperature shifts.

Greenspan SE, Bower DS, Webb RJ, Berger L, Rudd D, Schwarzkopf L, Alford RA.

Dev Comp Immunol. 2017 Dec;77:280-286. doi: 10.1016/j.dci.2017.08.018. Epub 2017 Sep 1.


Infection increases vulnerability to climate change via effects on host thermal tolerance.

Greenspan SE, Bower DS, Roznik EA, Pike DA, Marantelli G, Alford RA, Schwarzkopf L, Scheffers BR.

Sci Rep. 2017 Aug 24;7(1):9349. doi: 10.1038/s41598-017-09950-3.


Using a Bayesian network to clarify areas requiring research in a host-pathogen system.

Bower DS, Mengersen K, Alford RA, Schwarzkopf L.

Conserv Biol. 2017 Dec;31(6):1373-1382. doi: 10.1111/cobi.12950. Epub 2017 Aug 10.


The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design.

Alford RF, Leaver-Fay A, Jeliazkov JR, O'Meara MJ, DiMaio FP, Park H, Shapovalov MV, Renfrew PD, Mulligan VK, Kappel K, Labonte JW, Pacella MS, Bonneau R, Bradley P, Dunbrack RL Jr, Das R, Baker D, Kuhlman B, Kortemme T, Gray JJ.

J Chem Theory Comput. 2017 Jun 13;13(6):3031-3048. doi: 10.1021/acs.jctc.7b00125. Epub 2017 May 12.


Postoperative surveillance of pediatric cerebellar pilocytic astrocytoma.

Alford R, Gargan L, Bowers DC, Klesse LJ, Weprin B, Koral K.

J Neurooncol. 2016 Oct;130(1):149-154. Epub 2016 Aug 9.


Organization of olfactory centres in the malaria mosquito Anopheles gambiae.

Riabinina O, Task D, Marr E, Lin CC, Alford R, O'Brochta DA, Potter CJ.

Nat Commun. 2016 Oct 3;7:13010. doi: 10.1038/ncomms13010.


Robust calling performance in frogs infected by a deadly fungal pathogen.

Greenspan SE, Roznik EA, Schwarzkopf L, Alford RA, Pike DA.

Ecol Evol. 2016 Jul 27;6(16):5964-72. doi: 10.1002/ece3.2256. eCollection 2016 Aug.


Mixed population genomics support for the central marginal hypothesis across the invasive range of the cane toad (Rhinella marina) in Australia.

Trumbo DR, Epstein B, Hohenlohe PA, Alford RA, Schwarzkopf L, Storfer A.

Mol Ecol. 2016 Sep;25(17):4161-76. doi: 10.1111/mec.13754. Epub 2016 Aug 8.


Rapid differentiation of sexual signals in invasive toads: call variation among populations.

Yasumiba K, Duffy RL, Parsons SA, Alford RA, Schwarzkopf L.

Sci Rep. 2016 Jun 22;6:28158. doi: 10.1038/srep28158.


Robust classification of protein variation using structural modelling and large-scale data integration.

Baugh EH, Simmons-Edler R, Müller CL, Alford RF, Volfovsky N, Lash AE, Bonneau R.

Nucleic Acids Res. 2016 Apr 7;44(6):2501-13. doi: 10.1093/nar/gkw120. Epub 2016 Feb 28.


Cell Density Effects of Frog Skin Bacteria on Their Capacity to Inhibit Growth of the Chytrid Fungus, Batrachochytrium dendrobatidis.

Yasumiba K, Bell S, Alford R.

Microb Ecol. 2016 Jan;71(1):124-30. doi: 10.1007/s00248-015-0701-9. Epub 2015 Nov 12.


An Integrated Framework Advancing Membrane Protein Modeling and Design.

Alford RF, Koehler Leman J, Weitzner BD, Duran AM, Tilley DC, Elazar A, Gray JJ.

PLoS Comput Biol. 2015 Sep 1;11(9):e1004398. doi: 10.1371/journal.pcbi.1004398. eCollection 2015 Sep.


Natural disturbance reduces disease risk in endangered rainforest frog populations.

Roznik EA, Sapsford SJ, Pike DA, Schwarzkopf L, Alford RA.

Sci Rep. 2015 Aug 21;5:13472. doi: 10.1038/srep13472.


Infection dynamics in frog populations with different histories of decline caused by a deadly disease.

Sapsford SJ, Voordouw MJ, Alford RA, Schwarzkopf L.

Oecologia. 2015 Dec;179(4):1099-110. doi: 10.1007/s00442-015-3422-3. Epub 2015 Aug 21.


Patterns of Batrachochytrium dendrobatidis transmission between tadpoles in a high-elevation rainforest stream in tropical Australia.

Hagman M, Alford RA.

Dis Aquat Organ. 2015 Aug 20;115(3):213-21. doi: 10.3354/dao02898.


Condition-dependent reproductive effort in frogs infected by a widespread pathogen.

Roznik EA, Sapsford SJ, Pike DA, Schwarzkopf L, Alford RA.

Proc Biol Sci. 2015 Jul 7;282(1810). pii: 20150694. doi: 10.1098/rspb.2015.0694.


Seasonal Ecology and Behavior of an Endangered Rainforest Frog (Litoria rheocola) Threatened by Disease.

Roznik EA, Alford RA.

PLoS One. 2015 May 19;10(5):e0127851. doi: 10.1371/journal.pone.0127851. eCollection 2015.


DNA sequence analysis and genotype-phenotype assessment in 71 patients with syndromic hearing loss or auditory neuropathy.

Tang HY, Fang P, Lin JW, Darilek S, Osborne BT, Haymond JA, Manolidis S, Roa BB, Oghalai JS, Alford RL.

BMJ Open. 2015 May 19;5(5):e007506. doi: 10.1136/bmjopen-2014-007506.


Testing the relationship between human occupancy in the landscape and tadpole developmental stress.

Eterovick PC, Bar LF, Souza JB, Castro JF, Leite FS, Alford RA.

PLoS One. 2015 Mar 20;10(3):e0120172. doi: 10.1371/journal.pone.0120172. eCollection 2015.


Host-specific thermal profiles affect fitness of a widespread pathogen.

Stevenson LA, Roznik EA, Alford RA, Pike DA.

Ecol Evol. 2014 Nov;4(21):4053-64. doi: 10.1002/ece3.1271. Epub 2014 Oct 3.


Experimental evolution alters the rate and temporal pattern of population growth in Batrachochytrium dendrobatidis, a lethal fungal pathogen of amphibians.

Voyles J, Johnson LR, Briggs CJ, Cashins SD, Alford RA, Berger L, Skerratt LF, Speare R, Rosenblum EB.

Ecol Evol. 2014 Sep;4(18):3633-41. doi: 10.1002/ece3.1199. Epub 2014 Sep 3.


Using pairs of physiological models to estimate temporal variation in amphibian body temperature.

Roznik EA, Alford RA.

J Therm Biol. 2014 Oct;45:22-9. doi: 10.1016/j.jtherbio.2014.07.005. Epub 2014 Jul 30.


Intermittent pool beds are permanent cyclic habitats with distinct wet, moist and dry phases.

Dell AI, Alford RA, Pearson RG.

PLoS One. 2014 Sep 22;9(9):e108203. doi: 10.1371/journal.pone.0108203. eCollection 2014.


Mechanisms causing variation in sexual size dimorphism in three sympatric, congeneric lizards.

Manicom C, Alford R, Schoener TW, Schwarzkopf L.

Ecology. 2014 Jun;95(6):1531-44.


Applicability of apparent diffusion coefficient ratios in preoperative diagnosis of common pediatric cerebellar tumors across two institutions.

Koral K, Alford R, Choudhury N, Mossa-Basha M, Gargan L, Gimi B, Gao A, Zhang S, Bowers DC, Koral KM, Izbudak I.

Neuroradiology. 2014 Sep;56(9):781-8. doi: 10.1007/s00234-014-1398-z. Epub 2014 Jun 29.


Cool temperatures reduce antifungal activity of symbiotic bacteria of threatened amphibians--implications for disease management and patterns of decline.

Daskin JH, Bell SC, Schwarzkopf L, Alford RA.

PLoS One. 2014 Jun 18;9(6):e100378. doi: 10.1371/journal.pone.0100378. eCollection 2014.


American College of Medical Genetics and Genomics guideline for the clinical evaluation and etiologic diagnosis of hearing loss.

Alford RL, Arnos KS, Fox M, Lin JW, Palmer CG, Pandya A, Rehm HL, Robin NH, Scott DA, Yoshinaga-Itano C; ACMG Working Group on Update of Genetics Evaluation Guidelines for the Etiologic Diagnosis of Congenital Hearing Loss; Professional Practice and Guidelines Committee.

Genet Med. 2014 Apr;16(4):347-55. doi: 10.1038/gim.2014.2. Epub 2014 Mar 20.


Elevation, temperature, and aquatic connectivity all influence the infection dynamics of the amphibian chytrid fungus in adult frogs.

Sapsford SJ, Alford RA, Schwarzkopf L.

PLoS One. 2013 Dec 4;8(12):e82425. doi: 10.1371/journal.pone.0082425. eCollection 2013.


Variation in thermal performance of a widespread pathogen, the amphibian chytrid fungus Batrachochytrium dendrobatidis.

Stevenson LA, Alford RA, Bell SC, Roznik EA, Berger L, Pike DA.

PLoS One. 2013 Sep 4;8(9):e73830. doi: 10.1371/journal.pone.0073830. eCollection 2013.


Clinical significance of indeterminate pulmonary nodules in patients with locally advanced head and neck squamous cell carcinoma.

Alford RE, Fried DV, Huang BY, Weissler M, Shores C, Shockley W, Hackman T, Zanation A, Hayes N, Weiss J, Grilley-Olson J, Jewells V, Birchard K, Chera BS.

Head Neck. 2014 Mar;36(3):334-9. doi: 10.1002/hed.23294. Epub 2013 Jun 1.


Hot bodies protect amphibians against chytrid infection in nature.

Rowley JJ, Alford RA.

Sci Rep. 2013;3:1515. doi: 10.1038/srep01515.


Screening bacterial metabolites for inhibitory effects against Batrachochytrium dendrobatidis using a spectrophotometric assay.

Bell SC, Alford RA, Garland S, Padilla G, Thomas AD.

Dis Aquat Organ. 2013 Mar 13;103(1):77-85. doi: 10.3354/dao02560.


There is no evidence for a temporal link between pathogen arrival and frog extinctions in north-eastern Australia.

Phillips BL, Puschendorf R, Vanderwal J, Alford RA.

PLoS One. 2012;7(12):e52502. doi: 10.1371/journal.pone.0052502. Epub 2012 Dec 27.


Immune evasion or avoidance: fungal skin infection linked to reduced defence peptides in Australian green-eyed treefrogs, Litoria serrata.

Woodhams DC, Bell SC, Kenyon N, Alford RA, Rollins-Smith LA.

Fungal Biol. 2012 Dec;116(12):1203-11. doi: 10.1016/j.funbio.2012.10.005. Epub 2012 Nov 10.


Gal4-based enhancer-trapping in the malaria mosquito Anopheles stephensi.

O'Brochta DA, Pilitt KL, Harrell RA 2nd, Aluvihare C, Alford RT.

G3 (Bethesda). 2012 Nov;2(11):1305-15. doi: 10.1534/g3.112.003582. Epub 2012 Nov 1.


Temperature alters reproductive life history patterns in Batrachochytrium dendrobatidis, a lethal pathogen associated with the global loss of amphibians.

Voyles J, Johnson LR, Briggs CJ, Cashins SD, Alford RA, Berger L, Skerratt LF, Speare R, Rosenblum EB.

Ecol Evol. 2012 Sep;2(9):2241-9. doi: 10.1002/ece3.334. Epub 2012 Aug 4.


Prevalence of Batrachochytrium dendrobatidis infection is extremely low in direct-developing Australian microhylids.

Hauselberger KF, Alford RA.

Dis Aquat Organ. 2012 Sep 12;100(3):191-200. doi: 10.3354/dao02494.


Medical genetics and genomics curricula focused on the laboratory specialties.

Fang P, Alford RL.

Genet Med. 2012 Mar;14(3):349. doi: 10.1038/gim.2011.61. No abstract available.


Ontogenetic shifts in a prey's chemical defences influence feeding responses of a snake predator.

Llewelyn J, Bell K, Schwarzkopf L, Alford RA, Shine R.

Oecologia. 2012 Aug;169(4):965-73. doi: 10.1007/s00442-012-2268-1.


Context-dependent symbioses and their potential roles in wildlife diseases.

Daskin JH, Alford RA.

Proc Biol Sci. 2012 Apr 22;279(1733):1457-65. doi: 10.1098/rspb.2011.2276. Epub 2012 Jan 11. Review.

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