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Items: 1 to 50 of 58

1.

A defined cultivation medium for Sulfolobus acidocaldarius.

Quehenberger J, Albersmeier A, Glatzel H, Hackl M, Kalinowski J, Spadiut O.

J Biotechnol. 2019 Aug 10;301:56-67. doi: 10.1016/j.jbiotec.2019.04.028. Epub 2019 May 31.

PMID:
31153897
2.

Early Response of Sulfolobus acidocaldarius to Nutrient Limitation.

Bischof LF, Haurat MF, Hoffmann L, Albersmeier A, Wolf J, Neu A, Pham TK, Albaum SP, Jakobi T, Schouten S, Neumann-Schaal M, Wright PC, Kalinowski J, Siebers B, Albers SV.

Front Microbiol. 2019 Jan 10;9:3201. doi: 10.3389/fmicb.2018.03201. eCollection 2018.

3.

Effect of UV irradiation on Sulfolobus acidocaldarius and involvement of the general transcription factor TFB3 in the early UV response.

Schult F, Le TN, Albersmeier A, Rauch B, Blumenkamp P, van der Does C, Goesmann A, Kalinowski J, Albers SV, Siebers B.

Nucleic Acids Res. 2018 Aug 21;46(14):7179-7192. doi: 10.1093/nar/gky527.

4.

Single-bacterial genomics validates rich and varied specialized metabolism of uncultivated Entotheonella sponge symbionts.

Mori T, Cahn JKB, Wilson MC, Meoded RA, Wiebach V, Martinez AFC, Helfrich EJN, Albersmeier A, Wibberg D, Dätwyler S, Keren R, Lavy A, Rückert C, Ilan M, Kalinowski J, Matsunaga S, Takeyama H, Piel J.

Proc Natl Acad Sci U S A. 2018 Feb 20;115(8):1718-1723. doi: 10.1073/pnas.1715496115. Epub 2018 Feb 8.

5.

Sulfolobus acidocaldarius Transports Pentoses via a Carbohydrate Uptake Transporter 2 (CUT2)-Type ABC Transporter and Metabolizes Them through the Aldolase-Independent Weimberg Pathway.

Wagner M, Shen L, Albersmeier A, van der Kolk N, Kim S, Cha J, Bräsen C, Kalinowski J, Siebers B, Albers SV.

Appl Environ Microbiol. 2018 Jan 17;84(3). pii: e01273-17. doi: 10.1128/AEM.01273-17. Print 2018 Feb 1.

6.

Oxidative Stickland reactions in an obligate aerobic organism - amino acid catabolism in the Crenarchaeon Sulfolobus solfataricus.

Stark H, Wolf J, Albersmeier A, Pham TK, Hofmann JD, Siebers B, Kalinowski J, Wright PC, Neumann-Schaal M, Schomburg D.

FEBS J. 2017 Jul;284(13):2078-2095. doi: 10.1111/febs.14105. Epub 2017 May 29.

7.

Genome-wide determination of transcription start sites reveals new insights into promoter structures in the actinomycete Corynebacterium glutamicum.

Albersmeier A, Pfeifer-Sancar K, Rückert C, Kalinowski J.

J Biotechnol. 2017 Sep 10;257:99-109. doi: 10.1016/j.jbiotec.2017.04.008. Epub 2017 Apr 13.

PMID:
28412515
8.

Whole Genome Sequencing of 39 Invasive Streptococcus pneumoniae Sequence Type 199 Isolates Revealed Switches from Serotype 19A to 15B.

Makarewicz O, Lucas M, Brandt C, Herrmann L, Albersmeier A, Rückert C, Blom J, Goesmann A, van der Linden M, Kalinowski J, Pletz MW.

PLoS One. 2017 Jan 3;12(1):e0169370. doi: 10.1371/journal.pone.0169370. eCollection 2017.

9.

Complete genome sequence of the actinomycete Actinoalloteichus hymeniacidonis type strain HPA 177T isolated from a marine sponge.

Schaffert L, Albersmeier A, Winkler A, Kalinowski J, Zotchev SB, Rückert C.

Stand Genomic Sci. 2016 Dec 20;11:91. doi: 10.1186/s40793-016-0213-3. eCollection 2016.

10.

A systems biology approach reveals major metabolic changes in the thermoacidophilic archaeon Sulfolobus solfataricus in response to the carbon source L-fucose versus D-glucose.

Wolf J, Stark H, Fafenrot K, Albersmeier A, Pham TK, Müller KB, Meyer BH, Hoffmann L, Shen L, Albaum SP, Kouril T, Schmidt-Hohagen K, Neumann-Schaal M, Bräsen C, Kalinowski J, Wright PC, Albers SV, Schomburg D, Siebers B.

Mol Microbiol. 2016 Dec;102(5):882-908. doi: 10.1111/mmi.13498. Epub 2016 Oct 27.

11.

Corrigendum to "Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant" [J. Biotechnol. 188 (2014) 136-137].

Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A.

J Biotechnol. 2016 Nov 10;237:35. doi: 10.1016/j.jbiotec.2016.08.020. Epub 2016 Sep 15. No abstract available.

PMID:
27642063
12.

High-throughput sequencing and graph-based cluster analysis facilitate microsatellite development from a highly complex genome.

Shah AB, Schielzeth H, Albersmeier A, Kalinowski J, Hoffman JI.

Ecol Evol. 2016 Jul 22;6(16):5718-27. doi: 10.1002/ece3.2305. eCollection 2016 Aug.

13.

Isolation and genome sequencing of four Arctic marine Psychrobacter strains exhibiting multicopper oxidase activity.

Moghadam MS, Albersmeier A, Winkler A, Cimmino L, Rise K, Hohmann-Marriott MF, Kalinowski J, Rückert C, Wentzel A, Lale R.

BMC Genomics. 2016 Feb 16;17:117. doi: 10.1186/s12864-016-2445-4.

14.

Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant.

Bremges A, Maus I, Belmann P, Eikmeyer F, Winkler A, Albersmeier A, Pühler A, Schlüter A, Sczyrba A.

Gigascience. 2015 Jul 30;4:33. doi: 10.1186/s13742-015-0073-6. eCollection 2015.

15.

Genome sequence of the soil bacterium Corynebacterium callunae type strain DSM 20147(T).

Persicke M, Albersmeier A, Bednarz H, Niehaus K, Kalinowski J, Rückert C.

Stand Genomic Sci. 2015 Jan 21;10:5. doi: 10.1186/1944-3277-10-5. eCollection 2015.

16.

Genome Sequence of the Urethral Isolate Pseudomonas aeruginosa RN21.

Wibberg D, Tielen P, Narten M, Schobert M, Blom J, Schatschneider S, Meyer AK, Neubauer R, Albersmeier A, Albaum S, Jahn M, Goesmann A, Vorhölter FJ, Pühler A, Jahn D.

Genome Announc. 2015 Jul 16;3(4). pii: e00788-15. doi: 10.1128/genomeA.00788-15.

17.

Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum.

Arnold M, Wibberg D, Blom J, Schatschneider S, Winkler A, Kutter Y, Rückert C, Albersmeier A, Albaum S, Goesmann A, Zange S, Heesemann J, Pühler A, Hogardt M, Vorhölter FJ.

Genome Announc. 2015 Jul 2;3(4). pii: e00680-15. doi: 10.1128/genomeA.00680-15.

18.

Complete Genome Sequence of Corynebacterium camporealensis DSM 44610, Isolated from the Milk of a Manchega Sheep with Subclinical Mastitis.

Rückert C, Albersmeier A, Winkler A, Tauch A.

Genome Announc. 2015 May 28;3(3). pii: e00572-15. doi: 10.1128/genomeA.00572-15.

19.

Complete Genome Sequence of Corynebacterium kutscheri DSM 20755, a Corynebacterial Type Strain with Remarkably Low G+C Content of Chromosomal DNA.

Rückert C, Albersmeier A, Winkler A, Tauch A.

Genome Announc. 2015 May 28;3(3). pii: e00571-15. doi: 10.1128/genomeA.00571-15.

20.

Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951).

Wibberg D, Alkhateeb RS, Winkler A, Albersmeier A, Schatschneider S, Albaum S, Niehaus K, Hublik G, Pühler A, Vorhölter FJ.

J Biotechnol. 2015 Jun 20;204:45-6. doi: 10.1016/j.jbiotec.2015.03.026. Epub 2015 Apr 9.

PMID:
25865276
21.

Complete Genome Sequence and Annotation of Corynebacterium singulare DSM 44357, Isolated from a Human Semen Specimen.

Merten M, Brinkrolf K, Albersmeier A, Kutter Y, Rückert C, Tauch A.

Genome Announc. 2015 Mar 26;3(2). pii: e00183-15. doi: 10.1128/genomeA.00183-15.

22.

Genome Sequence of the Urethral Catheter Isolate Pseudomonas aeruginosa MH19.

Vorhölter FJ, Tielen P, Wibberg D, Narten M, Schobert M, Tüpker R, Blom J, Schatschneider S, Winkler A, Albersmeier A, Goesmann A, Pühler A, Jahn D.

Genome Announc. 2015 Mar 12;3(2). pii: e00115-15. doi: 10.1128/genomeA.00115-15.

23.

Complete genome sequence of Streptomyces lividans TK24.

Rückert C, Albersmeier A, Busche T, Jaenicke S, Winkler A, Friðjónsson ÓH, Hreggviðsson GÓ, Lambert C, Badcock D, Bernaerts K, Anne J, Economou A, Kalinowski J.

J Biotechnol. 2015 Apr 10;199:21-2. doi: 10.1016/j.jbiotec.2015.02.004. Epub 2015 Feb 11.

PMID:
25680930
24.

Draft Genome Sequence of Pseudomonas aeruginosa Strain WS394, a Multidrug-Resistant and Highly Cytotoxic Wound Isolate from Chronic Ulcus Cruris.

Vorhölter FJ, Arnold M, Wibberg D, Blom J, Winkler A, Viehoever P, Albersmeier A, Goesmann A, Zange S, Heesemann J, Pühler A, Hogardt M.

Genome Announc. 2014 Dec 18;2(6). pii: e01325-14. doi: 10.1128/genomeA.01325-14.

25.

Complete genome sequence of the actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) consisting of a linear chromosome and one linear plasmid.

Ortseifen V, Winkler A, Albersmeier A, Wendler S, Pühler A, Kalinowski J, Rückert C.

J Biotechnol. 2015 Jan 20;194:81-3. doi: 10.1016/j.jbiotec.2014.11.036. Epub 2014 Dec 9.

PMID:
25499805
26.

Complete Genome Sequence of Corynebacterium ureicelerivorans DSM 45051, a Lipophilic and Urea-Splitting Isolate from the Blood Culture of a Septicemia Patient.

Tippelt A, Albersmeier A, Brinkrolf K, Rückert C, Fernández-Natal I, Soriano F, Tauch A.

Genome Announc. 2014 Nov 20;2(6). pii: e01211-14. doi: 10.1128/genomeA.01211-14.

27.

Complete Genome Sequence of Corynebacterium imitans DSM 44264, Isolated from a Five-Month-Old Boy with Suspected Pharyngeal Diphtheria.

Möllmann S, Albersmeier A, Rückert C, Tauch A.

Genome Announc. 2014 Nov 20;2(6). pii: e01210-14. doi: 10.1128/genomeA.01210-14.

28.

Dermabacter hominis: a usually daptomycin-resistant gram-positive organism infrequently isolated from human clinical samples.

Fernández-Natal I, Sáez-Nieto JA, Medina-Pascual MJ, Albersmeier A, Valdezate S, Guerra-Laso JM, Rodríguez H, Marrodán T, Parras T, Tauch A, Soriano F.

New Microbes New Infect. 2013 Dec;1(3):35-40. doi: 10.1002/2052-2975.31. Epub 2014 Jan 13.

29.

First draft genome sequence of the amylolytic Bacillus thermoamylovorans wild-type strain 1A1 isolated from a thermophilic biogas plant.

Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Pühler A, Schwarz WH, Liebl W, Schlüter A.

J Biotechnol. 2014 Dec 20;192 Pt A:154-5. doi: 10.1016/j.jbiotec.2014.09.017. Epub 2014 Sep 28.

PMID:
25270021
30.

GABenchToB: a genome assembly benchmark tuned on bacteria and benchtop sequencers.

Jünemann S, Prior K, Albersmeier A, Albaum S, Kalinowski J, Goesmann A, Stoye J, Harmsen D.

PLoS One. 2014 Sep 8;9(9):e107014. doi: 10.1371/journal.pone.0107014. eCollection 2014. Erratum in: PLoS One. 2015;10(3):e0118741.

31.

Genome sequence of the squalene-degrading bacterium Corynebacterium terpenotabidum type strain Y-11(T) (= DSM 44721(T)).

Rückert C, Albersmeier A, Al-Dilaimi A, Bednarz H, Niehaus K, Szczepanowski R, Kalinowski J.

Stand Genomic Sci. 2013 Dec 31;9(3):505-13. doi: 10.4056/sigs.4588337. eCollection 2014 Jun 15.

32.

Complete genome sequence of Corynebacterium vitaeruminis DSM 20294T, isolated from the cow rumen as a vitamin B producer.

Al-Dilaimi A, Albersmeier A, Kalinowski J, Rückert C.

J Biotechnol. 2014 Nov 10;189:70-1. doi: 10.1016/j.jbiotec.2014.08.036. Epub 2014 Sep 2.

PMID:
25193714
33.

Complete genome sequence of the actinobacterium Amycolatopsis japonica MG417-CF17(T) (=DSM 44213T) producing (S,S)-N,N'-ethylenediaminedisuccinic acid.

Stegmann E, Albersmeier A, Spohn M, Gert H, Weber T, Wohlleben W, Kalinowski J, Rückert C.

J Biotechnol. 2014 Nov 10;189:46-7. doi: 10.1016/j.jbiotec.2014.08.034. Epub 2014 Sep 3.

PMID:
25193710
34.

Complete genome sequence of Corynebacterium casei LMG S-19264T (=DSM 44701T), isolated from a smear-ripened cheese.

Walter F, Albersmeier A, Kalinowski J, Rückert C.

J Biotechnol. 2014 Nov 10;189:76-7. doi: 10.1016/j.jbiotec.2014.08.038. Epub 2014 Sep 2.

PMID:
25193709
35.

Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant.

Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A.

J Biotechnol. 2014 Oct 20;188:136-7. doi: 10.1016/j.jbiotec.2014.08.024. Epub 2014 Aug 28. Erratum in: J Biotechnol. 2016 Nov 10;237:35.

PMID:
25173616
36.

Complete genome sequence of Bacillus methanolicus MGA3, a thermotolerant amino acid producing methylotroph.

Irla M, Neshat A, Winkler A, Albersmeier A, Heggeset TM, Brautaset T, Kalinowski J, Wendisch VF, Rückert C.

J Biotechnol. 2014 Oct 20;188:110-1. doi: 10.1016/j.jbiotec.2014.08.013. Epub 2014 Aug 22.

PMID:
25152427
37.

Mycolic Acid Biosynthesis Genes in the Genome Sequence of Corynebacterium atypicum DSM 44849.

Tippelt A, Möllmann S, Albersmeier A, Jaenicke S, Rückert C, Tauch A.

Genome Announc. 2014 Aug 21;2(4). pii: e00845-14. doi: 10.1128/genomeA.00845-14.

38.

Draft Genome Sequence of the Multidrug-Resistant Clinical Isolate Dermabacter hominis 1368.

Albersmeier A, Bomholt C, Glaub A, Rückert C, Soriano F, Fernández-Natal I, Tauch A.

Genome Announc. 2014 Jul 24;2(4). pii: e00728-14. doi: 10.1128/genomeA.00728-14.

39.

Genomics of sponge-associated Streptomyces spp. closely related to Streptomyces albus J1074: insights into marine adaptation and secondary metabolite biosynthesis potential.

Ian E, Malko DB, Sekurova ON, Bredholt H, Rückert C, Borisova ME, Albersmeier A, Kalinowski J, Gelfand MS, Zotchev SB.

PLoS One. 2014 May 12;9(5):e96719. doi: 10.1371/journal.pone.0096719. eCollection 2014.

40.

Complete genome sequence of the actinobacterium Actinoplanes friuliensis HAG 010964, producer of the lipopeptide antibiotic friulimycin.

Rückert C, Szczepanowski R, Albersmeier A, Goesmann A, Fischer N, Steinkämper A, Pühler A, Biener R, Schwartz D, Kalinowski J.

J Biotechnol. 2014 May 20;178:41-2. doi: 10.1016/j.jbiotec.2014.03.011. Epub 2014 Mar 15.

PMID:
24637369
41.

Genome Sequence of the Acute Urethral Catheter Isolate Pseudomonas aeruginosa MH38.

Wibberg D, Tielen P, Blom J, Rosin N, Schobert M, Tüpker R, Schatschneider S, Spilker D, Albersmeier A, Goesmann A, Vorhölter FJ, Pühler A, Jahn D.

Genome Announc. 2014 Mar 13;2(2). pii: e00161-14. doi: 10.1128/genomeA.00161-14.

42.

Complete Genome Sequence of Corynebacterium falsenii DSM 44353 To Study the Evolution of Corynebacterium Cluster 3 Species.

Glaub A, Bomholt C, Gravermann K, Brinkrolf K, Albersmeier A, Rückert C, Tauch A.

Genome Announc. 2014 Mar 6;2(2). pii: e00158-14. doi: 10.1128/genomeA.00158-14.

43.

Genome sequence of the marine bacterium Corynebacterium maris type strain Coryn-1(T) (= DSM 45190(T)).

Schaffert L, Albersmeier A, Bednarz H, Niehaus K, Kalinowski J, Rückert C.

Stand Genomic Sci. 2013 Jul 30;8(3):516-24. doi: 10.4056/sigs.4057796. eCollection 2013 Jul 30.

44.

Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter Infection.

Tielen P, Wibberg D, Blom J, Rosin N, Meyer AK, Bunk B, Schobert M, Tüpker R, Schatschneider S, Rückert C, Albersmeier A, Goesmann A, Vorhölter FJ, Jahn D, Pühler A.

Genome Announc. 2014 Jan 23;2(1). pii: e01174-13. doi: 10.1128/genomeA.01174-13.

45.

Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.

Bogen C, Al-Dilaimi A, Albersmeier A, Wichmann J, Grundmann M, Rupp O, Lauersen KJ, Blifernez-Klassen O, Kalinowski J, Goesmann A, Mussgnug JH, Kruse O.

BMC Genomics. 2013 Dec 28;14:926. doi: 10.1186/1471-2164-14-926.

46.

Draft genome sequence of Sinorhizobium meliloti RU11/001, a model organism for flagellum structure, motility and chemotaxis.

Wibberg D, Blom J, Rückert C, Winkler A, Albersmeier A, Pühler A, Schlüter A, Scharf BE.

J Biotechnol. 2013 Dec;168(4):731-3. doi: 10.1016/j.jbiotec.2013.10.015. Epub 2013 Oct 29.

PMID:
24184089
47.

Complete genome sequence of the kirromycin producer Streptomyces collinus Tü 365 consisting of a linear chromosome and two linear plasmids.

Rückert C, Szczepanowski R, Albersmeier A, Goesmann A, Iftime D, Musiol EM, Blin K, Wohlleben W, Pühler A, Kalinowski J, Weber T.

J Biotechnol. 2013 Dec;168(4):739-40. doi: 10.1016/j.jbiotec.2013.10.004. Epub 2013 Oct 16.

PMID:
24140291
48.

Whole-Genome Sequence of the Clinical Strain Corynebacterium argentoratense DSM 44202, Isolated from a Human Throat Specimen.

Bomholt C, Glaub A, Gravermann K, Albersmeier A, Brinkrolf K, Rückert C, Tauch A.

Genome Announc. 2013 Oct 3;1(5). pii: e00793-13. doi: 10.1128/genomeA.00793-13.

49.

Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation.

Koeck DE, Wibberg D, Koellmeier T, Blom J, Jaenicke S, Winkler A, Albersmeier A, Zverlov VV, Pühler A, Schwarz WH, Schlüter A.

J Biotechnol. 2013 Oct 10;168(1):62-3. doi: 10.1016/j.jbiotec.2013.08.011. Epub 2013 Aug 19.

PMID:
23968723
50.

Complete Genome Sequence of Corynebacterium urealyticum Strain DSM 7111, Isolated from a 9-Year-Old Patient with Alkaline-Encrusted Cystitis.

Guimarães LC, Soares SC, Albersmeier A, Blom J, Jaenicke S, Azevedo V, Soriano F, Tauch A, Trost E.

Genome Announc. 2013 May 23;1(3). pii: e00264-13. doi: 10.1128/genomeA.00264-13.

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