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Items: 1 to 50 of 180

1.

Functional insights into the infective larval stage of Anisakis simplex s.s., Anisakis pegreffii and their hybrids based on gene expression patterns.

Llorens C, Arcos SC, Robertson L, Ramos R, Futami R, Soriano B, Ciordia S, Careche M, González-Muñoz M, Jiménez-Ruiz Y, Carballeda-Sangiao N, Moneo I, Albar JP, Blaxter M, Navas A.

BMC Genomics. 2018 Aug 7;19(1):592. doi: 10.1186/s12864-018-4970-9.

2.

PACOM: A Versatile Tool for Integrating, Filtering, Visualizing, and Comparing Multiple Large Mass Spectrometry Proteomics Data Sets.

Martínez-Bartolomé S, Medina-Aunon JA, López-García MÁ, González-Tejedo C, Prieto G, Navajas R, Salazar-Donate E, Fernández-Costa C, Yates JR 3rd, Albar JP.

J Proteome Res. 2018 Apr 6;17(4):1547-1558. doi: 10.1021/acs.jproteome.7b00858. Epub 2018 Mar 28.

PMID:
29558135
3.

Sorting nexin 27 interactome in T-lymphocytes identifies zona occludens-2 dynamic redistribution at the immune synapse.

Tello-Lafoz M, Martínez-Martínez G, Rodríguez-Rodríguez C, Albar JP, Huse M, Gharbi S, Merida I.

Traffic. 2017 Aug;18(8):491-504. doi: 10.1111/tra.12492. Epub 2017 Jun 29.

4.

Corrigendum: A DERL3-associated defect in the degradation of SLC2A1 mediates the Warburg effect.

Lopez-Serra P, Marcilla M, Villanueva A, Ramos-Fernandez A, Palau A, Leal L, Wahi JE, Setien-Baranda F, Szczesna K, Moutinho C, Martinez-Cardus A, Heyn H, Sandoval J, Puertas S, Vidal A, Sanjuan X, Martinez-Balibrea E, Viñals F, Perales JC, Bramsem JB, Ørntoft TF, Andersen CL, Tabernero J, McDermott U, Boxer MB, Vander Heiden MG, Albar JP, Esteller M.

Nat Commun. 2016 Nov 2;7:13467. doi: 10.1038/ncomms13467. No abstract available.

5.

Comparative Analysis of the Endogenous Peptidomes Displayed by HLA-B*27 and Mamu-B*08: Two MHC Class I Alleles Associated with Elite Control of HIV/SIV Infection.

Marcilla M, Alvarez I, Ramos-Fernández A, Lombardía M, Paradela A, Albar JP.

J Proteome Res. 2016 Mar 4;15(3):1059-69. doi: 10.1021/acs.jproteome.5b01146. Epub 2016 Feb 8.

PMID:
26811146
6.

Proteogenomics Dashboard for the Human Proteome Project.

Tabas-Madrid D, Alves-Cruzeiro J, Segura V, Guruceaga E, Vialas V, Prieto G, García C, Corrales FJ, Albar JP, Pascual-Montano A.

J Proteome Res. 2015 Sep 4;14(9):3738-49. doi: 10.1021/acs.jproteome.5b00466. Epub 2015 Jul 16.

PMID:
26144527
7.

Quest for Missing Proteins: Update 2015 on Chromosome-Centric Human Proteome Project.

Horvatovich P, Lundberg EK, Chen YJ, Sung TY, He F, Nice EC, Goode RJ, Yu S, Ranganathan S, Baker MS, Domont GB, Velasquez E, Li D, Liu S, Wang Q, He QY, Menon R, Guan Y, Corrales FJ, Segura V, Casal JI, Pascual-Montano A, Albar JP, Fuentes M, Gonzalez-Gonzalez M, Diez P, Ibarrola N, Degano RM, Mohammed Y, Borchers CH, Urbani A, Soggiu A, Yamamoto T, Salekdeh GH, Archakov A, Ponomarenko E, Lisitsa A, Lichti CF, Mostovenko E, Kroes RA, Rezeli M, Végvári Á, Fehniger TE, Bischoff R, Vizcaíno JA, Deutsch EW, Lane L, Nilsson CL, Marko-Varga G, Omenn GS, Jeong SK, Lim JS, Paik YK, Hancock WS.

J Proteome Res. 2015 Sep 4;14(9):3415-31. doi: 10.1021/pr5013009. Epub 2015 Jul 23.

8.

Multicenter experiment for quality control of peptide-centric LC-MS/MS analysis - A longitudinal performance assessment with nLC coupled to orbitrap MS analyzers.

Campos A, Díaz R, Martínez-Bartolomé S, Sierra J, Gallardo O, Sabidó E, López-Lucendo M, Ignacio Casal J, Pasquarello C, Scherl A, Chiva C, Borras E, Odena A, Elortza F, Azkargorta M, Ibarrola N, Canals F, Albar JP, Oliveira E.

J Proteomics. 2015 Sep 8;127(Pt B):264-74. doi: 10.1016/j.jprot.2015.05.012. Epub 2015 May 14.

PMID:
25982386
9.

Cyr61 as mediator of Src signaling in triple negative breast cancer cells.

Sánchez-Bailón MP, Calcabrini A, Mayoral-Varo V, Molinari A, Wagner KU, Losada JP, Ciordia S, Albar JP, Martín-Pérez J.

Oncotarget. 2015 May 30;6(15):13520-38.

10.

Development of data representation standards by the human proteome organization proteomics standards initiative.

Deutsch EW, Albar JP, Binz PA, Eisenacher M, Jones AR, Mayer G, Omenn GS, Orchard S, Vizcaíno JA, Hermjakob H.

J Am Med Inform Assoc. 2015 May;22(3):495-506. doi: 10.1093/jamia/ocv001. Epub 2015 Feb 28. Review.

11.

The Spanish biology/disease initiative within the human proteome project: Application to rheumatic diseases.

Ruiz-Romero C, Calamia V, Albar JP, Casal JI, Corrales FJ, Fernández-Puente P, Gil C, Mateos J, Vivanco F, Blanco FJ.

J Proteomics. 2015 Sep 8;127(Pt B):406-13. doi: 10.1016/j.jprot.2015.01.023. Epub 2015 Feb 14. Review.

PMID:
25686859
12.

A public repository for mass spectrometry imaging data.

Römpp A, Wang R, Albar JP, Urbani A, Hermjakob H, Spengler B, Vizcaíno JA.

Anal Bioanal Chem. 2015 Mar;407(8):2027-33. doi: 10.1007/s00216-014-8357-8. No abstract available.

13.

Discussion point: reporting guidelines for mass spectrometry imaging.

McDonnell LA, Römpp A, Balluff B, Heeren RM, Albar JP, Andrén PE, Corthals GL, Walch A, Stoeckli M.

Anal Bioanal Chem. 2015 Mar;407(8):2035-45. doi: 10.1007/s00216-014-8322-6. No abstract available.

PMID:
25432304
14.

Meeting new challenges: The 2014 HUPO-PSI/COSMOS Workshop: 13-15 April 2014, Frankfurt, Germany.

Orchard S, Albar JP, Binz PA, Kettner C, Jones AR, Salek RM, Vizcaino JA, Deutsch EW, Hermjakob H.

Proteomics. 2014 Nov;14(21-22):2363-8. doi: 10.1002/pmic.201470164. Epub 2014 Oct 9.

PMID:
25297050
15.

Response to copper of Acidithiobacillus ferrooxidans ATCC 23270 grown in elemental sulfur.

Almárcegui RJ, Navarro CA, Paradela A, Albar JP, von Bernath D, Jerez CA.

Res Microbiol. 2014 Nov;165(9):761-72. doi: 10.1016/j.resmic.2014.07.005. Epub 2014 Jul 18.

PMID:
25041950
16.

A novel CD44-binding peptide from the pro-matrix metalloproteinase-9 hemopexin domain impairs adhesion and migration of chronic lymphocytic leukemia (CLL) cells.

Ugarte-Berzal E, Bailón E, Amigo-Jiménez I, Albar JP, García-Marco JA, García-Pardo A.

J Biol Chem. 2014 May 30;289(22):15340-9. doi: 10.1074/jbc.M114.559187. Epub 2014 Apr 16.

17.

ProteomeXchange provides globally coordinated proteomics data submission and dissemination.

Vizcaíno JA, Deutsch EW, Wang R, Csordas A, Reisinger F, Ríos D, Dianes JA, Sun Z, Farrah T, Bandeira N, Binz PA, Xenarios I, Eisenacher M, Mayer G, Gatto L, Campos A, Chalkley RJ, Kraus HJ, Albar JP, Martinez-Bartolomé S, Apweiler R, Omenn GS, Martens L, Jones AR, Hermjakob H.

Nat Biotechnol. 2014 Mar;32(3):223-6. doi: 10.1038/nbt.2839. No abstract available.

18.

Proteomic profiling and characterization of differential allergens in the nematodes Anisakis simplex sensu stricto and A. pegreffii.

Arcos SC, Ciordia S, Roberston L, Zapico I, Jiménez-Ruiz Y, Gonzalez-Muñoz M, Moneo I, Carballeda-Sangiao N, Rodriguez-Mahillo A, Albar JP, Navas A.

Proteomics. 2014 Jun;14(12):1547-68. doi: 10.1002/pmic.201300529. Epub 2014 May 21.

PMID:
24723494
19.

A DERL3-associated defect in the degradation of SLC2A1 mediates the Warburg effect.

Lopez-Serra P, Marcilla M, Villanueva A, Ramos-Fernandez A, Palau A, Leal L, Wahi JE, Setien-Baranda F, Szczesna K, Moutinho C, Martinez-Cardus A, Heyn H, Sandoval J, Puertas S, Vidal A, Sanjuan X, Martinez-Balibrea E, Viñals F, Perales JC, Bramsem JB, Ørntoft TF, Andersen CL, Tabernero J, McDermott U, Boxer MB, Vander Heiden MG, Albar JP, Esteller M.

Nat Commun. 2014 Apr 3;5:3608. doi: 10.1038/ncomms4608. Erratum in: Nat Commun. 2016 Nov 02;7:13467.

20.

Understanding the antimicrobial mechanism of TiO₂-based nanocomposite films in a pathogenic bacterium.

Kubacka A, Diez MS, Rojo D, Bargiela R, Ciordia S, Zapico I, Albar JP, Barbas C, Martins dos Santos VA, Fernández-García M, Ferrer M.

Sci Rep. 2014 Feb 19;4:4134. doi: 10.1038/srep04134.

21.

β-Arrestin-1 mediates the TCR-triggered re-routing of distal receptors to the immunological synapse by a PKC-mediated mechanism.

Fernández-Arenas E, Calleja E, Martínez-Martín N, Gharbi SI, Navajas R, García-Medel N, Penela P, Alcamí A, Mayor F Jr, Albar JP, Alarcón B.

EMBO J. 2014 Mar 18;33(6):559-77. doi: 10.1002/embj.201386022. Epub 2014 Feb 6.

22.

Halorhabdus tiamatea: proteogenomics and glycosidase activity measurements identify the first cultivated euryarchaeon from a deep-sea anoxic brine lake as potential polysaccharide degrader.

Werner J, Ferrer M, Michel G, Mann AJ, Huang S, Juarez S, Ciordia S, Albar JP, Alcaide M, La Cono V, Yakimov MM, Antunes A, Taborda M, da Costa MS, Hai T, Glöckner FO, Golyshina OV, Golyshin PN, Teeling H; MAMBA Consortium.

Environ Microbiol. 2014 Aug;16(8):2525-37. doi: 10.1111/1462-2920.12393. Epub 2014 Feb 27.

23.

New copper resistance determinants in the extremophile acidithiobacillus ferrooxidans: a quantitative proteomic analysis.

Almárcegui RJ, Navarro CA, Paradela A, Albar JP, von Bernath D, Jerez CA.

J Proteome Res. 2014 Feb 7;13(2):946-60. doi: 10.1021/pr4009833. Epub 2014 Jan 8.

PMID:
24380576
24.

Increased diversity of the HLA-B40 ligandome by the presentation of peptides phosphorylated at their main anchor residue.

Marcilla M, Alpízar A, Lombardía M, Ramos-Fernandez A, Ramos M, Albar JP.

Mol Cell Proteomics. 2014 Feb;13(2):462-74. doi: 10.1074/mcp.M113.034314. Epub 2013 Dec 23.

25.

The chromosome-centric human proteome project at FEBS Congress.

Ponomarenko E, Baranova A, Lisitsa A, Albar JP, Archakov A.

Proteomics. 2014 Feb;14(2-3):147-52. doi: 10.1002/pmic.201300373.

PMID:
24285571
26.

Standardization and quality control in proteomics.

Albar JP, Canals F.

J Proteomics. 2013 Dec 16;95:1-2. doi: 10.1016/j.jprot.2013.11.002. No abstract available.

PMID:
24275454
27.

Proteomic analysis reveals heat shock protein 70 has a key role in polycythemia Vera.

Gallardo M, Barrio S, Fernandez M, Paradela A, Arenas A, Toldos O, Ayala R, Albizua E, Jimenez A, Redondo S, Garcia-Martin RM, Gilsanz F, Albar JP, Martinez-Lopez J.

Mol Cancer. 2013 Nov 19;12:142. doi: 10.1186/1476-4598-12-142.

28.

Surfing transcriptomic landscapes. A step beyond the annotation of chromosome 16 proteome.

Segura V, Medina-Aunon JA, Mora MI, Martínez-Bartolomé S, Abian J, Aloria K, Antúnez O, Arizmendi JM, Azkargorta M, Barceló-Batllori S, Beaskoetxea J, Bech-Serra JJ, Blanco F, Monteiro MB, Cáceres D, Canals F, Carrascal M, Casal JI, Clemente F, Colomé N, Dasilva N, Díaz P, Elortza F, Fernández-Puente P, Fuentes M, Gallardo O, Gharbi SI, Gil C, González-Tejedo C, Hernáez ML, Lombardía M, Lopez-Lucendo M, Marcilla M, Mato JM, Mendes M, Oliveira E, Orera I, Pascual-Montano A, Prieto G, Ruiz-Romero C, Sánchez del Pino MM, Tabas-Madrid D, Valero ML, Vialas V, Villanueva J, Albar JP, Corrales FJ.

J Proteome Res. 2014 Jan 3;13(1):158-72. doi: 10.1021/pr400721r. Epub 2013 Nov 5.

PMID:
24138474
29.

The Minimal Information about a Proteomics Experiment (MIAPE) from the Proteomics Standards Initiative.

Martínez-Bartolomé S, Binz PA, Albar JP.

Methods Mol Biol. 2014;1072:765-80. doi: 10.1007/978-1-62703-631-3_53.

PMID:
24136562
30.

Proteomics identifies ubiquitin-proteasome targets and new roles for chromatin-remodeling in the Arabidopsis response to phosphate starvation.

Iglesias J, Trigueros M, Rojas-Triana M, Fernández M, Albar JP, Bustos R, Paz-Ares J, Rubio V.

J Proteomics. 2013 Dec 6;94:1-22. doi: 10.1016/j.jprot.2013.08.015. Epub 2013 Sep 5.

PMID:
24012629
31.

Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica.

Kube M, Chernikova TN, Al-Ramahi Y, Beloqui A, Lopez-Cortez N, Guazzaroni ME, Heipieper HJ, Klages S, Kotsyurbenko OR, Langer I, Nechitaylo TY, Lünsdorf H, Fernández M, Juárez S, Ciordia S, Singer A, Kagan O, Egorova O, Petit PA, Stogios P, Kim Y, Tchigvintsev A, Flick R, Denaro R, Genovese M, Albar JP, Reva ON, Martínez-Gomariz M, Tran H, Ferrer M, Savchenko A, Yakunin AF, Yakimov MM, Golyshina OV, Reinhardt R, Golyshin PN.

Nat Commun. 2013;4:2156. doi: 10.1038/ncomms3156.

32.

Biochemical Characterization of Hypothetical Proteins from Helicobacter pylori.

Choi HP, Juarez S, Ciordia S, Fernandez M, Bargiela R, Albar JP, Mazumdar V, Anton BP, Kasif S, Ferrer M, Steffen M.

PLoS One. 2013 Jun 18;8(6):e66605. doi: 10.1371/journal.pone.0066605. Print 2013.

33.

iAnn: an event sharing platform for the life sciences.

Jimenez RC, Albar JP, Bhak J, Blatter MC, Blicher T, Brazas MD, Brooksbank C, Budd A, De Las Rivas J, Dreyer J, van Driel MA, Dunn MJ, Fernandes PL, van Gelder CW, Hermjakob H, Ioannidis V, Judge DP, Kahlem P, Korpelainen E, Kraus HJ, Loveland J, Mayer C, McDowall J, Moran F, Mulder N, Nyronen T, Rother K, Salazar GA, Schneider R, Via A, Villaveces JM, Yu P, Schneider MV, Attwood TK, Corpas M.

Bioinformatics. 2013 Aug 1;29(15):1919-21. doi: 10.1093/bioinformatics/btt306. Epub 2013 Jun 5.

34.

The mzQuantML data standard for mass spectrometry-based quantitative studies in proteomics.

Walzer M, Qi D, Mayer G, Uszkoreit J, Eisenacher M, Sachsenberg T, Gonzalez-Galarza FF, Fan J, Bessant C, Deutsch EW, Reisinger F, Vizcaíno JA, Medina-Aunon JA, Albar JP, Kohlbacher O, Jones AR.

Mol Cell Proteomics. 2013 Aug;12(8):2332-40. doi: 10.1074/mcp.O113.028506. Epub 2013 Apr 18.

35.

Transient PKCα shuttling to the immunological synapse is governed by DGKζ and regulates L-selectin shedding.

Gharbi SI, Avila-Flores A, Soutar D, Orive A, Koretzky GA, Albar JP, Mérida I.

J Cell Sci. 2013 May 15;126(Pt 10):2176-86. doi: 10.1242/jcs.118513. Epub 2013 Mar 22.

36.

Guidelines for reporting quantitative mass spectrometry based experiments in proteomics.

Martínez-Bartolomé S, Deutsch EW, Binz PA, Jones AR, Eisenacher M, Mayer G, Campos A, Canals F, Bech-Serra JJ, Carrascal M, Gay M, Paradela A, Navajas R, Marcilla M, Hernáez ML, Gutiérrez-Blázquez MD, Velarde LF, Aloria K, Beaskoetxea J, Medina-Aunon JA, Albar JP.

J Proteomics. 2013 Dec 16;95:84-8. doi: 10.1016/j.jprot.2013.02.026. Epub 2013 Mar 14.

PMID:
23500130
37.

A guide for integration of proteomic data standards into laboratory workflows.

Medina-Aunon JA, Krishna R, Ghali F, Albar JP, Jones AJ.

Proteomics. 2013 Feb;13(3-4):480-92. doi: 10.1002/pmic.201200268. Epub 2013 Jan 15. Review.

PMID:
23319203
38.

Quantitative proteomics: A strategic ally to map protein interaction networks.

Marcilla M, Albar JP.

IUBMB Life. 2013 Jan;65(1):9-16. doi: 10.1002/iub.1081. Review.

39.

Spanish human proteome project: dissection of chromosome 16.

Segura V, Medina-Aunon JA, Guruceaga E, Gharbi SI, González-Tejedo C, Sánchez del Pino MM, Canals F, Fuentes M, Casal JI, Martínez-Bartolomé S, Elortza F, Mato JM, Arizmendi JM, Abian J, Oliveira E, Gil C, Vivanco F, Blanco F, Albar JP, Corrales FJ.

J Proteome Res. 2013 Jan 4;12(1):112-22. doi: 10.1021/pr300898u. Epub 2012 Dec 12.

PMID:
23234512
40.

A 17-residue sequence from the matrix metalloproteinase-9 (MMP-9) hemopexin domain binds α4β1 integrin and inhibits MMP-9-induced functions in chronic lymphocytic leukemia B cells.

Ugarte-Berzal E, Bailón E, Amigo-Jiménez I, Vituri CL, del Cerro MH, Terol MJ, Albar JP, Rivas G, García-Marco JA, García-Pardo A.

J Biol Chem. 2012 Aug 10;287(33):27601-13. doi: 10.1074/jbc.M112.354670. Epub 2012 Jun 22.

41.

Five years later: the current status of the use of proteomics and transcriptomics in EMF research.

Leszczynski D, de Pomerai D, Koczan D, Stoll D, Franke H, Albar JP.

Proteomics. 2012 Aug;12(15-16):2493-509. doi: 10.1002/pmic.201200122. Review.

PMID:
22707462
42.

Comprehensive analysis of gluten in processed foods using a new extraction method and a competitive ELISA based on the R5 antibody.

Mena MC, Lombardía M, Hernando A, Méndez E, Albar JP.

Talanta. 2012 Mar 15;91:33-40. doi: 10.1016/j.talanta.2011.12.073. Epub 2012 Jan 18.

PMID:
22365676
43.

2D DIGE for the analysis of RAMOS cells subproteomes.

Fernández M, Albar JP.

Methods Mol Biol. 2012;854:239-52. doi: 10.1007/978-1-61779-573-2_17.

PMID:
22311765
44.

From proteomics data representation to public data flow: a report on the HUPO-PSI workshop September 2011, Geneva, Switzerland.

Orchard S, Albar JP, Deutsch EW, Eisenacher M, Binz PA, Martinez-Bartolomé S, Vizcaíno JA, Hermjakob H.

Proteomics. 2012 Feb;12(3):351-5. doi: 10.1002/pmic.201290016.

PMID:
22290802
45.

Enabling BioSharing - a report on the Annual Spring Workshop of the HUPO-PSI April 11-13, 2011, EMBL-Heidelberg, Germany.

Orchard S, Albar JP, Deutsch EW, Eisenacher M, Vizcaíno JA, Hermjakob H.

Proteomics. 2011 Nov;11(22):4284-90. doi: 10.1002/pmic.201190117.

46.

The ProteoRed MIAPE web toolkit: a user-friendly framework to connect and share proteomics standards.

Medina-Aunon JA, Martínez-Bartolomé S, López-García MA, Salazar E, Navajas R, Jones AR, Paradela A, Albar JP.

Mol Cell Proteomics. 2011 Oct;10(10):M111.008334. doi: 10.1074/mcp.M111.008334.

47.

LC8 dynein light chain (DYNLL1) binds to the C-terminal domain of ATM-interacting protein (ATMIN/ASCIZ) and regulates its subcellular localization.

Rapali P, García-Mayoral MF, Martínez-Moreno M, Tárnok K, Schlett K, Albar JP, Bruix M, Nyitray L, Rodriguez-Crespo I.

Biochem Biophys Res Commun. 2011 Oct 28;414(3):493-8. doi: 10.1016/j.bbrc.2011.09.093. Epub 2011 Sep 24.

PMID:
21971545
48.

Diacylglycerol kinase ζ controls diacylglycerol metabolism at the immunological synapse.

Gharbi SI, Rincón E, Avila-Flores A, Torres-Ayuso P, Almena M, Cobos MA, Albar JP, Mérida I.

Mol Biol Cell. 2011 Nov;22(22):4406-14. doi: 10.1091/mbc.E11-03-0247. Epub 2011 Sep 21.

49.

SPARC promotes cathepsin B-mediated melanoma invasiveness through a collagen I/α2β1 integrin axis.

Girotti MR, Fernández M, López JA, Camafeita E, Fernández EA, Albar JP, Benedetti LG, Valacco MP, Brekken RA, Podhajcer OL, Llera AS.

J Invest Dermatol. 2011 Dec;131(12):2438-47. doi: 10.1038/jid.2011.239. Epub 2011 Aug 18.

50.

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