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Items: 1 to 50 of 62

1.

Oikopleura dioica: An Emergent Chordate Model to Study the Impact of Gene Loss on the Evolution of the Mechanisms of Development.

Ferrández-Roldán A, Martí-Solans J, Cañestro C, Albalat R.

Results Probl Cell Differ. 2019;68:63-105. doi: 10.1007/978-3-030-23459-1_4.

PMID:
31598853
2.

The evolutionary landscape of the Rab family in chordates.

Coppola U, Ristoratore F, Albalat R, D'Aniello S.

Cell Mol Life Sci. 2019 Oct;76(20):4117-4130. doi: 10.1007/s00018-019-03103-7. Epub 2019 Apr 26.

PMID:
31028425
3.

Amphioxus functional genomics and the origins of vertebrate gene regulation.

Marlétaz F, Firbas PN, Maeso I, Tena JJ, Bogdanovic O, Perry M, Wyatt CDR, de la Calle-Mustienes E, Bertrand S, Burguera D, Acemel RD, van Heeringen SJ, Naranjo S, Herrera-Ubeda C, Skvortsova K, Jimenez-Gancedo S, Aldea D, Marquez Y, Buono L, Kozmikova I, Permanyer J, Louis A, Albuixech-Crespo B, Le Petillon Y, Leon A, Subirana L, Balwierz PJ, Duckett PE, Farahani E, Aury JM, Mangenot S, Wincker P, Albalat R, Benito-Gutiérrez È, Cañestro C, Castro F, D'Aniello S, Ferrier DEK, Huang S, Laudet V, Marais GAB, Pontarotti P, Schubert M, Seitz H, Somorjai I, Takahashi T, Mirabeau O, Xu A, Yu JK, Carninci P, Martinez-Morales JR, Crollius HR, Kozmik Z, Weirauch MT, Garcia-Fernàndez J, Lister R, Lenhard B, Holland PWH, Escriva H, Gómez-Skarmeta JL, Irimia M.

Nature. 2018 Dec;564(7734):64-70. doi: 10.1038/s41586-018-0734-6. Epub 2018 Nov 21.

4.

Metallothioneins of the urochordate Oikopleura dioica have Cys-rich tandem repeats, large size and cadmium-binding preference.

Calatayud S, Garcia-Risco M, Rojas NS, Espinosa-Sánchez L, Artime S, Palacios Ò, Cañestro C, Albalat R.

Metallomics. 2018 Nov 14;10(11):1585-1594. doi: 10.1039/c8mt00177d.

5.

Metal binding functions of metallothioneins in the slug Arion vulgaris differ from metal-specific isoforms of terrestrial snails.

Dvorak M, Lackner R, Niederwanger M, Rotondo C, Schnegg R, Ladurner P, Pedrini-Martha V, Salvenmoser W, Kremser L, Lindner H, García-Risco M, Calatayud S, Albalat R, Palacios Ò, Capdevila M, Dallinger R.

Metallomics. 2018 Nov 14;10(11):1638-1654. doi: 10.1039/c8mt00215k.

PMID:
30284571
6.

Diatom bloom-derived biotoxins cause aberrant development and gene expression in the appendicularian chordate Oikopleura dioica.

Torres-Águila NP, Martí-Solans J, Ferrández-Roldán A, Almazán A, Roncalli V, D'Aniello S, Romano G, Palumbo A, Albalat R, Cañestro C.

Commun Biol. 2018 Aug 24;1:121. doi: 10.1038/s42003-018-0127-2. eCollection 2018.

7.

Developmental atlas of appendicularian Oikopleura dioica actins provides new insights into the evolution of the notochord and the cardio-paraxial muscle in chordates.

Almazán A, Ferrández-Roldán A, Albalat R, Cañestro C.

Dev Biol. 2019 Apr 15;448(2):260-270. doi: 10.1016/j.ydbio.2018.09.003. Epub 2018 Sep 11.

PMID:
30217598
8.

Wnt evolution and function shuffling in liberal and conservative chordate genomes.

Somorjai IML, Martí-Solans J, Diaz-Gracia M, Nishida H, Imai KS, Escrivà H, Cañestro C, Albalat R.

Genome Biol. 2018 Jul 25;19(1):98. doi: 10.1186/s13059-018-1468-3.

9.

The ancestral retinoic acid receptor was a low-affinity sensor triggering neuronal differentiation.

Handberg-Thorsager M, Gutierrez-Mazariegos J, Arold ST, Kumar Nadendla E, Bertucci PY, Germain P, Tomançak P, Pierzchalski K, Jones JW, Albalat R, Kane MA, Bourguet W, Laudet V, Arendt D, Schubert M.

Sci Adv. 2018 Feb 21;4(2):eaao1261. doi: 10.1126/sciadv.aao1261. eCollection 2018 Feb.

10.

Biomphalaria glabrata Metallothionein: Lacking Metal Specificity of the Protein and Missing Gene Upregulation Suggest Metal Sequestration by Exchange Instead of through Selective Binding.

Niederwanger M, Calatayud S, Zerbe O, Atrian S, Albalat R, Capdevila M, Palacios Ò, Dallinger R.

Int J Mol Sci. 2017 Jul 6;18(7). pii: E1457. doi: 10.3390/ijms18071457.

11.

Coelimination and Survival in Gene Network Evolution: Dismantling the RA-Signaling in a Chordate.

Martí-Solans J, Belyaeva OV, Torres-Aguila NP, Kedishvili NY, Albalat R, Cañestro C.

Mol Biol Evol. 2016 Sep;33(9):2401-16. doi: 10.1093/molbev/msw118. Epub 2016 Jul 12.

12.

Evolution by gene loss.

Albalat R, Cañestro C.

Nat Rev Genet. 2016 Jul;17(7):379-91. doi: 10.1038/nrg.2016.39. Epub 2016 Apr 18. Review.

PMID:
27087500
13.

Oikopleura dioica culturing made easy: a low-cost facility for an emerging animal model in EvoDevo.

Martí-Solans J, Ferrández-Roldán A, Godoy-Marín H, Badia-Ramentol J, Torres-Aguila NP, Rodríguez-Marí A, Bouquet JM, Chourrout D, Thompson EM, Albalat R, Cañestro C.

Genesis. 2015 Jan;53(1):183-93. doi: 10.1002/dvg.22800. Epub 2014 Jul 21.

PMID:
25044679
14.

The Xenopus alcohol dehydrogenase gene family: characterization and comparative analysis incorporating amphibian and reptilian genomes.

Borràs E, Albalat R, Duester G, Parés X, Farrés J.

BMC Genomics. 2014 Mar 20;15:216. doi: 10.1186/1471-2164-15-216.

15.

Supramolecular organization and heterochiral recognition in Langmuir monolayers of chiral azobenzene surfactants.

Pulido-Companys A, Albalat R, Garcia-Amorós J, Velasco D, Ignés-Mullol J.

Langmuir. 2013 Aug 6;29(31):9635-42. doi: 10.1021/la4006407. Epub 2013 Jul 24.

PMID:
23837787
16.

Impact of gene gains, losses and duplication modes on the origin and diversification of vertebrates.

Cañestro C, Albalat R, Irimia M, Garcia-Fernàndez J.

Semin Cell Dev Biol. 2013 Feb;24(2):83-94. doi: 10.1016/j.semcdb.2012.12.008. Epub 2013 Jan 3. Review.

PMID:
23291262
17.

Transposon diversity is higher in amphioxus than in vertebrates: functional and evolutionary inferences.

Cañestro C, Albalat R.

Brief Funct Genomics. 2012 Mar;11(2):131-41. doi: 10.1093/bfgp/els010. Epub 2012 Mar 2. Review.

PMID:
22389043
18.

DNA methylation in amphioxus: from ancestral functions to new roles in vertebrates.

Albalat R, Martí-Solans J, Cañestro C.

Brief Funct Genomics. 2012 Mar;11(2):142-55. doi: 10.1093/bfgp/els009. Epub 2012 Mar 2. Review.

PMID:
22389042
19.

Evolution of the genetic machinery of the visual cycle: a novelty of the vertebrate eye?

Albalat R.

Mol Biol Evol. 2012 May;29(5):1461-9. doi: 10.1093/molbev/msr313. Epub 2011 Dec 22.

PMID:
22319134
20.

Evolution of retinoid and steroid signaling: vertebrate diversification from an amphioxus perspective.

Albalat R, Brunet F, Laudet V, Schubert M.

Genome Biol Evol. 2011;3:985-1005. doi: 10.1093/gbe/evr084. Epub 2011 Aug 18.

21.

Autonomously moving catalytic microellipsoids dynamically guided by external magnetic fields.

Tierno P, Albalat R, Sagués F.

Small. 2010 Aug 16;6(16):1749-52. doi: 10.1002/smll.201000832. No abstract available.

PMID:
20665632
22.

Evolution of the nitric oxide synthase family in metazoans.

Andreakis N, D'Aniello S, Albalat R, Patti FP, Garcia-Fernàndez J, Procaccini G, Sordino P, Palumbo A.

Mol Biol Evol. 2011 Jan;28(1):163-79. doi: 10.1093/molbev/msq179. Epub 2010 Jul 16.

PMID:
20639231
23.

Oikopleura dioica alcohol dehydrogenase class 3 provides new insights into the evolution of retinoic acid synthesis in chordates.

Cañestro C, Albalat R, Postlethwait JH.

Zoolog Sci. 2010 Feb;27(2):128-33. doi: 10.2108/zsj.27.128.

PMID:
20141418
24.

Identification and characterisation of the developmental expression pattern of tbx5b, a novel tbx5 gene in zebrafish.

Albalat R, Baquero M, Minguillón C.

Gene Expr Patterns. 2010 Jan;10(1):24-30. doi: 10.1016/j.gep.2009.11.003. Epub 2009 Nov 17.

PMID:
19925885
25.

The retinoic acid machinery in invertebrates: ancestral elements and vertebrate innovations.

Albalat R.

Mol Cell Endocrinol. 2009 Dec 10;313(1-2):23-35. doi: 10.1016/j.mce.2009.08.029. Epub 2009 Sep 6. Review.

PMID:
19737598
26.

Identification of Aldh1a, Cyp26 and RAR orthologs in protostomes pushes back the retinoic acid genetic machinery in evolutionary time to the bilaterian ancestor.

Albalat R, Cañestro C.

Chem Biol Interact. 2009 Mar 16;178(1-3):188-96. doi: 10.1016/j.cbi.2008.09.017. Epub 2008 Sep 24.

PMID:
18926806
27.

Evolution of DNA-methylation machinery: DNA methyltransferases and methyl-DNA binding proteins in the amphioxus Branchiostoma floridae.

Albalat R.

Dev Genes Evol. 2008 Dec;218(11-12):691-701. doi: 10.1007/s00427-008-0247-7. Epub 2008 Sep 24.

PMID:
18813943
28.

The amphioxus genome illuminates vertebrate origins and cephalochordate biology.

Holland LZ, Albalat R, Azumi K, Benito-Gutiérrez E, Blow MJ, Bronner-Fraser M, Brunet F, Butts T, Candiani S, Dishaw LJ, Ferrier DE, Garcia-Fernàndez J, Gibson-Brown JJ, Gissi C, Godzik A, Hallböök F, Hirose D, Hosomichi K, Ikuta T, Inoko H, Kasahara M, Kasamatsu J, Kawashima T, Kimura A, Kobayashi M, Kozmik Z, Kubokawa K, Laudet V, Litman GW, McHardy AC, Meulemans D, Nonaka M, Olinski RP, Pancer Z, Pennacchio LA, Pestarino M, Rast JP, Rigoutsos I, Robinson-Rechavi M, Roch G, Saiga H, Sasakura Y, Satake M, Satou Y, Schubert M, Sherwood N, Shiina T, Takatori N, Tello J, Vopalensky P, Wada S, Xu A, Ye Y, Yoshida K, Yoshizaki F, Yu JK, Zhang Q, Zmasek CM, de Jong PJ, Osoegawa K, Putnam NH, Rokhsar DS, Satoh N, Holland PW.

Genome Res. 2008 Jul;18(7):1100-11. doi: 10.1101/gr.073676.107. Epub 2008 Jun 18. Erratum in: Genome Res. 2008 Aug;18(8):1380.

29.
30.

Insights into spawning behavior and development of the European amphioxus (Branchiostoma lanceolatum).

Fuentes M, Benito E, Bertrand S, Paris M, Mignardot A, Godoy L, Jimenez-Delgado S, Oliveri D, Candiani S, Hirsinger E, D'Aniello S, Pascual-Anaya J, Maeso I, Pestarino M, Vernier P, Nicolas JF, Schubert M, Laudet V, Geneviere AM, Albalat R, Garcia Fernandez J, Holland ND, Escriva H.

J Exp Zool B Mol Dev Evol. 2007 Jul 15;308(4):484-93.

PMID:
17520703
31.

Analysis of planarian Adh3 supports an intron-rich architecture and tissue-specific expression for the urbilaterian ancestral form.

Godoy L, Gonzàlez-Duarte R, Albalat R.

Comp Biochem Physiol B Biochem Mol Biol. 2007 Apr;146(4):489-95. Epub 2006 Nov 24.

PMID:
17270479
32.

Travelling waves in two-dimensional smectic-C domains.

Claret J, Crusats J, Albalat R, Ignés-Mullol J, Martínez-Seara H, Reigada R, Sagués F.

Eur Phys J E Soft Matter. 2006 Oct;21(2):111-6. Epub 2006 Nov 27.

PMID:
17180641
33.

Is retinoic acid genetic machinery a chordate innovation?

Cañestro C, Postlethwait JH, Gonzàlez-Duarte R, Albalat R.

Evol Dev. 2006 Sep-Oct;8(5):394-406.

PMID:
16925675
34.

S-Nitrosogluthathione reductase activity of amphioxus ADH3: insights into the nitric oxide metabolism.

Godoy L, Gonzàlez-Duarte R, Albalat R.

Int J Biol Sci. 2006;2(3):117-24. Epub 2006 May 5.

35.

Getting closer to a pre-vertebrate genome: the non-LTR retrotransposons of Branchiostoma floridae.

Permanyer J, Albalat R, Gonzàlez-Duarte R.

Int J Biol Sci. 2006;2(2):48-53. Epub 2006 Apr 10.

36.

Merging protein, gene and genomic data: the evolution of the MDR-ADH family.

Gonzàlez-Duarte R, Albalat R.

Heredity (Edinb). 2005 Sep;95(3):184-97. Review.

37.

Photoinduced molecular reorientation dynamics in confined domains of Langmuir monolayers.

Crusats J, Albalat R, Claret J, Ignés-Mullol J, Reigada R, Sagués F.

J Chem Phys. 2005 Jun 22;122(24):244722.

PMID:
16035808
38.

Photoswitchable orientational patterns of confined domains in monolayers.

Sagués F, Albalat R, Reigada R, Crusats J, Ignés-Mullol J, Claret J.

J Am Chem Soc. 2005 Apr 20;127(15):5296-7.

PMID:
15826148
39.

Texture changes inside smectic-C droplets in azobenzene Langmuir monolayers.

Ignés-Mullol J, Claret J, Albalat R, Crusats J, Reigada R, Romero MT, Sagués F.

Langmuir. 2005 Mar 29;21(7):2948-55.

PMID:
15779970
40.

Influence of temperature and composition on the mesoscopic textures of azobenzene Langmuir monolayers.

Crusats J, Albalat R, Claret J, Ignés-Mullol J, Sagués F.

Langmuir. 2004 Sep 28;20(20):8668-74.

PMID:
15379490
41.

Preliminary observations on the spawning conditions of the European amphioxus (Branchiostoma lanceolatum) in captivity.

Fuentes M, Schubert M, Dalfo D, Candiani S, Benito E, Gardenyes J, Godoy L, Moret F, Illas M, Patten I, Permanyer J, Oliveri D, Boeuf G, Falcon J, Pestarino M, Fernandez JG, Albalat R, Laudet V, Vernier P, Escriva H.

J Exp Zool B Mol Dev Evol. 2004 Jul 15;302(4):384-91.

PMID:
15287102
42.

The non-LTR retrotransposons in Ciona intestinalis: new insights into the evolution of chordate genomes.

Permanyer J, Gonzàlez-Duarte R, Albalat R.

Genome Biol. 2003;4(11):R73. Epub 2003 Oct 21.

43.

Isolation and characterization of the first non-autonomous transposable element in amphioxus, ATE-1.

Cañestro C, Albalat R, Gonzàlez-Duarte R.

Gene. 2003 Oct 30;318:69-73.

PMID:
14585499
44.

The first non-LTR retrotransposon characterised in the cephalochordate amphioxus, BfCR1, shows similarities to CR1-like elements.

Albalat R, Permanyer J, Cañestro C, Martínez-Mir A, Gonzàlez-Angulo O, Gonzàlez-Duarte R.

Cell Mol Life Sci. 2003 Apr;60(4):803-9.

PMID:
12785727
45.
46.

Retinoic acid synthesis in the prevertebrate amphioxus involves retinol oxidation.

Dalfó D, Albalat R, Molotkov A, Duester G, Gonzàlez-Duarte R.

Dev Genes Evol. 2002 Sep;212(8):388-93. Epub 2002 Jul 13.

PMID:
12203095
47.

Minisatellite instability at the Adh locus reveals somatic polymorphism in amphioxus.

Cañestro C, Gonzàlez-Duarte R, Albalat R.

Nucleic Acids Res. 2002 Jul 1;30(13):2871-6.

48.

Ascidian and amphioxus Adh genes correlate functional and molecular features of the ADH family expansion during vertebrate evolution.

Cañestro C, Albalat R, Hjelmqvist L, Godoy L, Jörnvall H, Gonzàlez-Duarte R.

J Mol Evol. 2002 Jan;54(1):81-9.

PMID:
11734901
49.

Characterization of the amphioxus presenilin gene in a high gene-density genomic region illustrates duplication during the vertebrate lineage.

Martínez-Mir A, Cañestro C, Gonzàlez-Duarte R, Albalat R.

Gene. 2001 Nov 28;279(2):157-64.

PMID:
11733140
50.

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