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Items: 14

1.

The European Nucleotide Archive in 2018.

Harrison PW, Alako B, Amid C, Cerdeño-Tárraga A, Cleland I, Holt S, Hussein A, Jayathilaka S, Kay S, Keane T, Leinonen R, Liu X, Martínez-Villacorta J, Milano A, Pakseresht N, Rajan J, Reddy K, Richards E, Rosello M, Silvester N, Smirnov D, Toribio AL, Vijayaraja S, Cochrane G.

Nucleic Acids Res. 2019 Jan 8;47(D1):D84-D88. doi: 10.1093/nar/gky1078.

2.

The European Nucleotide Archive in 2017.

Silvester N, Alako B, Amid C, Cerdeño-Tarrága A, Clarke L, Cleland I, Harrison PW, Jayathilaka S, Kay S, Keane T, Leinonen R, Liu X, Martínez-Villacorta J, Menchi M, Reddy K, Pakseresht N, Rajan J, Rossello M, Smirnov D, Toribio AL, Vaughan D, Zalunin V, Cochrane G.

Nucleic Acids Res. 2018 Jan 4;46(D1):D36-D40. doi: 10.1093/nar/gkx1125.

3.

EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.

Mitchell AL, Scheremetjew M, Denise H, Potter S, Tarkowska A, Qureshi M, Salazar GA, Pesseat S, Boland MA, Hunter FMI, Ten Hoopen P, Alako B, Amid C, Wilkinson DJ, Curtis TP, Cochrane G, Finn RD.

Nucleic Acids Res. 2018 Jan 4;46(D1):D726-D735. doi: 10.1093/nar/gkx967.

4.

European Nucleotide Archive in 2016.

Toribio AL, Alako B, Amid C, Cerdeño-Tarrága A, Clarke L, Cleland I, Fairley S, Gibson R, Goodgame N, Ten Hoopen P, Jayathilaka S, Kay S, Leinonen R, Liu X, Martínez-Villacorta J, Pakseresht N, Rajan J, Reddy K, Rosello M, Silvester N, Smirnov D, Vaughan D, Zalunin V, Cochrane G.

Nucleic Acids Res. 2017 Jan 4;45(D1):D32-D36. doi: 10.1093/nar/gkw1106. Epub 2016 Nov 29.

5.

Patterns of database citation in articles and patents indicate long-term scientific and industry value of biological data resources.

Bousfield D, McEntyre J, Velankar S, Papadatos G, Bateman A, Cochrane G, Kim JH, Graef F, Vartak V, Alako B, Blomberg N.

F1000Res. 2016 Feb 11;5. pii: ELIXIR-160. doi: 10.12688/f1000research.7911.1. eCollection 2016.

6.

Biocuration of functional annotation at the European nucleotide archive.

Gibson R, Alako B, Amid C, Cerdeño-Tárraga A, Cleland I, Goodgame N, Ten Hoopen P, Jayathilaka S, Kay S, Leinonen R, Liu X, Pallreddy S, Pakseresht N, Rajan J, Rosselló M, Silvester N, Smirnov D, Toribio AL, Vaughan D, Zalunin V, Cochrane G.

Nucleic Acids Res. 2016 Jan 4;44(D1):D58-66. doi: 10.1093/nar/gkv1311. Epub 2015 Nov 28.

7.

Content discovery and retrieval services at the European Nucleotide Archive.

Silvester N, Alako B, Amid C, Cerdeño-Tárraga A, Cleland I, Gibson R, Goodgame N, Ten Hoopen P, Kay S, Leinonen R, Li W, Liu X, Lopez R, Pakseresht N, Pallreddy S, Plaister S, Radhakrishnan R, Rossello M, Senf A, Smirnov D, Toribio AL, Vaughan D, Zalunin V, Cochrane G.

Nucleic Acids Res. 2015 Jan;43(Database issue):D23-9. doi: 10.1093/nar/gku1129. Epub 2014 Nov 17.

8.

Assembly information services in the European Nucleotide Archive.

Pakseresht N, Alako B, Amid C, Cerdeño-Tárraga A, Cleland I, Gibson R, Goodgame N, Gur T, Jang M, Kay S, Leinonen R, Li W, Liu X, Lopez R, McWilliam H, Oisel A, Pallreddy S, Plaister S, Radhakrishnan R, Rivière S, Rossello M, Senf A, Silvester N, Smirnov D, Squizzato S, ten Hoopen P, Toribio AL, Vaughan D, Zalunin V, Cochrane G.

Nucleic Acids Res. 2014 Jan;42(Database issue):D38-43. doi: 10.1093/nar/gkt1082. Epub 2013 Nov 8.

9.

Facing growth in the European Nucleotide Archive.

Cochrane G, Alako B, Amid C, Bower L, Cerdeño-Tárraga A, Cleland I, Gibson R, Goodgame N, Jang M, Kay S, Leinonen R, Lin X, Lopez R, McWilliam H, Oisel A, Pakseresht N, Pallreddy S, Park Y, Plaister S, Radhakrishnan R, Rivière S, Rossello M, Senf A, Silvester N, Smirnov D, Ten Hoopen P, Toribio A, Vaughan D, Zalunin V.

Nucleic Acids Res. 2013 Jan;41(Database issue):D30-5. doi: 10.1093/nar/gks1175. Epub 2012 Nov 29.

10.

A major role for the Plasmodium falciparum ApiAP2 protein PfSIP2 in chromosome end biology.

Flueck C, Bartfai R, Niederwieser I, Witmer K, Alako BT, Moes S, Bozdech Z, Jenoe P, Stunnenberg HG, Voss TS.

PLoS Pathog. 2010 Feb 26;6(2):e1000784. doi: 10.1371/journal.ppat.1000784.

11.

Plasmodium falciparum heterochromatin protein 1 marks genomic loci linked to phenotypic variation of exported virulence factors.

Flueck C, Bartfai R, Volz J, Niederwieser I, Salcedo-Amaya AM, Alako BT, Ehlgen F, Ralph SA, Cowman AF, Bozdech Z, Stunnenberg HG, Voss TS.

PLoS Pathog. 2009 Sep;5(9):e1000569. doi: 10.1371/journal.ppat.1000569. Epub 2009 Sep 4.

12.

Dynamic histone H3 epigenome marking during the intraerythrocytic cycle of Plasmodium falciparum.

Salcedo-Amaya AM, van Driel MA, Alako BT, Trelle MB, van den Elzen AM, Cohen AM, Janssen-Megens EM, van de Vegte-Bolmer M, Selzer RR, Iniguez AL, Green RD, Sauerwein RW, Jensen ON, Stunnenberg HG.

Proc Natl Acad Sci U S A. 2009 Jun 16;106(24):9655-60. doi: 10.1073/pnas.0902515106. Epub 2009 Jun 2.

13.

TreeDomViewer: a tool for the visualization of phylogeny and protein domain structure.

Alako BT, Rainey D, Nijveen H, Leunissen JA.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W104-9.

14.

CoPub Mapper: mining MEDLINE based on search term co-publication.

Alako BT, Veldhoven A, van Baal S, Jelier R, Verhoeven S, Rullmann T, Polman J, Jenster G.

BMC Bioinformatics. 2005 Mar 11;6:51.

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